Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-6ef41cd9-2e18-4687-842c-3f6f49c5643f/e6/b0f48d6d7a697674824d761d17ce05/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/bfb2f6f09f007cadce0d15304259bb/A673_FFPE_RNA_0001_B23LG7FLT4_3.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/d6cd878616aaa848bb8f90b152acdd/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/d6cd878616aaa848bb8f90b152acdd/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/d6e029a0505a48bed2e10f377b433e/A673_FFPE_RNA_0001_B23LG7FLT4_3.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
EWSR1--FLI1
starfusion
arriba
SMURF2P1--SP2
starfusion
arriba
SUPT20H--CHRDL2
starfusion
arriba
CYP7B1--LINC01414
starfusion
arriba
ZNF875--PCSK2
starfusion
ACKR2--PCSK2
starfusion
AC096555.1--PCSK2
starfusion
TLK2--AC240565.1
starfusion
PCDHGA6--PCDHGA8
arriba
PCDHGA6--PCDHGA10
arriba
PCDHGA6--PCDHGC5
arriba
PCDHGA6--PCDHGC4
arriba
PCDHGA6--PCDHGB6
arriba
PCDHGA6--PCDHGB7
arriba
PCDHGA6--PCDHGA12
arriba
PCDHGA6--PCDHGC3
arriba
PCDHGA6--PCDHGA9
arriba
PCDHGA6--PCDHGA11
arriba
PCDHA11--PCDHAC1
arriba
PCDHA11--PCDHAC2
arriba
PCDHA11--PCDHA13
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC1
arriba
PCDHA6--PCDHAC2
arriba
SPG7--PLSCR5
arriba
SPG7--AC092957.1
arriba
PCDHA8--PCDHA10
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA11
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHA10--PCDHA13
arriba
CCDC169--SOHLH2
arriba
SUCLA2--AL158828.1
arriba
SUCLA2--AL353613.1
arriba
TMEM132B--TDG
arriba
AP005597.1--OR4A16
arriba
OR4A11P--OR4A16
arriba
IGH@-ext--SPG7
arriba
IGH-@-ext--SPG7
arriba
SOGA3--KIAA0408
arriba
ITGA9--AC108752.1
arriba
ITGA9--MRPS17P3
arriba
FRG1DP--MLLT10P1
arriba
FRG1DP--5_8S_rRNA
arriba
0%| | 0/53 [00:00<?, ?it/s]
Processing EWSR1--FLI1: 0%| | 0/53 [00:00<?, ?it/s]
Processing EWSR1--FLI1: 2%|▏ | 1/53 [00:00<00:05, 9.02it/s]
Processing SMURF2P1--SP2: 2%|▏ | 1/53 [00:00<00:05, 9.02it/s]
Processing SMURF2P1--SP2: 4%|▍ | 2/53 [00:00<00:05, 9.29it/s]
Processing SUPT20H--CHRDL2: 4%|▍ | 2/53 [00:00<00:05, 9.29it/s]
Processing SUPT20H--CHRDL2: 6%|▌ | 3/53 [00:00<00:05, 9.37it/s]
Processing CYP7B1--LINC01414: 6%|▌ | 3/53 [00:00<00:05, 9.37it/s]
Processing CYP7B1--LINC01414: 8%|▊ | 4/53 [00:00<00:05, 9.40it/s]
Processing ZNF875--PCSK2: 8%|▊ | 4/53 [00:00<00:05, 9.40it/s]
Processing ZNF875--PCSK2: 9%|▉ | 5/53 [00:00<00:05, 9.43it/s]
Processing ACKR2--PCSK2: 9%|▉ | 5/53 [00:00<00:05, 9.43it/s]
Processing ACKR2--PCSK2: 11%|█▏ | 6/53 [00:00<00:04, 9.41it/s]
Processing AC096555.1--PCSK2: 11%|█▏ | 6/53 [00:00<00:04, 9.41it/s]
Processing AC096555.1--PCSK2: 13%|█▎ | 7/53 [00:00<00:04, 9.41it/s]
Processing TLK2--AC240565.1: 13%|█▎ | 7/53 [00:00<00:04, 9.41it/s]
Processing TLK2--AC240565.1: 15%|█▌ | 8/53 [00:00<00:04, 9.42it/s]
Processing PCDHGA6--PCDHGA8: 15%|█▌ | 8/53 [00:00<00:04, 9.42it/s]
Processing PCDHGA6--PCDHGA8: 17%|█▋ | 9/53 [00:00<00:04, 9.44it/s]
Processing PCDHGA6--PCDHGA10: 17%|█▋ | 9/53 [00:00<00:04, 9.44it/s]
Processing PCDHGA6--PCDHGA10: 19%|█▉ | 10/53 [00:01<00:04, 9.42it/s]
Processing PCDHGA6--PCDHGC5: 19%|█▉ | 10/53 [00:01<00:04, 9.42it/s]
Processing PCDHGA6--PCDHGC5: 21%|██ | 11/53 [00:01<00:04, 9.44it/s]
Processing PCDHGA6--PCDHGC4: 21%|██ | 11/53 [00:01<00:04, 9.44it/s]
Processing PCDHGA6--PCDHGC4: 23%|██▎ | 12/53 [00:01<00:04, 9.44it/s]
Processing PCDHGA6--PCDHGB6: 23%|██▎ | 12/53 [00:01<00:04, 9.44it/s]
Processing PCDHGA6--PCDHGB6: 25%|██▍ | 13/53 [00:01<00:04, 9.45it/s]
Processing PCDHGA6--PCDHGB7: 25%|██▍ | 13/53 [00:01<00:04, 9.45it/s]
Processing PCDHGA6--PCDHGB7: 26%|██▋ | 14/53 [00:01<00:04, 9.46it/s]
Processing PCDHGA6--PCDHGA12: 26%|██▋ | 14/53 [00:01<00:04, 9.46it/s]
Processing PCDHGA6--PCDHGA12: 28%|██▊ | 15/53 [00:01<00:04, 9.41it/s]
Processing PCDHGA6--PCDHGC3: 28%|██▊ | 15/53 [00:01<00:04, 9.41it/s]
Processing PCDHGA6--PCDHGC3: 30%|███ | 16/53 [00:01<00:03, 9.38it/s]
Processing PCDHGA6--PCDHGA9: 30%|███ | 16/53 [00:01<00:03, 9.38it/s]
Processing PCDHGA6--PCDHGA9: 32%|███▏ | 17/53 [00:01<00:03, 9.36it/s]
Processing PCDHGA6--PCDHGA11: 32%|███▏ | 17/53 [00:01<00:03, 9.36it/s]
Processing PCDHGA6--PCDHGA11: 34%|███▍ | 18/53 [00:01<00:03, 9.35it/s]
Processing PCDHA11--PCDHAC1: 34%|███▍ | 18/53 [00:01<00:03, 9.35it/s]
Processing PCDHA11--PCDHAC1: 36%|███▌ | 19/53 [00:02<00:03, 9.34it/s]
Processing PCDHA11--PCDHAC2: 36%|███▌ | 19/53 [00:02<00:03, 9.34it/s]
Processing PCDHA11--PCDHAC2: 38%|███▊ | 20/53 [00:02<00:03, 9.34it/s]
Processing PCDHA11--PCDHA13: 38%|███▊ | 20/53 [00:02<00:03, 9.34it/s]
Processing PCDHA11--PCDHA13: 40%|███▉ | 21/53 [00:02<00:03, 9.34it/s]
Processing PCDHA6--PCDHA13: 40%|███▉ | 21/53 [00:02<00:03, 9.34it/s]
Processing PCDHA6--PCDHA13: 42%|████▏ | 22/53 [00:02<00:03, 9.34it/s]
Processing PCDHA6--PCDHAC1: 42%|████▏ | 22/53 [00:02<00:03, 9.34it/s]
Processing PCDHA6--PCDHAC1: 43%|████▎ | 23/53 [00:02<00:03, 9.35it/s]
Processing PCDHA6--PCDHAC2: 43%|████▎ | 23/53 [00:02<00:03, 9.35it/s]
Processing PCDHA6--PCDHAC2: 45%|████▌ | 24/53 [00:02<00:03, 9.35it/s]
Processing SPG7--PLSCR5: 45%|████▌ | 24/53 [00:02<00:03, 9.35it/s]
Processing SPG7--PLSCR5: 47%|████▋ | 25/53 [00:02<00:02, 9.34it/s]
Processing SPG7--AC092957.1: 47%|████▋ | 25/53 [00:02<00:02, 9.34it/s]
Processing SPG7--AC092957.1: 49%|████▉ | 26/53 [00:02<00:02, 9.37it/s]
Processing PCDHA8--PCDHA10: 49%|████▉ | 26/53 [00:02<00:02, 9.37it/s]
Processing PCDHA8--PCDHA10: 51%|█████ | 27/53 [00:02<00:02, 9.38it/s]
Processing PCDHGB2--PCDHGA8: 51%|█████ | 27/53 [00:02<00:02, 9.38it/s]
Processing PCDHGB2--PCDHGA8: 53%|█████▎ | 28/53 [00:02<00:02, 9.36it/s]
Processing PCDHGB2--PCDHGA10: 53%|█████▎ | 28/53 [00:02<00:02, 9.36it/s]
Processing PCDHGB2--PCDHGA10: 55%|█████▍ | 29/53 [00:03<00:02, 9.35it/s]
Processing PCDHGB2--PCDHGC5: 55%|█████▍ | 29/53 [00:03<00:02, 9.35it/s]
Processing PCDHGB2--PCDHGC5: 57%|█████▋ | 30/53 [00:03<00:02, 9.34it/s]
Processing PCDHGB2--PCDHGC4: 57%|█████▋ | 30/53 [00:03<00:02, 9.34it/s]
Processing PCDHGB2--PCDHGC4: 58%|█████▊ | 31/53 [00:03<00:02, 9.34it/s]
Processing PCDHGB2--PCDHGB6: 58%|█████▊ | 31/53 [00:03<00:02, 9.34it/s]
Processing PCDHGB2--PCDHGB6: 60%|██████ | 32/53 [00:03<00:02, 9.34it/s]
Processing PCDHGB2--PCDHGB7: 60%|██████ | 32/53 [00:03<00:02, 9.34it/s]
Processing PCDHGB2--PCDHGB7: 62%|██████▏ | 33/53 [00:03<00:02, 9.35it/s]
Processing PCDHGB2--PCDHGA12: 62%|██████▏ | 33/53 [00:03<00:02, 9.35it/s]
Processing PCDHGB2--PCDHGA12: 64%|██████▍ | 34/53 [00:03<00:02, 9.35it/s]
Processing PCDHGB2--PCDHGC3: 64%|██████▍ | 34/53 [00:03<00:02, 9.35it/s]
Processing PCDHGB2--PCDHGC3: 66%|██████▌ | 35/53 [00:03<00:01, 9.35it/s]
Processing PCDHGB2--PCDHGA9: 66%|██████▌ | 35/53 [00:03<00:01, 9.35it/s]
Processing PCDHGB2--PCDHGA9: 68%|██████▊ | 36/53 [00:03<00:01, 9.35it/s]
Processing PCDHGB2--PCDHGA11: 68%|██████▊ | 36/53 [00:03<00:01, 9.35it/s]
Processing PCDHGB2--PCDHGA11: 70%|██████▉ | 37/53 [00:03<00:01, 9.35it/s]
Processing PCDHA10--PCDHAC2: 70%|██████▉ | 37/53 [00:03<00:01, 9.35it/s]
Processing PCDHA10--PCDHAC2: 72%|███████▏ | 38/53 [00:04<00:01, 9.36it/s]
Processing PCDHA10--PCDHAC1: 72%|███████▏ | 38/53 [00:04<00:01, 9.36it/s]
Processing PCDHA10--PCDHAC1: 74%|███████▎ | 39/53 [00:04<00:01, 9.33it/s]
Processing PCDHA10--PCDHA13: 74%|███████▎ | 39/53 [00:04<00:01, 9.33it/s]
Processing PCDHA10--PCDHA13: 75%|███████▌ | 40/53 [00:04<00:01, 9.37it/s]
Processing CCDC169--SOHLH2: 75%|███████▌ | 40/53 [00:04<00:01, 9.37it/s]
Processing CCDC169--SOHLH2: 77%|███████▋ | 41/53 [00:04<00:01, 9.38it/s]
Processing SUCLA2--AL158828.1: 77%|███████▋ | 41/53 [00:04<00:01, 9.38it/s]
Processing SUCLA2--AL158828.1: 79%|███████▉ | 42/53 [00:04<00:01, 9.36it/s]
Processing SUCLA2--AL353613.1: 79%|███████▉ | 42/53 [00:04<00:01, 9.36it/s]
Processing SUCLA2--AL353613.1: 81%|████████ | 43/53 [00:04<00:01, 9.36it/s]
Processing TMEM132B--TDG: 81%|████████ | 43/53 [00:04<00:01, 9.36it/s]
Processing TMEM132B--TDG: 83%|████████▎ | 44/53 [00:04<00:00, 9.39it/s]
Processing AP005597.1--OR4A16: 83%|████████▎ | 44/53 [00:04<00:00, 9.39it/s]
Processing AP005597.1--OR4A16: 85%|████████▍ | 45/53 [00:04<00:00, 9.40it/s]
Processing OR4A11P--OR4A16: 85%|████████▍ | 45/53 [00:04<00:00, 9.40it/s]
Processing OR4A11P--OR4A16: 87%|████████▋ | 46/53 [00:04<00:00, 9.38it/s]
Processing IGH@-ext--SPG7: 87%|████████▋ | 46/53 [00:04<00:00, 9.38it/s]
Processing IGH@-ext--SPG7: 89%|████████▊ | 47/53 [00:05<00:00, 9.37it/s]
Processing IGH-@-ext--SPG7: 89%|████████▊ | 47/53 [00:05<00:00, 9.37it/s]
Processing IGH-@-ext--SPG7: 91%|█████████ | 48/53 [00:05<00:00, 9.37it/s]
Processing SOGA3--KIAA0408: 91%|█████████ | 48/53 [00:05<00:00, 9.37it/s]
Processing SOGA3--KIAA0408: 92%|█████████▏| 49/53 [00:05<00:00, 9.36it/s]
Processing ITGA9--AC108752.1: 92%|█████████▏| 49/53 [00:05<00:00, 9.36it/s]
Processing ITGA9--AC108752.1: 94%|█████████▍| 50/53 [00:05<00:00, 9.36it/s]
Processing ITGA9--MRPS17P3: 94%|█████████▍| 50/53 [00:05<00:00, 9.36it/s]
Processing ITGA9--MRPS17P3: 96%|█████████▌| 51/53 [00:05<00:00, 9.29it/s]
Processing FRG1DP--MLLT10P1: 96%|█████████▌| 51/53 [00:05<00:00, 9.29it/s]
Processing FRG1DP--MLLT10P1: 98%|█████████▊| 52/53 [00:05<00:00, 9.34it/s]
Processing FRG1DP--5_8S_rRNA: 98%|█████████▊| 52/53 [00:05<00:00, 9.34it/s]
Processing FRG1DP--5_8S_rRNA: 100%|██████████| 53/53 [00:05<00:00, 9.37it/s]
Processing FRG1DP--5_8S_rRNA: 100%|██████████| 53/53 [00:05<00:00, 9.37it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory