Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/43/89c50b667e52ef889fb4787e14d66c/786-O_FFPE_RNA_0001_B23LG7FLT4_2.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-6ef41cd9-2e18-4687-842c-3f6f49c5643f/e6/b0f48d6d7a697674824d761d17ce05/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/192e0a605bcde0da3c1f7ad6bc28a9/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/192e0a605bcde0da3c1f7ad6bc28a9/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cf/983aaff45912c69da69410ae686b36/786-O_FFPE_RNA_0001_B23LG7FLT4_2.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
LRP1B--AC078882.1
starfusion
arriba
CENPU--ENPP6
starfusion
arriba
LMNA--MEX3A
starfusion
DHX38--AMPD1
starfusion
arriba
BNC2--AL358117.1
starfusion
arriba
ZKSCAN7--KIF15
starfusion
arriba
AC008969.1--SMARCA4
starfusion
arriba
ARHGEF3--RRP9
starfusion
arriba
TLK2--AC240565.1
starfusion
GUSBP13--NAIP
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
HIF1A--SNAPC1
arriba
TRIM33--TRIM33
arriba
TMED7--TICAM2
arriba
TVP23C--CDRT4
arriba
ATAD2B--KLHL29
arriba
CCDC169--SOHLH2
arriba
HMGB3P23--ACO1
arriba
RNA5SP281--ACO1
arriba
0%| | 0/28 [00:00<?, ?it/s]
Processing LRP1B--AC078882.1: 0%| | 0/28 [00:00<?, ?it/s]
Processing LRP1B--AC078882.1: 4%|▎ | 1/28 [00:00<00:02, 9.26it/s]
Processing CENPU--ENPP6: 4%|▎ | 1/28 [00:00<00:02, 9.26it/s]
Processing CENPU--ENPP6: 7%|▋ | 2/28 [00:00<00:02, 9.48it/s]
Processing LMNA--MEX3A: 7%|▋ | 2/28 [00:00<00:02, 9.48it/s]
Processing LMNA--MEX3A: 11%|█ | 3/28 [00:00<00:02, 9.56it/s]
Processing DHX38--AMPD1: 11%|█ | 3/28 [00:00<00:02, 9.56it/s]
Processing DHX38--AMPD1: 14%|█▍ | 4/28 [00:00<00:02, 9.57it/s]
Processing BNC2--AL358117.1: 14%|█▍ | 4/28 [00:00<00:02, 9.57it/s]
Processing BNC2--AL358117.1: 18%|█▊ | 5/28 [00:00<00:02, 9.58it/s]
Processing ZKSCAN7--KIF15: 18%|█▊ | 5/28 [00:00<00:02, 9.58it/s]
Processing ZKSCAN7--KIF15: 21%|██▏ | 6/28 [00:00<00:02, 9.59it/s]
Processing AC008969.1--SMARCA4: 21%|██▏ | 6/28 [00:00<00:02, 9.59it/s]
Processing AC008969.1--SMARCA4: 25%|██▌ | 7/28 [00:00<00:02, 9.59it/s]
Processing ARHGEF3--RRP9: 25%|██▌ | 7/28 [00:00<00:02, 9.59it/s]
Processing ARHGEF3--RRP9: 29%|██▊ | 8/28 [00:00<00:02, 9.60it/s]
Processing TLK2--AC240565.1: 29%|██▊ | 8/28 [00:00<00:02, 9.60it/s]
Processing TLK2--AC240565.1: 32%|███▏ | 9/28 [00:00<00:01, 9.60it/s]
Processing GUSBP13--NAIP: 32%|███▏ | 9/28 [00:00<00:01, 9.60it/s]
Processing GUSBP13--NAIP: 36%|███▌ | 10/28 [00:01<00:01, 9.60it/s]
Processing PCDHGB2--PCDHGA8: 36%|███▌ | 10/28 [00:01<00:01, 9.60it/s]
Processing PCDHGB2--PCDHGA8: 39%|███▉ | 11/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGB6: 39%|███▉ | 11/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGB6: 43%|████▎ | 12/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGC4: 43%|████▎ | 12/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGC4: 46%|████▋ | 13/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGC5: 46%|████▋ | 13/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGC5: 50%|█████ | 14/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGA11: 50%|█████ | 14/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGA11: 54%|█████▎ | 15/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGA10: 54%|█████▎ | 15/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGA10: 57%|█████▋ | 16/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGA12: 57%|█████▋ | 16/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGA12: 61%|██████ | 17/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGB7: 61%|██████ | 17/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGB7: 64%|██████▍ | 18/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGA9: 64%|██████▍ | 18/28 [00:01<00:01, 9.61it/s]
Processing PCDHGB2--PCDHGA9: 68%|██████▊ | 19/28 [00:01<00:00, 9.60it/s]
Processing PCDHGB2--PCDHGC3: 68%|██████▊ | 19/28 [00:01<00:00, 9.60it/s]
Processing PCDHGB2--PCDHGC3: 71%|███████▏ | 20/28 [00:02<00:00, 9.61it/s]
Processing HIF1A--SNAPC1: 71%|███████▏ | 20/28 [00:02<00:00, 9.61it/s]
Processing HIF1A--SNAPC1: 75%|███████▌ | 21/28 [00:02<00:00, 9.61it/s]
Processing TRIM33--TRIM33: 75%|███████▌ | 21/28 [00:02<00:00, 9.61it/s]
Processing TRIM33--TRIM33: 79%|███████▊ | 22/28 [00:02<00:00, 9.61it/s]
Processing TMED7--TICAM2: 79%|███████▊ | 22/28 [00:02<00:00, 9.61it/s]
Processing TMED7--TICAM2: 82%|████████▏ | 23/28 [00:02<00:00, 9.61it/s]
Processing TVP23C--CDRT4: 82%|████████▏ | 23/28 [00:02<00:00, 9.61it/s]
Processing TVP23C--CDRT4: 86%|████████▌ | 24/28 [00:02<00:00, 9.61it/s]
Processing ATAD2B--KLHL29: 86%|████████▌ | 24/28 [00:02<00:00, 9.61it/s]
Processing ATAD2B--KLHL29: 89%|████████▉ | 25/28 [00:02<00:00, 9.61it/s]
Processing CCDC169--SOHLH2: 89%|████████▉ | 25/28 [00:02<00:00, 9.61it/s]
Processing CCDC169--SOHLH2: 93%|█████████▎| 26/28 [00:02<00:00, 9.61it/s]
Processing HMGB3P23--ACO1: 93%|█████████▎| 26/28 [00:02<00:00, 9.61it/s]
Processing HMGB3P23--ACO1: 96%|█████████▋| 27/28 [00:02<00:00, 9.61it/s]
Processing RNA5SP281--ACO1: 96%|█████████▋| 27/28 [00:02<00:00, 9.61it/s]
Processing RNA5SP281--ACO1: 100%|██████████| 28/28 [00:02<00:00, 9.61it/s]
Processing RNA5SP281--ACO1: 100%|██████████| 28/28 [00:02<00:00, 9.60it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory