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Filename
SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.filter_summary.txt
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0008_exp0011/B23LG7FLT4/nfcore_rnafusion__e7be3c7a--20260528-111100/starfusion/SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.filter_summary.txt
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1.2 KB
Workflow Run
dev_rna_exp0008_exp0011-e7be3c7a_b
Published
May 28, 2026 6:35 PM

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STAR-FUSION FILTERING SUMMARY
================================================================================

Input file: SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.tsv
Blacklist: blacklist_hg38_GRCh38_v2.4.0.tsv.gz
Filter config: starfusion_filter_config.yaml
Output file: SkinN_FFPE_L09_RNA_01_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.filter_summary.tsv

Total fusions: 1581
Pass (CALL=1): 1 (0.1%)
Fail (CALL=0): 1580 (99.9%)

Blacklist Flagging:
  Total blacklisted: 152
  All blacklisted fusions have CALL=0

Failure Reasons:
  Excluded SpliceType: INCL_NON_REF_SPLICE: 770
  Read count too low: 1 < 8: 567
  Blacklisted: 70
  Read count too low: 2 < 8: 48
  Blacklisted; aih_curated_blacklist score(3): 41
  aih_curated_blacklist score(3): 37
  Excluded annotation pattern: HGNC_GENEFAM: 30
  Excluded annotation pattern: GTEx_recurrent_StarF2019: 4
  aih_curated_blacklist score(5): 4
  Excluded annotation pattern: DGD_PARALOGS: 3
  Read count too low: 3 < 8: 3
  Read count too low: 7 < 8: 2
  Read count too low: 4 < 8: 1

Breakdown by SpliceType:
  INCL_NON_REF_SPLICE: 0 pass, 942 fail (total: 942)
  ONLY_REF_SPLICE: 1 pass, 638 fail (total: 639)