Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/cbc24ed5dac3b3c9186d6123e7bd4f/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/cbc24ed5dac3b3c9186d6123e7bd4f/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir/ref_genome.fa.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/b1323af45f295bddd05dd1a7292603/786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam
==> STAGING COMPLETE (5 inputs)
Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam --OUTPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_3.md.bam --METRICS_FILE 786-O_FFPE_RNA_0001_B23LG7FLT4_3.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
22:24:52.365 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Thu May 28 22:24:52 GMT 2026] MarkDuplicates --INPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_3.Aligned.sortedByCoord.out.bam --OUTPUT 786-O_FFPE_RNA_0001_B23LG7FLT4_3.md.bam --METRICS_FILE 786-O_FFPE_RNA_0001_B23LG7FLT4_3.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Thu May 28 22:24:52 GMT 2026] Executing as ?@nf-0ccbc24ed5dac3b3c9186d6123e7bd4f-2b84f-t4mzz on Linux 6.12.83 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-05-28 22:24:52 MarkDuplicates Start of doWork freeMemory: 105828552; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-05-28 22:24:52 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-05-28 22:24:52 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-05-28 22:24:59 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 4s. Last read position: chr1:1,049,333
INFO 2026-05-28 22:24:59 MarkDuplicates Tracking 3241 as yet unmatched pairs. 788 records in RAM.
INFO 2026-05-28 22:25:04 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 4s. Last read position: chr1:1,478,725
INFO 2026-05-28 22:25:04 MarkDuplicates Tracking 5213 as yet unmatched pairs. 217 records in RAM.
INFO 2026-05-28 22:25:08 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 4s. Last read position: chr1:2,515,649
INFO 2026-05-28 22:25:08 MarkDuplicates Tracking 7675 as yet unmatched pairs. 275 records in RAM.
INFO 2026-05-28 22:25:12 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:17s. Time for last 1,000,000: 4s. Last read position: chr1:7,785,565
INFO 2026-05-28 22:25:12 MarkDuplicates Tracking 10162 as yet unmatched pairs. 206 records in RAM.
INFO 2026-05-28 22:25:16 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 4s. Last read position: chr1:9,264,386
INFO 2026-05-28 22:25:16 MarkDuplicates Tracking 12316 as yet unmatched pairs. 286 records in RAM.
INFO 2026-05-28 22:25:21 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:26s. Time for last 1,000,000: 5s. Last read position: chr1:11,127,094
INFO 2026-05-28 22:25:21 MarkDuplicates Tracking 14715 as yet unmatched pairs. 392 records in RAM.
INFO 2026-05-28 22:25:25 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 3s. Last read position: chr1:13,779,640
INFO 2026-05-28 22:25:25 MarkDuplicates Tracking 16881 as yet unmatched pairs. 228 records in RAM.
INFO 2026-05-28 22:25:28 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 3s. Last read position: chr1:16,138,274
INFO 2026-05-28 22:25:28 MarkDuplicates Tracking 21201 as yet unmatched pairs. 2384 records in RAM.
INFO 2026-05-28 22:25:33 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 4s. Last read position: chr1:18,691,936
INFO 2026-05-28 22:25:33 MarkDuplicates Tracking 22157 as yet unmatched pairs. 1201 records in RAM.
INFO 2026-05-28 22:25:37 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 3s. Last read position: chr1:19,243,661
INFO 2026-05-28 22:25:37 MarkDuplicates Tracking 23675 as yet unmatched pairs. 631 records in RAM.
INFO 2026-05-28 22:25:41 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:46s. Time for last 1,000,000: 4s. Last read position: chr1:21,829,584
INFO 2026-05-28 22:25:41 MarkDuplicates Tracking 25309 as yet unmatched pairs. 166 records in RAM.
INFO 2026-05-28 22:25:44 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 3s. Last read position: chr1:23,816,716
INFO 2026-05-28 22:25:44 MarkDuplicates Tracking 27710 as yet unmatched pairs. 353 records in RAM.
INFO 2026-05-28 22:25:48 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:53s. Time for last 1,000,000: 3s. Last read position: chr1:26,554,632
INFO 2026-05-28 22:25:48 MarkDuplicates Tracking 29722 as yet unmatched pairs. 326 records in RAM.
INFO 2026-05-28 22:25:51 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:56s. Time for last 1,000,000: 3s. Last read position: chr1:27,914,133
INFO 2026-05-28 22:25:51 MarkDuplicates Tracking 31969 as yet unmatched pairs. 271 records in RAM.
INFO 2026-05-28 22:25:55 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 3s. Last read position: chr1:31,364,103
INFO 2026-05-28 22:25:55 MarkDuplicates Tracking 33949 as yet unmatched pairs. 41 records in RAM.
INFO 2026-05-28 22:25:58 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:01:03s. Time for last 1,000,000: 3s. Last read position: chr1:32,672,685
INFO 2026-05-28 22:25:58 MarkDuplicates Tracking 37524 as yet unmatched pairs. 1395 records in RAM.
INFO 2026-05-28 22:26:01 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:01:06s. Time for last 1,000,000: 3s. Last read position: chr1:35,389,951
INFO 2026-05-28 22:26:01 MarkDuplicates Tracking 38606 as yet unmatched pairs. 187 records in RAM.
INFO 2026-05-28 22:26:05 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 3s. Last read position: chr1:36,462,101
INFO 2026-05-28 22:26:05 MarkDuplicates Tracking 41321 as yet unmatched pairs. 630 records in RAM.
INFO 2026-05-28 22:26:08 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 3s. Last read position: chr1:39,361,467
INFO 2026-05-28 22:26:08 MarkDuplicates Tracking 44086 as yet unmatched pairs. 1301 records in RAM.
INFO 2026-05-28 22:26:11 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:01:16s. Time for last 1,000,000: 2s. Last read position: chr1:39,966,868
INFO 2026-05-28 22:26:11 MarkDuplicates Tracking 45287 as yet unmatched pairs. 506 records in RAM.
INFO 2026-05-28 22:26:15 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:01:20s. Time for last 1,000,000: 3s. Last read position: chr1:42,278,774
INFO 2026-05-28 22:26:15 MarkDuplicates Tracking 47062 as yet unmatched pairs. 235 records in RAM.
INFO 2026-05-28 22:26:19 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 4s. Last read position: chr1:43,448,415
INFO 2026-05-28 22:26:19 MarkDuplicates Tracking 49662 as yet unmatched pairs. 565 records in RAM.
INFO 2026-05-28 22:26:23 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 3s. Last read position: chr1:44,778,107
INFO 2026-05-28 22:26:23 MarkDuplicates Tracking 51859 as yet unmatched pairs. 495 records in RAM.
INFO 2026-05-28 22:26:25 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 2s. Last read position: chr1:46,260,894
INFO 2026-05-28 22:26:25 MarkDuplicates Tracking 53628 as yet unmatched pairs. 158 records in RAM.
INFO 2026-05-28 22:26:28 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 2s. Last read position: chr1:52,416,690
INFO 2026-05-28 22:26:28 MarkDuplicates Tracking 55756 as yet unmatched pairs. 104 records in RAM.
INFO 2026-05-28 22:26:30 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 2s. Last read position: chr1:55,178,116
INFO 2026-05-28 22:26:30 MarkDuplicates Tracking 57820 as yet unmatched pairs. 50 records in RAM.
INFO 2026-05-28 22:26:32 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:01:37s. Time for last 1,000,000: 2s. Last read position: chr1:67,686,037
INFO 2026-05-28 22:26:32 MarkDuplicates Tracking 60168 as yet unmatched pairs. 363 records in RAM.
INFO 2026-05-28 22:26:34 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:01:39s. Time for last 1,000,000: 1s. Last read position: chr1:85,580,921
INFO 2026-05-28 22:26:34 MarkDuplicates Tracking 64036 as yet unmatched pairs. 2267 records in RAM.
INFO 2026-05-28 22:26:36 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr1:92,844,089
INFO 2026-05-28 22:26:36 MarkDuplicates Tracking 63989 as yet unmatched pairs. 199 records in RAM.
INFO 2026-05-28 22:26:39 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:01:44s. Time for last 1,000,000: 2s. Last read position: chr1:97,595,108
INFO 2026-05-28 22:26:39 MarkDuplicates Tracking 66263 as yet unmatched pairs. 496 records in RAM.
INFO 2026-05-28 22:26:41 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:01:46s. Time for last 1,000,000: 2s. Last read position: chr1:103,014,548
INFO 2026-05-28 22:26:41 MarkDuplicates Tracking 71511 as yet unmatched pairs. 3716 records in RAM.
INFO 2026-05-28 22:26:43 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:01:48s. Time for last 1,000,000: 2s. Last read position: chr1:109,324,957
INFO 2026-05-28 22:26:43 MarkDuplicates Tracking 71445 as yet unmatched pairs. 1406 records in RAM.
INFO 2026-05-28 22:26:46 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr1:112,416,154
INFO 2026-05-28 22:26:46 MarkDuplicates Tracking 72345 as yet unmatched pairs. 144 records in RAM.
INFO 2026-05-28 22:26:49 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 3s. Last read position: chr1:114,424,638
INFO 2026-05-28 22:26:49 MarkDuplicates Tracking 75279 as yet unmatched pairs. 1158 records in RAM.
INFO 2026-05-28 22:26:52 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:57s. Time for last 1,000,000: 2s. Last read position: chr1:116,389,598
INFO 2026-05-28 22:26:52 MarkDuplicates Tracking 80467 as yet unmatched pairs. 4354 records in RAM.
INFO 2026-05-28 22:26:54 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 2s. Last read position: chr1:116,967,056
INFO 2026-05-28 22:26:54 MarkDuplicates Tracking 78838 as yet unmatched pairs. 663 records in RAM.
INFO 2026-05-28 22:26:56 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr1:119,743,896
INFO 2026-05-28 22:26:56 MarkDuplicates Tracking 87197 as yet unmatched pairs. 6899 records in RAM.
INFO 2026-05-28 22:26:58 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:02:03s. Time for last 1,000,000: 1s. Last read position: chr1:119,918,410
INFO 2026-05-28 22:26:58 MarkDuplicates Tracking 91331 as yet unmatched pairs. 8904 records in RAM.
INFO 2026-05-28 22:27:01 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:02:06s. Time for last 1,000,000: 2s. Last read position: chr1:119,926,525
INFO 2026-05-28 22:27:01 MarkDuplicates Tracking 95119 as yet unmatched pairs. 10428 records in RAM.
INFO 2026-05-28 22:27:04 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 3s. Last read position: chr1:119,955,115
INFO 2026-05-28 22:27:04 MarkDuplicates Tracking 93747 as yet unmatched pairs. 6953 records in RAM.
INFO 2026-05-28 22:27:07 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 2s. Last read position: chr1:120,005,459
INFO 2026-05-28 22:27:07 MarkDuplicates Tracking 96126 as yet unmatched pairs. 7139 records in RAM.
INFO 2026-05-28 22:27:08 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:02:13s. Time for last 1,000,000: 1s. Last read position: chr1:120,543,965
INFO 2026-05-28 22:27:08 MarkDuplicates Tracking 90680 as yet unmatched pairs. 225 records in RAM.
INFO 2026-05-28 22:27:10 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr1:144,897,121
INFO 2026-05-28 22:27:10 MarkDuplicates Tracking 92149 as yet unmatched pairs. 617 records in RAM.
INFO 2026-05-28 22:27:12 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr1:146,189,255
INFO 2026-05-28 22:27:12 MarkDuplicates Tracking 93648 as yet unmatched pairs. 959 records in RAM.
INFO 2026-05-28 22:27:13 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr1:148,607,660
INFO 2026-05-28 22:27:13 MarkDuplicates Tracking 93684 as yet unmatched pairs. 92 records in RAM.
INFO 2026-05-28 22:27:15 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr1:149,480,823
INFO 2026-05-28 22:27:15 MarkDuplicates Tracking 94761 as yet unmatched pairs. 178 records in RAM.
INFO 2026-05-28 22:27:17 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:02:22s. Time for last 1,000,000: 1s. Last read position: chr1:149,887,011
INFO 2026-05-28 22:27:17 MarkDuplicates Tracking 97251 as yet unmatched pairs. 1443 records in RAM.
INFO 2026-05-28 22:27:20 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:02:25s. Time for last 1,000,000: 3s. Last read position: chr1:150,967,861
INFO 2026-05-28 22:27:20 MarkDuplicates Tracking 98851 as yet unmatched pairs. 928 records in RAM.
INFO 2026-05-28 22:27:23 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:02:28s. Time for last 1,000,000: 3s. Last read position: chr1:152,217,981
INFO 2026-05-28 22:27:23 MarkDuplicates Tracking 99900 as yet unmatched pairs. 112 records in RAM.
INFO 2026-05-28 22:27:25 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr1:153,962,695
INFO 2026-05-28 22:27:25 MarkDuplicates Tracking 101903 as yet unmatched pairs. 87 records in RAM.
INFO 2026-05-28 22:27:27 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr1:154,586,231
INFO 2026-05-28 22:27:27 MarkDuplicates Tracking 104564 as yet unmatched pairs. 868 records in RAM.
INFO 2026-05-28 22:27:29 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 2s. Last read position: chr1:155,057,953
INFO 2026-05-28 22:27:29 MarkDuplicates Tracking 107521 as yet unmatched pairs. 1641 records in RAM.
INFO 2026-05-28 22:27:31 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr1:155,433,407
INFO 2026-05-28 22:27:31 MarkDuplicates Tracking 108294 as yet unmatched pairs. 249 records in RAM.
INFO 2026-05-28 22:27:33 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 2s. Last read position: chr1:155,921,411
INFO 2026-05-28 22:27:33 MarkDuplicates Tracking 110367 as yet unmatched pairs. 545 records in RAM.
INFO 2026-05-28 22:27:36 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 2s. Last read position: chr1:156,136,317
INFO 2026-05-28 22:27:36 MarkDuplicates Tracking 115275 as yet unmatched pairs. 2871 records in RAM.
INFO 2026-05-28 22:27:39 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 2s. Last read position: chr1:156,669,519
INFO 2026-05-28 22:27:39 MarkDuplicates Tracking 115822 as yet unmatched pairs. 1184 records in RAM.
INFO 2026-05-28 22:27:41 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:02:46s. Time for last 1,000,000: 2s. Last read position: chr1:158,088,423
INFO 2026-05-28 22:27:41 MarkDuplicates Tracking 117472 as yet unmatched pairs. 584 records in RAM.
INFO 2026-05-28 22:27:43 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:02:48s. Time for last 1,000,000: 2s. Last read position: chr1:161,229,807
INFO 2026-05-28 22:27:43 MarkDuplicates Tracking 119123 as yet unmatched pairs. 200 records in RAM.
INFO 2026-05-28 22:27:46 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:02:51s. Time for last 1,000,000: 2s. Last read position: chr1:169,111,422
INFO 2026-05-28 22:27:46 MarkDuplicates Tracking 123532 as yet unmatched pairs. 2486 records in RAM.
INFO 2026-05-28 22:27:48 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr1:173,780,215
INFO 2026-05-28 22:27:48 MarkDuplicates Tracking 122991 as yet unmatched pairs. 48 records in RAM.
INFO 2026-05-28 22:27:50 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 2s. Last read position: chr1:181,002,689
INFO 2026-05-28 22:27:50 MarkDuplicates Tracking 125165 as yet unmatched pairs. 203 records in RAM.
INFO 2026-05-28 22:27:52 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr1:186,314,669
INFO 2026-05-28 22:27:52 MarkDuplicates Tracking 128008 as yet unmatched pairs. 938 records in RAM.
INFO 2026-05-28 22:27:54 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:02:59s. Time for last 1,000,000: 2s. Last read position: chr1:197,122,205
INFO 2026-05-28 22:27:54 MarkDuplicates Tracking 129518 as yet unmatched pairs. 602 records in RAM.
INFO 2026-05-28 22:27:56 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:03:01s. Time for last 1,000,000: 2s. Last read position: chr1:202,731,021
INFO 2026-05-28 22:27:56 MarkDuplicates Tracking 131227 as yet unmatched pairs. 154 records in RAM.
INFO 2026-05-28 22:27:59 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr1:205,269,692
INFO 2026-05-28 22:27:59 MarkDuplicates Tracking 133380 as yet unmatched pairs. 231 records in RAM.
INFO 2026-05-28 22:28:02 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:03:07s. Time for last 1,000,000: 2s. Last read position: chr1:211,312,857
INFO 2026-05-28 22:28:02 MarkDuplicates Tracking 135625 as yet unmatched pairs. 555 records in RAM.
INFO 2026-05-28 22:28:03 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr1:214,657,244
INFO 2026-05-28 22:28:03 MarkDuplicates Tracking 137544 as yet unmatched pairs. 648 records in RAM.
INFO 2026-05-28 22:28:05 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:03:10s. Time for last 1,000,000: 2s. Last read position: chr1:224,183,257
INFO 2026-05-28 22:28:05 MarkDuplicates Tracking 138881 as yet unmatched pairs. 118 records in RAM.
INFO 2026-05-28 22:28:07 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 1s. Last read position: chr1:225,887,851
INFO 2026-05-28 22:28:07 MarkDuplicates Tracking 140709 as yet unmatched pairs. 22 records in RAM.
INFO 2026-05-28 22:28:09 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:03:14s. Time for last 1,000,000: 1s. Last read position: chr1:228,308,310
INFO 2026-05-28 22:28:09 MarkDuplicates Tracking 142891 as yet unmatched pairs. 10 records in RAM.
INFO 2026-05-28 22:28:11 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:03:16s. Time for last 1,000,000: 1s. Last read position: chr1:234,607,331
INFO 2026-05-28 22:28:11 MarkDuplicates Tracking 146022 as yet unmatched pairs. 769 records in RAM.
INFO 2026-05-28 22:28:13 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:03:18s. Time for last 1,000,000: 2s. Last read position: chr1:243,191,070
INFO 2026-05-28 22:28:13 MarkDuplicates Tracking 147615 as yet unmatched pairs. 118 records in RAM.
INFO 2026-05-28 22:28:16 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 2s. Last read position: chr1:246,876,050
INFO 2026-05-28 22:28:16 MarkDuplicates Tracking 149860 as yet unmatched pairs. 266 records in RAM.
INFO 2026-05-28 22:28:19 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 3s. Last read position: chr2:9,490,372
INFO 2026-05-28 22:28:19 MarkDuplicates Tracking 152091 as yet unmatched pairs. 150508 records in RAM.
INFO 2026-05-28 22:28:22 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:03:27s. Time for last 1,000,000: 2s. Last read position: chr2:15,330,687
INFO 2026-05-28 22:28:22 MarkDuplicates Tracking 153932 as yet unmatched pairs. 152324 records in RAM.
INFO 2026-05-28 22:28:24 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:03:29s. Time for last 1,000,000: 2s. Last read position: chr2:24,691,611
INFO 2026-05-28 22:28:24 MarkDuplicates Tracking 156241 as yet unmatched pairs. 154606 records in RAM.
INFO 2026-05-28 22:28:26 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 2s. Last read position: chr2:27,037,629
INFO 2026-05-28 22:28:26 MarkDuplicates Tracking 158435 as yet unmatched pairs. 156778 records in RAM.
INFO 2026-05-28 22:28:29 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr2:27,801,472
INFO 2026-05-28 22:28:29 MarkDuplicates Tracking 160033 as yet unmatched pairs. 158359 records in RAM.
INFO 2026-05-28 22:28:31 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr2:28,779,016
INFO 2026-05-28 22:28:31 MarkDuplicates Tracking 174692 as yet unmatched pairs. 172989 records in RAM.
INFO 2026-05-28 22:28:33 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:03:38s. Time for last 1,000,000: 2s. Last read position: chr2:32,206,858
INFO 2026-05-28 22:28:33 MarkDuplicates Tracking 164368 as yet unmatched pairs. 162644 records in RAM.
INFO 2026-05-28 22:28:35 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,261
INFO 2026-05-28 22:28:35 MarkDuplicates Tracking 227204 as yet unmatched pairs. 157100 records in RAM.
INFO 2026-05-28 22:28:38 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:03:43s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,264
INFO 2026-05-28 22:28:38 MarkDuplicates Tracking 790982 as yet unmatched pairs. 104913 records in RAM.
INFO 2026-05-28 22:28:40 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr2:32,916,406
INFO 2026-05-28 22:28:40 MarkDuplicates Tracking 1082485 as yet unmatched pairs. 77754 records in RAM.
INFO 2026-05-28 22:28:41 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,411
INFO 2026-05-28 22:28:41 MarkDuplicates Tracking 1109169 as yet unmatched pairs. 75531 records in RAM.
INFO 2026-05-28 22:28:43 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 2s. Last read position: chr2:37,138,329
INFO 2026-05-28 22:28:43 MarkDuplicates Tracking 1157309 as yet unmatched pairs. 69883 records in RAM.
INFO 2026-05-28 22:28:45 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr2:43,560,233
INFO 2026-05-28 22:28:45 MarkDuplicates Tracking 1155524 as yet unmatched pairs. 68087 records in RAM.
INFO 2026-05-28 22:28:47 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 2s. Last read position: chr2:48,376,230
INFO 2026-05-28 22:28:47 MarkDuplicates Tracking 1152860 as yet unmatched pairs. 65390 records in RAM.
INFO 2026-05-28 22:28:49 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 2s. Last read position: chr2:55,222,596
INFO 2026-05-28 22:28:49 MarkDuplicates Tracking 1150631 as yet unmatched pairs. 63130 records in RAM.
INFO 2026-05-28 22:28:52 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 2s. Last read position: chr2:61,331,273
INFO 2026-05-28 22:28:52 MarkDuplicates Tracking 1149142 as yet unmatched pairs. 61633 records in RAM.
INFO 2026-05-28 22:28:54 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 2s. Last read position: chr2:68,138,766
INFO 2026-05-28 22:28:54 MarkDuplicates Tracking 1146952 as yet unmatched pairs. 59420 records in RAM.
INFO 2026-05-28 22:28:56 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 2s. Last read position: chr2:71,070,532
INFO 2026-05-28 22:28:56 MarkDuplicates Tracking 1144871 as yet unmatched pairs. 57321 records in RAM.
INFO 2026-05-28 22:28:59 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:04:03s. Time for last 1,000,000: 2s. Last read position: chr2:74,252,270
INFO 2026-05-28 22:28:59 MarkDuplicates Tracking 1142566 as yet unmatched pairs. 54998 records in RAM.
INFO 2026-05-28 22:29:01 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:04:06s. Time for last 1,000,000: 2s. Last read position: chr2:85,304,328
INFO 2026-05-28 22:29:01 MarkDuplicates Tracking 1140447 as yet unmatched pairs. 52852 records in RAM.
INFO 2026-05-28 22:29:03 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:04:08s. Time for last 1,000,000: 2s. Last read position: chr2:87,792,195
INFO 2026-05-28 22:29:03 MarkDuplicates Tracking 1138536 as yet unmatched pairs. 50924 records in RAM.
INFO 2026-05-28 22:29:05 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 2s. Last read position: chr2:96,761,584
INFO 2026-05-28 22:29:05 MarkDuplicates Tracking 1136742 as yet unmatched pairs. 49090 records in RAM.
INFO 2026-05-28 22:29:07 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 2s. Last read position: chr2:101,253,368
INFO 2026-05-28 22:29:07 MarkDuplicates Tracking 1134638 as yet unmatched pairs. 46969 records in RAM.
INFO 2026-05-28 22:29:09 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 2s. Last read position: chr2:108,672,908
INFO 2026-05-28 22:29:09 MarkDuplicates Tracking 1133312 as yet unmatched pairs. 45622 records in RAM.
INFO 2026-05-28 22:29:11 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:04:16s. Time for last 1,000,000: 2s. Last read position: chr2:109,804,106
INFO 2026-05-28 22:29:11 MarkDuplicates Tracking 1131446 as yet unmatched pairs. 43746 records in RAM.
INFO 2026-05-28 22:29:13 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 2s. Last read position: chr2:112,324,274
INFO 2026-05-28 22:29:13 MarkDuplicates Tracking 1130394 as yet unmatched pairs. 42676 records in RAM.
INFO 2026-05-28 22:29:15 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr2:118,846,633
INFO 2026-05-28 22:29:15 MarkDuplicates Tracking 1129022 as yet unmatched pairs. 41292 records in RAM.
INFO 2026-05-28 22:29:17 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:04:22s. Time for last 1,000,000: 2s. Last read position: chr2:130,182,627
INFO 2026-05-28 22:29:17 MarkDuplicates Tracking 1128871 as yet unmatched pairs. 41115 records in RAM.
INFO 2026-05-28 22:29:19 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr2:135,748,267
INFO 2026-05-28 22:29:19 MarkDuplicates Tracking 1125028 as yet unmatched pairs. 37233 records in RAM.
INFO 2026-05-28 22:29:21 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 2s. Last read position: chr2:151,465,646
INFO 2026-05-28 22:29:21 MarkDuplicates Tracking 1122891 as yet unmatched pairs. 35062 records in RAM.
INFO 2026-05-28 22:29:23 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 2s. Last read position: chr2:159,762,945
INFO 2026-05-28 22:29:23 MarkDuplicates Tracking 1121258 as yet unmatched pairs. 33398 records in RAM.
INFO 2026-05-28 22:29:26 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 2s. Last read position: chr2:171,747,774
INFO 2026-05-28 22:29:26 MarkDuplicates Tracking 1118955 as yet unmatched pairs. 31078 records in RAM.
INFO 2026-05-28 22:29:29 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:04:34s. Time for last 1,000,000: 3s. Last read position: chr2:177,215,562
INFO 2026-05-28 22:29:29 MarkDuplicates Tracking 1117770 as yet unmatched pairs. 29869 records in RAM.
INFO 2026-05-28 22:29:32 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:04:37s. Time for last 1,000,000: 2s. Last read position: chr2:182,989,139
INFO 2026-05-28 22:29:32 MarkDuplicates Tracking 1115545 as yet unmatched pairs. 27631 records in RAM.
INFO 2026-05-28 22:29:34 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:04:39s. Time for last 1,000,000: 2s. Last read position: chr2:190,687,293
INFO 2026-05-28 22:29:34 MarkDuplicates Tracking 1113152 as yet unmatched pairs. 25223 records in RAM.
INFO 2026-05-28 22:29:37 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 2s. Last read position: chr2:200,412,318
INFO 2026-05-28 22:29:37 MarkDuplicates Tracking 1111308 as yet unmatched pairs. 23347 records in RAM.
INFO 2026-05-28 22:29:40 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 2s. Last read position: chr2:203,440,960
INFO 2026-05-28 22:29:40 MarkDuplicates Tracking 1109164 as yet unmatched pairs. 21188 records in RAM.
INFO 2026-05-28 22:29:43 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:04:48s. Time for last 1,000,000: 2s. Last read position: chr2:207,124,179
INFO 2026-05-28 22:29:43 MarkDuplicates Tracking 1107868 as yet unmatched pairs. 19874 records in RAM.
INFO 2026-05-28 22:29:45 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 2s. Last read position: chr2:215,422,228
INFO 2026-05-28 22:29:45 MarkDuplicates Tracking 1105296 as yet unmatched pairs. 17286 records in RAM.
INFO 2026-05-28 22:29:48 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 2s. Last read position: chr2:218,592,623
INFO 2026-05-28 22:29:48 MarkDuplicates Tracking 1103105 as yet unmatched pairs. 15079 records in RAM.
INFO 2026-05-28 22:29:50 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 2s. Last read position: chr2:219,461,845
INFO 2026-05-28 22:29:50 MarkDuplicates Tracking 1100628 as yet unmatched pairs. 12583 records in RAM.
INFO 2026-05-28 22:29:52 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 2s. Last read position: chr2:224,830,555
INFO 2026-05-28 22:29:52 MarkDuplicates Tracking 1097890 as yet unmatched pairs. 9797 records in RAM.
INFO 2026-05-28 22:29:55 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 2s. Last read position: chr2:231,455,170
INFO 2026-05-28 22:29:55 MarkDuplicates Tracking 1095994 as yet unmatched pairs. 7883 records in RAM.
INFO 2026-05-28 22:29:57 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:05:02s. Time for last 1,000,000: 2s. Last read position: chr2:235,042,020
INFO 2026-05-28 22:29:57 MarkDuplicates Tracking 1093968 as yet unmatched pairs. 5839 records in RAM.
INFO 2026-05-28 22:30:00 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:05:05s. Time for last 1,000,000: 2s. Last read position: chr2:240,462,507
INFO 2026-05-28 22:30:00 MarkDuplicates Tracking 1093632 as yet unmatched pairs. 5471 records in RAM.
INFO 2026-05-28 22:30:02 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr2:241,497,629
INFO 2026-05-28 22:30:02 MarkDuplicates Tracking 1089220 as yet unmatched pairs. 1033 records in RAM.
INFO 2026-05-28 22:30:04 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 2s. Last read position: chr3:9,840,710
INFO 2026-05-28 22:30:04 MarkDuplicates Tracking 1086984 as yet unmatched pairs. 66741 records in RAM.
INFO 2026-05-28 22:30:07 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 2s. Last read position: chr3:13,358,271
INFO 2026-05-28 22:30:07 MarkDuplicates Tracking 1085207 as yet unmatched pairs. 64948 records in RAM.
INFO 2026-05-28 22:30:09 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 2s. Last read position: chr3:23,878,537
INFO 2026-05-28 22:30:09 MarkDuplicates Tracking 1083163 as yet unmatched pairs. 62866 records in RAM.
INFO 2026-05-28 22:30:12 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 2s. Last read position: chr3:33,068,282
INFO 2026-05-28 22:30:12 MarkDuplicates Tracking 1081277 as yet unmatched pairs. 60955 records in RAM.
INFO 2026-05-28 22:30:14 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 2s. Last read position: chr3:39,143,118
INFO 2026-05-28 22:30:14 MarkDuplicates Tracking 1078870 as yet unmatched pairs. 58526 records in RAM.
INFO 2026-05-28 22:30:16 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr3:42,637,955
INFO 2026-05-28 22:30:16 MarkDuplicates Tracking 1076944 as yet unmatched pairs. 56588 records in RAM.
INFO 2026-05-28 22:30:18 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 2s. Last read position: chr3:47,336,587
INFO 2026-05-28 22:30:18 MarkDuplicates Tracking 1074718 as yet unmatched pairs. 54339 records in RAM.
INFO 2026-05-28 22:30:21 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:05:26s. Time for last 1,000,000: 2s. Last read position: chr3:47,921,795
INFO 2026-05-28 22:30:21 MarkDuplicates Tracking 1074429 as yet unmatched pairs. 54034 records in RAM.
INFO 2026-05-28 22:30:23 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:05:28s. Time for last 1,000,000: 2s. Last read position: chr3:48,980,390
INFO 2026-05-28 22:30:23 MarkDuplicates Tracking 1070655 as yet unmatched pairs. 50242 records in RAM.
INFO 2026-05-28 22:30:25 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:05:30s. Time for last 1,000,000: 2s. Last read position: chr3:49,124,803
INFO 2026-05-28 22:30:25 MarkDuplicates Tracking 1068593 as yet unmatched pairs. 48153 records in RAM.
INFO 2026-05-28 22:30:27 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:05:32s. Time for last 1,000,000: 1s. Last read position: chr3:49,674,545
INFO 2026-05-28 22:30:27 MarkDuplicates Tracking 1066510 as yet unmatched pairs. 46055 records in RAM.
INFO 2026-05-28 22:30:29 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:05:34s. Time for last 1,000,000: 2s. Last read position: chr3:50,256,939
INFO 2026-05-28 22:30:29 MarkDuplicates Tracking 1065982 as yet unmatched pairs. 45501 records in RAM.
INFO 2026-05-28 22:30:32 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:05:37s. Time for last 1,000,000: 2s. Last read position: chr3:51,994,053
INFO 2026-05-28 22:30:32 MarkDuplicates Tracking 1062743 as yet unmatched pairs. 42240 records in RAM.
INFO 2026-05-28 22:30:34 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:05:39s. Time for last 1,000,000: 2s. Last read position: chr3:52,693,804
INFO 2026-05-28 22:30:34 MarkDuplicates Tracking 1059547 as yet unmatched pairs. 39027 records in RAM.
INFO 2026-05-28 22:30:36 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:05:41s. Time for last 1,000,000: 2s. Last read position: chr3:53,255,843
INFO 2026-05-28 22:30:36 MarkDuplicates Tracking 1060404 as yet unmatched pairs. 39857 records in RAM.
INFO 2026-05-28 22:30:38 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:05:43s. Time for last 1,000,000: 2s. Last read position: chr3:58,153,492
INFO 2026-05-28 22:30:38 MarkDuplicates Tracking 1055778 as yet unmatched pairs. 35212 records in RAM.
INFO 2026-05-28 22:30:41 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 2s. Last read position: chr3:72,888,381
INFO 2026-05-28 22:30:41 MarkDuplicates Tracking 1053260 as yet unmatched pairs. 32671 records in RAM.
INFO 2026-05-28 22:30:43 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 1s. Last read position: chr3:98,799,571
INFO 2026-05-28 22:30:43 MarkDuplicates Tracking 1051911 as yet unmatched pairs. 31296 records in RAM.
INFO 2026-05-28 22:30:45 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 2s. Last read position: chr3:100,926,439
INFO 2026-05-28 22:30:45 MarkDuplicates Tracking 1049299 as yet unmatched pairs. 28670 records in RAM.
INFO 2026-05-28 22:30:47 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:05:52s. Time for last 1,000,000: 1s. Last read position: chr3:114,350,861
INFO 2026-05-28 22:30:47 MarkDuplicates Tracking 1047656 as yet unmatched pairs. 26990 records in RAM.
INFO 2026-05-28 22:30:49 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:05:54s. Time for last 1,000,000: 1s. Last read position: chr3:123,638,142
INFO 2026-05-28 22:30:49 MarkDuplicates Tracking 1045764 as yet unmatched pairs. 25052 records in RAM.
INFO 2026-05-28 22:30:51 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:05:56s. Time for last 1,000,000: 2s. Last read position: chr3:127,017,759
INFO 2026-05-28 22:30:51 MarkDuplicates Tracking 1043616 as yet unmatched pairs. 22873 records in RAM.
INFO 2026-05-28 22:30:54 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 2s. Last read position: chr3:129,436,686
INFO 2026-05-28 22:30:54 MarkDuplicates Tracking 1041199 as yet unmatched pairs. 20441 records in RAM.
INFO 2026-05-28 22:30:56 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 2s. Last read position: chr3:134,371,028
INFO 2026-05-28 22:30:56 MarkDuplicates Tracking 1039512 as yet unmatched pairs. 18732 records in RAM.
INFO 2026-05-28 22:30:59 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 2s. Last read position: chr3:146,206,727
INFO 2026-05-28 22:30:59 MarkDuplicates Tracking 1036590 as yet unmatched pairs. 15783 records in RAM.
INFO 2026-05-28 22:31:01 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:06:06s. Time for last 1,000,000: 2s. Last read position: chr3:154,315,156
INFO 2026-05-28 22:31:01 MarkDuplicates Tracking 1034589 as yet unmatched pairs. 13762 records in RAM.
INFO 2026-05-28 22:31:03 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr3:171,687,384
INFO 2026-05-28 22:31:03 MarkDuplicates Tracking 1032624 as yet unmatched pairs. 11786 records in RAM.
INFO 2026-05-28 22:31:05 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr3:181,713,309
INFO 2026-05-28 22:31:05 MarkDuplicates Tracking 1030648 as yet unmatched pairs. 9785 records in RAM.
INFO 2026-05-28 22:31:08 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:06:13s. Time for last 1,000,000: 2s. Last read position: chr3:184,307,477
INFO 2026-05-28 22:31:08 MarkDuplicates Tracking 1028819 as yet unmatched pairs. 7936 records in RAM.
INFO 2026-05-28 22:31:10 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:06:15s. Time for last 1,000,000: 2s. Last read position: chr3:186,048,704
INFO 2026-05-28 22:31:10 MarkDuplicates Tracking 1027992 as yet unmatched pairs. 7074 records in RAM.
INFO 2026-05-28 22:31:12 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:06:17s. Time for last 1,000,000: 2s. Last read position: chr3:193,643,038
INFO 2026-05-28 22:31:12 MarkDuplicates Tracking 1024685 as yet unmatched pairs. 3743 records in RAM.
INFO 2026-05-28 22:31:14 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:06:19s. Time for last 1,000,000: 1s. Last read position: chr3:196,569,244
INFO 2026-05-28 22:31:14 MarkDuplicates Tracking 1022437 as yet unmatched pairs. 1463 records in RAM.
INFO 2026-05-28 22:31:17 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 2s. Last read position: chr4:962,871
INFO 2026-05-28 22:31:17 MarkDuplicates Tracking 1020330 as yet unmatched pairs. 47090 records in RAM.
INFO 2026-05-28 22:31:19 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 2s. Last read position: chr4:1,728,661
INFO 2026-05-28 22:31:19 MarkDuplicates Tracking 1020590 as yet unmatched pairs. 47328 records in RAM.
INFO 2026-05-28 22:31:21 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 2s. Last read position: chr4:2,072,979
INFO 2026-05-28 22:31:21 MarkDuplicates Tracking 1015375 as yet unmatched pairs. 42104 records in RAM.
INFO 2026-05-28 22:31:24 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 2s. Last read position: chr4:5,798,621
INFO 2026-05-28 22:31:24 MarkDuplicates Tracking 1013308 as yet unmatched pairs. 40006 records in RAM.
INFO 2026-05-28 22:31:26 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 2s. Last read position: chr4:9,937,722
INFO 2026-05-28 22:31:26 MarkDuplicates Tracking 1010883 as yet unmatched pairs. 37537 records in RAM.
INFO 2026-05-28 22:31:28 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 2s. Last read position: chr4:23,813,078
INFO 2026-05-28 22:31:28 MarkDuplicates Tracking 1009160 as yet unmatched pairs. 35777 records in RAM.
INFO 2026-05-28 22:31:30 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 2s. Last read position: chr4:39,862,904
INFO 2026-05-28 22:31:30 MarkDuplicates Tracking 1007175 as yet unmatched pairs. 33776 records in RAM.
INFO 2026-05-28 22:31:32 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 2s. Last read position: chr4:44,678,692
INFO 2026-05-28 22:31:32 MarkDuplicates Tracking 1005460 as yet unmatched pairs. 32040 records in RAM.
INFO 2026-05-28 22:31:34 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:06:39s. Time for last 1,000,000: 2s. Last read position: chr4:55,118,661
INFO 2026-05-28 22:31:34 MarkDuplicates Tracking 1003052 as yet unmatched pairs. 29615 records in RAM.
INFO 2026-05-28 22:31:36 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:06:41s. Time for last 1,000,000: 2s. Last read position: chr4:57,023,523
INFO 2026-05-28 22:31:36 MarkDuplicates Tracking 1001802 as yet unmatched pairs. 28353 records in RAM.
INFO 2026-05-28 22:31:38 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 2s. Last read position: chr4:57,110,158
INFO 2026-05-28 22:31:38 MarkDuplicates Tracking 1005014 as yet unmatched pairs. 31537 records in RAM.
INFO 2026-05-28 22:31:41 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 2s. Last read position: chr4:73,142,653
INFO 2026-05-28 22:31:41 MarkDuplicates Tracking 996982 as yet unmatched pairs. 23479 records in RAM.
INFO 2026-05-28 22:31:43 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr4:77,058,570
INFO 2026-05-28 22:31:43 MarkDuplicates Tracking 995251 as yet unmatched pairs. 21728 records in RAM.
INFO 2026-05-28 22:31:45 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 2s. Last read position: chr4:87,977,077
INFO 2026-05-28 22:31:45 MarkDuplicates Tracking 994830 as yet unmatched pairs. 21280 records in RAM.
INFO 2026-05-28 22:31:47 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr4:99,948,455
INFO 2026-05-28 22:31:47 MarkDuplicates Tracking 992111 as yet unmatched pairs. 18553 records in RAM.
INFO 2026-05-28 22:31:49 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 2s. Last read position: chr4:113,902,438
INFO 2026-05-28 22:31:49 MarkDuplicates Tracking 988950 as yet unmatched pairs. 15368 records in RAM.
INFO 2026-05-28 22:31:51 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr4:122,881,064
INFO 2026-05-28 22:31:51 MarkDuplicates Tracking 986674 as yet unmatched pairs. 13070 records in RAM.
INFO 2026-05-28 22:31:53 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 2s. Last read position: chr4:139,533,216
INFO 2026-05-28 22:31:53 MarkDuplicates Tracking 984433 as yet unmatched pairs. 10815 records in RAM.
INFO 2026-05-28 22:31:56 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 2s. Last read position: chr4:150,914,201
INFO 2026-05-28 22:31:56 MarkDuplicates Tracking 982985 as yet unmatched pairs. 9329 records in RAM.
INFO 2026-05-28 22:31:58 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr4:158,170,565
INFO 2026-05-28 22:31:58 MarkDuplicates Tracking 982978 as yet unmatched pairs. 9304 records in RAM.
INFO 2026-05-28 22:32:00 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:07:05s. Time for last 1,000,000: 1s. Last read position: chr4:168,915,977
INFO 2026-05-28 22:32:00 MarkDuplicates Tracking 979187 as yet unmatched pairs. 5492 records in RAM.
INFO 2026-05-28 22:32:02 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:07:07s. Time for last 1,000,000: 2s. Last read position: chr4:183,099,562
INFO 2026-05-28 22:32:02 MarkDuplicates Tracking 976765 as yet unmatched pairs. 3058 records in RAM.
INFO 2026-05-28 22:32:04 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 2s. Last read position: chr4:186,620,913
INFO 2026-05-28 22:32:04 MarkDuplicates Tracking 974717 as yet unmatched pairs. 994 records in RAM.
INFO 2026-05-28 22:32:07 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:07:12s. Time for last 1,000,000: 2s. Last read position: chr5:3,599,797
INFO 2026-05-28 22:32:07 MarkDuplicates Tracking 977101 as yet unmatched pairs. 70215 records in RAM.
INFO 2026-05-28 22:32:09 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:07:14s. Time for last 1,000,000: 2s. Last read position: chr5:14,143,866
INFO 2026-05-28 22:32:09 MarkDuplicates Tracking 972393 as yet unmatched pairs. 65487 records in RAM.
INFO 2026-05-28 22:32:11 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:07:16s. Time for last 1,000,000: 2s. Last read position: chr5:14,476,904
INFO 2026-05-28 22:32:11 MarkDuplicates Tracking 970430 as yet unmatched pairs. 63509 records in RAM.
INFO 2026-05-28 22:32:13 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:07:18s. Time for last 1,000,000: 2s. Last read position: chr5:32,090,661
INFO 2026-05-28 22:32:13 MarkDuplicates Tracking 965638 as yet unmatched pairs. 58703 records in RAM.
INFO 2026-05-28 22:32:16 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 2s. Last read position: chr5:38,881,592
INFO 2026-05-28 22:32:16 MarkDuplicates Tracking 963833 as yet unmatched pairs. 56886 records in RAM.
INFO 2026-05-28 22:32:18 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:07:23s. Time for last 1,000,000: 2s. Last read position: chr5:55,285,697
INFO 2026-05-28 22:32:18 MarkDuplicates Tracking 961551 as yet unmatched pairs. 54578 records in RAM.
INFO 2026-05-28 22:32:20 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr5:66,043,117
INFO 2026-05-28 22:32:20 MarkDuplicates Tracking 959673 as yet unmatched pairs. 52668 records in RAM.
INFO 2026-05-28 22:32:22 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 1s. Last read position: chr5:72,107,609
INFO 2026-05-28 22:32:22 MarkDuplicates Tracking 961348 as yet unmatched pairs. 54331 records in RAM.
INFO 2026-05-28 22:32:24 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 1s. Last read position: chr5:72,200,042
INFO 2026-05-28 22:32:24 MarkDuplicates Tracking 957363 as yet unmatched pairs. 50331 records in RAM.
INFO 2026-05-28 22:32:27 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:07:32s. Time for last 1,000,000: 2s. Last read position: chr5:75,581,359
INFO 2026-05-28 22:32:27 MarkDuplicates Tracking 954483 as yet unmatched pairs. 47442 records in RAM.
INFO 2026-05-28 22:32:29 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 2s. Last read position: chr5:83,057,020
INFO 2026-05-28 22:32:29 MarkDuplicates Tracking 952963 as yet unmatched pairs. 45897 records in RAM.
INFO 2026-05-28 22:32:32 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 2s. Last read position: chr5:84,327,743
INFO 2026-05-28 22:32:32 MarkDuplicates Tracking 951995 as yet unmatched pairs. 44913 records in RAM.
INFO 2026-05-28 22:32:34 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 2s. Last read position: chr5:96,662,381
INFO 2026-05-28 22:32:34 MarkDuplicates Tracking 949557 as yet unmatched pairs. 42462 records in RAM.
INFO 2026-05-28 22:32:36 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:07:41s. Time for last 1,000,000: 2s. Last read position: chr5:102,990,328
INFO 2026-05-28 22:32:36 MarkDuplicates Tracking 947134 as yet unmatched pairs. 40024 records in RAM.
INFO 2026-05-28 22:32:38 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:07:43s. Time for last 1,000,000: 2s. Last read position: chr5:115,841,452
INFO 2026-05-28 22:32:38 MarkDuplicates Tracking 944599 as yet unmatched pairs. 37468 records in RAM.
INFO 2026-05-28 22:32:41 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 2s. Last read position: chr5:128,174,574
INFO 2026-05-28 22:32:41 MarkDuplicates Tracking 942892 as yet unmatched pairs. 35750 records in RAM.
INFO 2026-05-28 22:32:43 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr5:133,991,038
INFO 2026-05-28 22:32:43 MarkDuplicates Tracking 941239 as yet unmatched pairs. 34085 records in RAM.
INFO 2026-05-28 22:32:45 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 2s. Last read position: chr5:138,164,919
INFO 2026-05-28 22:32:45 MarkDuplicates Tracking 938611 as yet unmatched pairs. 31450 records in RAM.
INFO 2026-05-28 22:32:47 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:07:52s. Time for last 1,000,000: 1s. Last read position: chr5:138,925,328
INFO 2026-05-28 22:32:47 MarkDuplicates Tracking 937265 as yet unmatched pairs. 30087 records in RAM.
INFO 2026-05-28 22:32:49 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:07:54s. Time for last 1,000,000: 2s. Last read position: chr5:140,690,885
INFO 2026-05-28 22:32:49 MarkDuplicates Tracking 934631 as yet unmatched pairs. 27368 records in RAM.
INFO 2026-05-28 22:32:51 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:07:56s. Time for last 1,000,000: 1s. Last read position: chr5:141,390,507
INFO 2026-05-28 22:32:51 MarkDuplicates Tracking 932596 as yet unmatched pairs. 25314 records in RAM.
INFO 2026-05-28 22:32:53 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:07:58s. Time for last 1,000,000: 1s. Last read position: chr5:141,978,337
INFO 2026-05-28 22:32:53 MarkDuplicates Tracking 930840 as yet unmatched pairs. 23539 records in RAM.
INFO 2026-05-28 22:32:55 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:08:00s. Time for last 1,000,000: 2s. Last read position: chr5:147,671,682
INFO 2026-05-28 22:32:55 MarkDuplicates Tracking 928422 as yet unmatched pairs. 21097 records in RAM.
INFO 2026-05-28 22:32:58 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 2s. Last read position: chr5:151,032,287
INFO 2026-05-28 22:32:58 MarkDuplicates Tracking 926315 as yet unmatched pairs. 18978 records in RAM.
INFO 2026-05-28 22:33:00 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:08:05s. Time for last 1,000,000: 2s. Last read position: chr5:154,790,705
INFO 2026-05-28 22:33:00 MarkDuplicates Tracking 924198 as yet unmatched pairs. 16840 records in RAM.
INFO 2026-05-28 22:33:02 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:08:07s. Time for last 1,000,000: 2s. Last read position: chr5:159,268,938
INFO 2026-05-28 22:33:02 MarkDuplicates Tracking 922064 as yet unmatched pairs. 14686 records in RAM.
INFO 2026-05-28 22:33:04 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:08:09s. Time for last 1,000,000: 1s. Last read position: chr5:168,247,083
INFO 2026-05-28 22:33:04 MarkDuplicates Tracking 921902 as yet unmatched pairs. 14506 records in RAM.
INFO 2026-05-28 22:33:06 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:08:11s. Time for last 1,000,000: 2s. Last read position: chr5:171,392,810
INFO 2026-05-28 22:33:06 MarkDuplicates Tracking 923096 as yet unmatched pairs. 15681 records in RAM.
INFO 2026-05-28 22:33:08 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:08:13s. Time for last 1,000,000: 2s. Last read position: chr5:176,352,729
INFO 2026-05-28 22:33:08 MarkDuplicates Tracking 916963 as yet unmatched pairs. 9536 records in RAM.
INFO 2026-05-28 22:33:10 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:08:15s. Time for last 1,000,000: 2s. Last read position: chr5:177,512,546
INFO 2026-05-28 22:33:10 MarkDuplicates Tracking 914054 as yet unmatched pairs. 6605 records in RAM.
INFO 2026-05-28 22:33:12 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:08:17s. Time for last 1,000,000: 2s. Last read position: chr5:179,766,156
INFO 2026-05-28 22:33:12 MarkDuplicates Tracking 912374 as yet unmatched pairs. 4910 records in RAM.
INFO 2026-05-28 22:33:15 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:08:20s. Time for last 1,000,000: 2s. Last read position: chr5:179,863,280
INFO 2026-05-28 22:33:15 MarkDuplicates Tracking 909358 as yet unmatched pairs. 1881 records in RAM.
INFO 2026-05-28 22:33:18 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:08:23s. Time for last 1,000,000: 3s. Last read position: chr6:2,779,350
INFO 2026-05-28 22:33:18 MarkDuplicates Tracking 907081 as yet unmatched pairs. 71112 records in RAM.
INFO 2026-05-28 22:33:21 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:08:26s. Time for last 1,000,000: 2s. Last read position: chr6:7,301,401
INFO 2026-05-28 22:33:21 MarkDuplicates Tracking 905720 as yet unmatched pairs. 69744 records in RAM.
INFO 2026-05-28 22:33:23 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:08:28s. Time for last 1,000,000: 2s. Last read position: chr6:15,522,969
INFO 2026-05-28 22:33:23 MarkDuplicates Tracking 902983 as yet unmatched pairs. 66992 records in RAM.
INFO 2026-05-28 22:33:25 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:08:30s. Time for last 1,000,000: 2s. Last read position: chr6:24,667,255
INFO 2026-05-28 22:33:25 MarkDuplicates Tracking 900886 as yet unmatched pairs. 64868 records in RAM.
INFO 2026-05-28 22:33:27 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:08:32s. Time for last 1,000,000: 2s. Last read position: chr6:26,198,904
INFO 2026-05-28 22:33:27 MarkDuplicates Tracking 899468 as yet unmatched pairs. 63434 records in RAM.
INFO 2026-05-28 22:33:29 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:08:34s. Time for last 1,000,000: 2s. Last read position: chr6:27,892,727
INFO 2026-05-28 22:33:29 MarkDuplicates Tracking 896967 as yet unmatched pairs. 60924 records in RAM.
INFO 2026-05-28 22:33:32 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:08:37s. Time for last 1,000,000: 2s. Last read position: chr6:30,583,650
INFO 2026-05-28 22:33:32 MarkDuplicates Tracking 895043 as yet unmatched pairs. 58992 records in RAM.
INFO 2026-05-28 22:33:34 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:08:39s. Time for last 1,000,000: 2s. Last read position: chr6:30,897,065
INFO 2026-05-28 22:33:34 MarkDuplicates Tracking 893050 as yet unmatched pairs. 56979 records in RAM.
INFO 2026-05-28 22:33:36 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:08:41s. Time for last 1,000,000: 2s. Last read position: chr6:31,632,706
INFO 2026-05-28 22:33:36 MarkDuplicates Tracking 890908 as yet unmatched pairs. 54827 records in RAM.
INFO 2026-05-28 22:33:38 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:08:43s. Time for last 1,000,000: 2s. Last read position: chr6:31,791,721
INFO 2026-05-28 22:33:38 MarkDuplicates Tracking 889087 as yet unmatched pairs. 52990 records in RAM.
INFO 2026-05-28 22:33:40 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:08:45s. Time for last 1,000,000: 2s. Last read position: chr6:32,976,012
INFO 2026-05-28 22:33:40 MarkDuplicates Tracking 886399 as yet unmatched pairs. 50295 records in RAM.
INFO 2026-05-28 22:33:43 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:08:48s. Time for last 1,000,000: 2s. Last read position: chr6:33,416,060
INFO 2026-05-28 22:33:43 MarkDuplicates Tracking 884352 as yet unmatched pairs. 48243 records in RAM.
INFO 2026-05-28 22:33:46 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:08:51s. Time for last 1,000,000: 2s. Last read position: chr6:35,241,559
INFO 2026-05-28 22:33:46 MarkDuplicates Tracking 883663 as yet unmatched pairs. 47542 records in RAM.
INFO 2026-05-28 22:33:48 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:08:53s. Time for last 1,000,000: 2s. Last read position: chr6:37,446,329
INFO 2026-05-28 22:33:48 MarkDuplicates Tracking 879842 as yet unmatched pairs. 43702 records in RAM.
INFO 2026-05-28 22:33:50 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:08:55s. Time for last 1,000,000: 2s. Last read position: chr6:43,020,886
INFO 2026-05-28 22:33:50 MarkDuplicates Tracking 877568 as yet unmatched pairs. 41401 records in RAM.
INFO 2026-05-28 22:33:52 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:08:57s. Time for last 1,000,000: 2s. Last read position: chr6:43,771,145
INFO 2026-05-28 22:33:52 MarkDuplicates Tracking 877186 as yet unmatched pairs. 41009 records in RAM.
INFO 2026-05-28 22:33:54 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:08:59s. Time for last 1,000,000: 2s. Last read position: chr6:52,264,735
INFO 2026-05-28 22:33:54 MarkDuplicates Tracking 873732 as yet unmatched pairs. 37538 records in RAM.
INFO 2026-05-28 22:33:57 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:09:02s. Time for last 1,000,000: 2s. Last read position: chr6:56,494,030
INFO 2026-05-28 22:33:57 MarkDuplicates Tracking 871994 as yet unmatched pairs. 35757 records in RAM.
INFO 2026-05-28 22:33:59 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:09:04s. Time for last 1,000,000: 2s. Last read position: chr6:56,636,649
INFO 2026-05-28 22:33:59 MarkDuplicates Tracking 869823 as yet unmatched pairs. 33581 records in RAM.
INFO 2026-05-28 22:34:01 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:09:06s. Time for last 1,000,000: 2s. Last read position: chr6:75,097,291
INFO 2026-05-28 22:34:01 MarkDuplicates Tracking 868315 as yet unmatched pairs. 32043 records in RAM.
INFO 2026-05-28 22:34:04 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:09:08s. Time for last 1,000,000: 2s. Last read position: chr6:83,195,229
INFO 2026-05-28 22:34:04 MarkDuplicates Tracking 865516 as yet unmatched pairs. 29231 records in RAM.
INFO 2026-05-28 22:34:06 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:09:11s. Time for last 1,000,000: 2s. Last read position: chr6:88,166,071
INFO 2026-05-28 22:34:06 MarkDuplicates Tracking 864260 as yet unmatched pairs. 27962 records in RAM.
INFO 2026-05-28 22:34:09 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:09:14s. Time for last 1,000,000: 3s. Last read position: chr6:100,606,977
INFO 2026-05-28 22:34:09 MarkDuplicates Tracking 861190 as yet unmatched pairs. 24872 records in RAM.
INFO 2026-05-28 22:34:11 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:09:16s. Time for last 1,000,000: 2s. Last read position: chr6:109,453,767
INFO 2026-05-28 22:34:11 MarkDuplicates Tracking 859937 as yet unmatched pairs. 23603 records in RAM.
INFO 2026-05-28 22:34:14 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 2s. Last read position: chr6:116,253,130
INFO 2026-05-28 22:34:14 MarkDuplicates Tracking 857003 as yet unmatched pairs. 20649 records in RAM.
INFO 2026-05-28 22:34:18 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:09:22s. Time for last 1,000,000: 3s. Last read position: chr6:125,076,696
INFO 2026-05-28 22:34:18 MarkDuplicates Tracking 855511 as yet unmatched pairs. 19130 records in RAM.
INFO 2026-05-28 22:34:21 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 3s. Last read position: chr6:131,951,116
INFO 2026-05-28 22:34:21 MarkDuplicates Tracking 853150 as yet unmatched pairs. 16753 records in RAM.
INFO 2026-05-28 22:34:24 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:09:29s. Time for last 1,000,000: 2s. Last read position: chr6:138,430,767
INFO 2026-05-28 22:34:24 MarkDuplicates Tracking 851353 as yet unmatched pairs. 14931 records in RAM.
INFO 2026-05-28 22:34:27 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 2s. Last read position: chr6:146,549,703
INFO 2026-05-28 22:34:27 MarkDuplicates Tracking 849062 as yet unmatched pairs. 12622 records in RAM.
INFO 2026-05-28 22:34:30 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 3s. Last read position: chr6:151,240,592
INFO 2026-05-28 22:34:30 MarkDuplicates Tracking 847190 as yet unmatched pairs. 10736 records in RAM.
INFO 2026-05-28 22:34:33 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:09:38s. Time for last 1,000,000: 2s. Last read position: chr6:156,836,207
INFO 2026-05-28 22:34:33 MarkDuplicates Tracking 844674 as yet unmatched pairs. 8208 records in RAM.
INFO 2026-05-28 22:34:35 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 2s. Last read position: chr6:158,770,822
INFO 2026-05-28 22:34:35 MarkDuplicates Tracking 842499 as yet unmatched pairs. 6024 records in RAM.
INFO 2026-05-28 22:34:37 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:09:42s. Time for last 1,000,000: 2s. Last read position: chr6:160,070,029
INFO 2026-05-28 22:34:37 MarkDuplicates Tracking 840899 as yet unmatched pairs. 4405 records in RAM.
INFO 2026-05-28 22:34:40 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 2s. Last read position: chr6:163,563,650
INFO 2026-05-28 22:34:40 MarkDuplicates Tracking 847422 as yet unmatched pairs. 10913 records in RAM.
INFO 2026-05-28 22:34:42 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:09:47s. Time for last 1,000,000: 2s. Last read position: chr6:170,582,135
INFO 2026-05-28 22:34:42 MarkDuplicates Tracking 836991 as yet unmatched pairs. 455 records in RAM.
INFO 2026-05-28 22:34:47 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 4s. Last read position: chr7:2,215,918
INFO 2026-05-28 22:34:47 MarkDuplicates Tracking 833946 as yet unmatched pairs. 77346 records in RAM.
INFO 2026-05-28 22:34:49 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:09:54s. Time for last 1,000,000: 2s. Last read position: chr7:4,079,533
INFO 2026-05-28 22:34:49 MarkDuplicates Tracking 831261 as yet unmatched pairs. 74641 records in RAM.
INFO 2026-05-28 22:34:51 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:09:56s. Time for last 1,000,000: 2s. Last read position: chr7:5,527,672
INFO 2026-05-28 22:34:51 MarkDuplicates Tracking 832219 as yet unmatched pairs. 75573 records in RAM.
INFO 2026-05-28 22:34:54 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:09:59s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,510
INFO 2026-05-28 22:34:54 MarkDuplicates Tracking 837360 as yet unmatched pairs. 80695 records in RAM.
INFO 2026-05-28 22:36:17 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 83s. Last read position: chr7:5,593,652
INFO 2026-05-28 22:36:17 MarkDuplicates Tracking 825156 as yet unmatched pairs. 68472 records in RAM.
INFO 2026-05-28 22:36:20 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 2s. Last read position: chr7:7,742,820
INFO 2026-05-28 22:36:20 MarkDuplicates Tracking 822226 as yet unmatched pairs. 65534 records in RAM.
INFO 2026-05-28 22:36:22 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 2s. Last read position: chr7:22,964,502
INFO 2026-05-28 22:36:22 MarkDuplicates Tracking 821661 as yet unmatched pairs. 64952 records in RAM.
INFO 2026-05-28 22:36:25 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 3s. Last read position: chr7:29,926,507
INFO 2026-05-28 22:36:25 MarkDuplicates Tracking 818494 as yet unmatched pairs. 61763 records in RAM.
INFO 2026-05-28 22:36:28 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:11:33s. Time for last 1,000,000: 2s. Last read position: chr7:35,872,723
INFO 2026-05-28 22:36:28 MarkDuplicates Tracking 816425 as yet unmatched pairs. 59681 records in RAM.
INFO 2026-05-28 22:36:31 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:11:36s. Time for last 1,000,000: 3s. Last read position: chr7:43,807,139
INFO 2026-05-28 22:36:31 MarkDuplicates Tracking 814130 as yet unmatched pairs. 57373 records in RAM.
INFO 2026-05-28 22:36:34 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 3s. Last read position: chr7:44,760,168
INFO 2026-05-28 22:36:34 MarkDuplicates Tracking 811995 as yet unmatched pairs. 55220 records in RAM.
INFO 2026-05-28 22:36:37 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 2s. Last read position: chr7:48,094,784
INFO 2026-05-28 22:36:37 MarkDuplicates Tracking 809978 as yet unmatched pairs. 53180 records in RAM.
INFO 2026-05-28 22:36:39 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 2s. Last read position: chr7:56,064,272
INFO 2026-05-28 22:36:39 MarkDuplicates Tracking 807413 as yet unmatched pairs. 50594 records in RAM.
INFO 2026-05-28 22:36:43 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:11:48s. Time for last 1,000,000: 3s. Last read position: chr7:70,789,913
INFO 2026-05-28 22:36:43 MarkDuplicates Tracking 805876 as yet unmatched pairs. 49031 records in RAM.
INFO 2026-05-28 22:36:45 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:11:50s. Time for last 1,000,000: 2s. Last read position: chr7:73,297,165
INFO 2026-05-28 22:36:45 MarkDuplicates Tracking 804255 as yet unmatched pairs. 47401 records in RAM.
INFO 2026-05-28 22:36:47 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 2s. Last read position: chr7:74,338,917
INFO 2026-05-28 22:36:47 MarkDuplicates Tracking 802596 as yet unmatched pairs. 45733 records in RAM.
INFO 2026-05-28 22:36:49 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr7:75,422,244
INFO 2026-05-28 22:36:49 MarkDuplicates Tracking 802870 as yet unmatched pairs. 46000 records in RAM.
INFO 2026-05-28 22:36:51 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 2s. Last read position: chr7:76,304,036
INFO 2026-05-28 22:36:51 MarkDuplicates Tracking 800250 as yet unmatched pairs. 43369 records in RAM.
INFO 2026-05-28 22:36:53 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 2s. Last read position: chr7:84,014,302
INFO 2026-05-28 22:36:53 MarkDuplicates Tracking 797206 as yet unmatched pairs. 40318 records in RAM.
INFO 2026-05-28 22:36:56 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 2s. Last read position: chr7:92,102,609
INFO 2026-05-28 22:36:56 MarkDuplicates Tracking 796136 as yet unmatched pairs. 39240 records in RAM.
INFO 2026-05-28 22:36:58 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 2s. Last read position: chr7:94,656,513
INFO 2026-05-28 22:36:58 MarkDuplicates Tracking 798403 as yet unmatched pairs. 41494 records in RAM.
INFO 2026-05-28 22:37:00 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 2s. Last read position: chr7:96,120,500
INFO 2026-05-28 22:37:00 MarkDuplicates Tracking 790897 as yet unmatched pairs. 33985 records in RAM.
INFO 2026-05-28 22:37:03 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 2s. Last read position: chr7:99,388,044
INFO 2026-05-28 22:37:03 MarkDuplicates Tracking 789048 as yet unmatched pairs. 32120 records in RAM.
INFO 2026-05-28 22:37:05 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 2s. Last read position: chr7:100,160,811
INFO 2026-05-28 22:37:05 MarkDuplicates Tracking 786811 as yet unmatched pairs. 29865 records in RAM.
INFO 2026-05-28 22:37:08 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 2s. Last read position: chr7:100,865,912
INFO 2026-05-28 22:37:08 MarkDuplicates Tracking 784560 as yet unmatched pairs. 27598 records in RAM.
INFO 2026-05-28 22:37:10 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 2s. Last read position: chr7:102,355,927
INFO 2026-05-28 22:37:10 MarkDuplicates Tracking 782387 as yet unmatched pairs. 25406 records in RAM.
INFO 2026-05-28 22:37:12 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:12:17s. Time for last 1,000,000: 1s. Last read position: chr7:103,307,602
INFO 2026-05-28 22:37:12 MarkDuplicates Tracking 781676 as yet unmatched pairs. 24685 records in RAM.
INFO 2026-05-28 22:37:14 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:12:19s. Time for last 1,000,000: 2s. Last read position: chr7:108,191,803
INFO 2026-05-28 22:37:14 MarkDuplicates Tracking 780272 as yet unmatched pairs. 23277 records in RAM.
INFO 2026-05-28 22:37:16 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 2s. Last read position: chr7:122,010,739
INFO 2026-05-28 22:37:16 MarkDuplicates Tracking 777973 as yet unmatched pairs. 20957 records in RAM.
INFO 2026-05-28 22:37:19 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 2s. Last read position: chr7:127,904,770
INFO 2026-05-28 22:37:19 MarkDuplicates Tracking 780144 as yet unmatched pairs. 23121 records in RAM.
INFO 2026-05-28 22:37:23 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 4s. Last read position: chr7:129,225,306
INFO 2026-05-28 22:37:23 MarkDuplicates Tracking 773411 as yet unmatched pairs. 16374 records in RAM.
INFO 2026-05-28 22:37:26 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 2s. Last read position: chr7:134,933,057
INFO 2026-05-28 22:37:26 MarkDuplicates Tracking 772012 as yet unmatched pairs. 14949 records in RAM.
INFO 2026-05-28 22:37:28 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 2s. Last read position: chr7:138,554,876
INFO 2026-05-28 22:37:28 MarkDuplicates Tracking 770133 as yet unmatched pairs. 13059 records in RAM.
INFO 2026-05-28 22:37:31 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 3s. Last read position: chr7:139,716,144
INFO 2026-05-28 22:37:31 MarkDuplicates Tracking 768405 as yet unmatched pairs. 11319 records in RAM.
INFO 2026-05-28 22:37:34 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 2s. Last read position: chr7:143,383,155
INFO 2026-05-28 22:37:34 MarkDuplicates Tracking 766198 as yet unmatched pairs. 9092 records in RAM.
INFO 2026-05-28 22:37:37 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:12:42s. Time for last 1,000,000: 3s. Last read position: chr7:150,371,227
INFO 2026-05-28 22:37:37 MarkDuplicates Tracking 764735 as yet unmatched pairs. 7615 records in RAM.
INFO 2026-05-28 22:37:40 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 2s. Last read position: chr7:151,224,832
INFO 2026-05-28 22:37:40 MarkDuplicates Tracking 760798 as yet unmatched pairs. 3667 records in RAM.
INFO 2026-05-28 22:37:42 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 2s. Last read position: chr7:155,764,007
INFO 2026-05-28 22:37:42 MarkDuplicates Tracking 758741 as yet unmatched pairs. 1590 records in RAM.
INFO 2026-05-28 22:37:46 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 3s. Last read position: chr8:9,680,734
INFO 2026-05-28 22:37:46 MarkDuplicates Tracking 756468 as yet unmatched pairs. 33831 records in RAM.
INFO 2026-05-28 22:37:48 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:12:53s. Time for last 1,000,000: 2s. Last read position: chr8:19,954,342
INFO 2026-05-28 22:37:48 MarkDuplicates Tracking 754344 as yet unmatched pairs. 31692 records in RAM.
INFO 2026-05-28 22:37:50 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 2s. Last read position: chr8:22,690,443
INFO 2026-05-28 22:37:50 MarkDuplicates Tracking 752088 as yet unmatched pairs. 29430 records in RAM.
INFO 2026-05-28 22:37:52 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 2s. Last read position: chr8:28,717,827
INFO 2026-05-28 22:37:52 MarkDuplicates Tracking 750096 as yet unmatched pairs. 27426 records in RAM.
INFO 2026-05-28 22:37:55 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 2s. Last read position: chr8:38,290,650
INFO 2026-05-28 22:37:55 MarkDuplicates Tracking 748094 as yet unmatched pairs. 25404 records in RAM.
INFO 2026-05-28 22:37:57 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:13:02s. Time for last 1,000,000: 2s. Last read position: chr8:41,497,590
INFO 2026-05-28 22:37:57 MarkDuplicates Tracking 746803 as yet unmatched pairs. 24103 records in RAM.
INFO 2026-05-28 22:38:00 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 2s. Last read position: chr8:47,957,230
INFO 2026-05-28 22:38:00 MarkDuplicates Tracking 744551 as yet unmatched pairs. 21845 records in RAM.
INFO 2026-05-28 22:38:03 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 3s. Last read position: chr8:66,429,427
INFO 2026-05-28 22:38:03 MarkDuplicates Tracking 742138 as yet unmatched pairs. 19413 records in RAM.
INFO 2026-05-28 22:38:06 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 2s. Last read position: chr8:80,705,231
INFO 2026-05-28 22:38:06 MarkDuplicates Tracking 740117 as yet unmatched pairs. 17372 records in RAM.
INFO 2026-05-28 22:38:09 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:13:14s. Time for last 1,000,000: 3s. Last read position: chr8:99,887,533
INFO 2026-05-28 22:38:09 MarkDuplicates Tracking 738714 as yet unmatched pairs. 15942 records in RAM.
INFO 2026-05-28 22:38:11 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 2s. Last read position: chr8:116,847,559
INFO 2026-05-28 22:38:11 MarkDuplicates Tracking 736890 as yet unmatched pairs. 14091 records in RAM.
INFO 2026-05-28 22:38:13 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 2s. Last read position: chr8:125,431,130
INFO 2026-05-28 22:38:13 MarkDuplicates Tracking 734339 as yet unmatched pairs. 11516 records in RAM.
INFO 2026-05-28 22:38:16 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:13:21s. Time for last 1,000,000: 3s. Last read position: chr8:140,706,140
INFO 2026-05-28 22:38:16 MarkDuplicates Tracking 732238 as yet unmatched pairs. 9379 records in RAM.
INFO 2026-05-28 22:38:20 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 3s. Last read position: chr8:143,917,772
INFO 2026-05-28 22:38:20 MarkDuplicates Tracking 731248 as yet unmatched pairs. 8374 records in RAM.
INFO 2026-05-28 22:38:23 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 3s. Last read position: chr8:143,938,217
INFO 2026-05-28 22:38:23 MarkDuplicates Tracking 728335 as yet unmatched pairs. 5450 records in RAM.
INFO 2026-05-28 22:38:28 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 4s. Last read position: chr8:144,473,124
INFO 2026-05-28 22:38:28 MarkDuplicates Tracking 725153 as yet unmatched pairs. 2261 records in RAM.
INFO 2026-05-28 22:38:33 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 4s. Last read position: chr9:2,650,463
INFO 2026-05-28 22:38:33 MarkDuplicates Tracking 722664 as yet unmatched pairs. 52181 records in RAM.
INFO 2026-05-28 22:38:36 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 3s. Last read position: chr9:9,442,114
INFO 2026-05-28 22:38:36 MarkDuplicates Tracking 725406 as yet unmatched pairs. 54882 records in RAM.
INFO 2026-05-28 22:38:40 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:13:45s. Time for last 1,000,000: 3s. Last read position: chr9:14,307,223
INFO 2026-05-28 22:38:40 MarkDuplicates Tracking 722569 as yet unmatched pairs. 52028 records in RAM.
INFO 2026-05-28 22:38:42 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 2s. Last read position: chr9:27,029,058
INFO 2026-05-28 22:38:42 MarkDuplicates Tracking 715849 as yet unmatched pairs. 45293 records in RAM.
INFO 2026-05-28 22:38:44 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:13:49s. Time for last 1,000,000: 2s. Last read position: chr9:34,400,945
INFO 2026-05-28 22:38:44 MarkDuplicates Tracking 713911 as yet unmatched pairs. 43326 records in RAM.
INFO 2026-05-28 22:38:47 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:13:52s. Time for last 1,000,000: 2s. Last read position: chr9:35,703,886
INFO 2026-05-28 22:38:47 MarkDuplicates Tracking 713939 as yet unmatched pairs. 43332 records in RAM.
INFO 2026-05-28 22:38:50 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:13:55s. Time for last 1,000,000: 2s. Last read position: chr9:37,428,489
INFO 2026-05-28 22:38:50 MarkDuplicates Tracking 709417 as yet unmatched pairs. 38754 records in RAM.
INFO 2026-05-28 22:38:52 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:13:57s. Time for last 1,000,000: 2s. Last read position: chr9:66,148,969
INFO 2026-05-28 22:38:52 MarkDuplicates Tracking 707794 as yet unmatched pairs. 37120 records in RAM.
INFO 2026-05-28 22:38:55 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:14:00s. Time for last 1,000,000: 3s. Last read position: chr9:77,221,271
INFO 2026-05-28 22:38:55 MarkDuplicates Tracking 706210 as yet unmatched pairs. 35518 records in RAM.
INFO 2026-05-28 22:38:57 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 2s. Last read position: chr9:92,240,946
INFO 2026-05-28 22:38:57 MarkDuplicates Tracking 704357 as yet unmatched pairs. 33652 records in RAM.
INFO 2026-05-28 22:39:00 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 2s. Last read position: chr9:96,937,058
INFO 2026-05-28 22:39:00 MarkDuplicates Tracking 702201 as yet unmatched pairs. 31485 records in RAM.
INFO 2026-05-28 22:39:02 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 2s. Last read position: chr9:106,928,755
INFO 2026-05-28 22:39:02 MarkDuplicates Tracking 700862 as yet unmatched pairs. 30117 records in RAM.
INFO 2026-05-28 22:39:04 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 2s. Last read position: chr9:113,565,487
INFO 2026-05-28 22:39:04 MarkDuplicates Tracking 698129 as yet unmatched pairs. 27373 records in RAM.
INFO 2026-05-28 22:39:06 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:14:11s. Time for last 1,000,000: 2s. Last read position: chr9:115,086,657
INFO 2026-05-28 22:39:06 MarkDuplicates Tracking 697250 as yet unmatched pairs. 26485 records in RAM.
INFO 2026-05-28 22:39:10 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:14:15s. Time for last 1,000,000: 3s. Last read position: chr9:122,858,753
INFO 2026-05-28 22:39:10 MarkDuplicates Tracking 694200 as yet unmatched pairs. 23414 records in RAM.
INFO 2026-05-28 22:39:13 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:14:18s. Time for last 1,000,000: 3s. Last read position: chr9:127,444,937
INFO 2026-05-28 22:39:13 MarkDuplicates Tracking 691869 as yet unmatched pairs. 21061 records in RAM.
INFO 2026-05-28 22:39:16 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 2s. Last read position: chr9:128,257,471
INFO 2026-05-28 22:39:16 MarkDuplicates Tracking 689474 as yet unmatched pairs. 18657 records in RAM.
INFO 2026-05-28 22:39:18 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:14:23s. Time for last 1,000,000: 2s. Last read position: chr9:128,908,919
INFO 2026-05-28 22:39:18 MarkDuplicates Tracking 687646 as yet unmatched pairs. 16814 records in RAM.
INFO 2026-05-28 22:39:22 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 3s. Last read position: chr9:130,835,484
INFO 2026-05-28 22:39:22 MarkDuplicates Tracking 686688 as yet unmatched pairs. 15838 records in RAM.
INFO 2026-05-28 22:39:24 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 2s. Last read position: chr9:131,522,046
INFO 2026-05-28 22:39:24 MarkDuplicates Tracking 682991 as yet unmatched pairs. 12130 records in RAM.
INFO 2026-05-28 22:39:26 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:14:31s. Time for last 1,000,000: 2s. Last read position: chr9:133,778,852
INFO 2026-05-28 22:39:26 MarkDuplicates Tracking 681202 as yet unmatched pairs. 10336 records in RAM.
INFO 2026-05-28 22:39:29 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:14:34s. Time for last 1,000,000: 2s. Last read position: chr9:135,821,560
INFO 2026-05-28 22:39:29 MarkDuplicates Tracking 678577 as yet unmatched pairs. 7697 records in RAM.
INFO 2026-05-28 22:39:31 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:14:36s. Time for last 1,000,000: 2s. Last read position: chr9:136,523,792
INFO 2026-05-28 22:39:31 MarkDuplicates Tracking 676236 as yet unmatched pairs. 5343 records in RAM.