Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2e/0a564da64801430f766c7668398f5b/786-O_FFPE_RNA_0001_B23LG7FLT4_2.Aligned.sortedByCoord.out.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/1098ff3f515c7c5da678182d0c947d/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/1098ff3f515c7c5da678182d0c947d/.command.run
==> STAGING COMPLETE (3 inputs)
PAIRED_END_BAM_INPUT
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paired = 291944200
unpaired = 4761962
MERGED PAIRED END READS = 291944200
MATES PROCESSED = 588650362
TOTAL READS = 296706162
DISTINCT READS = 1.65358e+08
DISTINCT COUNTS = 761
MAX COUNT = 964017
COUNTS OF 1 = 1.07354e+08
MAX TERMS = 100
OBSERVED COUNTS (964018)
1 107354457
2 33274827
3 12112001
4 5175929
5 2559727
6 1431683
7 880508
8 580827
9 403441
10 292729
11 219978
12 167952
13 132019
14 105451
15 85448
16 70417
17 58586
18 49450
19 41732
20 35675
21 30808
22 26529
23 23636
24 20424
25 18027
26 16054
27 14258
28 12645
29 11793
30 10236
31 9400
32 8527
33 7820
34 7022
35 6463
36 5893
37 5257
38 4937
39 4504
40 4310
41 4003
42 3669
43 3344
44 3094
45 3027
46 2667
47 2542
48 2327
49 2265
50 2135
51 2031
52 1889
53 1760
54 1617
55 1551
56 1530
57 1438
58 1307
59 1309
60 1195
61 1152
62 1026
63 1069
64 985
65 950
66 949
67 847
68 813
69 737
70 768
71 689
72 653
73 575
74 600
75 614
76 572
77 541
78 503
79 495
80 483
81 493
82 435
83 439
84 452
85 367
86 378
87 371
88 351
89 335
90 311
91 328
92 311
93 338
94 288
95 266
96 270
97 235
98 267
99 250
100 254
101 201
102 242
103 232
104 214
105 203
106 199
107 190
108 187
109 199
110 186
111 181
112 173
113 165
114 165
115 156
116 153
117 156
118 136
119 132
120 153
121 107
122 124
123 130
124 117
125 115
126 107
127 105
128 88
129 82
130 95
131 111
132 81
133 116
134 97
135 93
136 93
137 101
138 100
139 72
140 93
141 77
142 69
143 87
144 76
145 63
146 60
147 71
148 72
149 62
150 61
151 57
152 55
153 67
154 53
155 54
156 64
157 47
158 37
159 49
160 43
161 43
162 52
163 57
164 50
165 52
166 57
167 36
168 33
169 36
170 35
171 31
172 39
173 40
174 41
175 27
176 28
177 37
178 35
179 31
180 44
181 39
182 33
183 29
184 27
185 30
186 30
187 23
188 40
189 27
190 26
191 39
192 27
193 31
194 29
195 24
196 27
197 28
198 23
199 29
200 26
201 16
202 25
203 17
204 21
205 22
206 24
207 26
208 23
209 24
210 34
211 25
212 18
213 23
214 26
215 24
216 16
217 17
218 16
219 18
220 20
221 31
222 13
223 22
224 7
225 13
226 17
227 13
228 18
229 24
230 16
231 20
232 9
233 20
234 13
235 16
236 17
237 13
238 21
239 20
240 14
241 10
242 16
243 11
244 13
245 12
246 17
247 16
248 11
249 18
250 21
251 7
252 9
253 8
254 11
255 20
256 16
257 10
258 15
259 5
260 7
261 14
262 17
263 7
264 5
265 5
266 11
267 11
268 11
269 10
270 11
271 6
272 3
273 6
274 7
275 10
276 12
277 12
278 9
279 14
280 10
281 9
282 7
283 12
284 12
285 11
286 10
287 5
288 11
289 9
290 10
291 6
292 5
293 7
294 7
295 7
296 8
297 4
298 7
299 10
300 4
301 5
302 2
303 5
304 2
305 1
306 4
307 10
308 8
309 6
310 5
311 4
312 7
313 3
314 11
315 3
316 6
317 5
318 4
319 2
320 5
321 6
322 5
323 7
324 6
325 7
326 3
327 7
328 3
329 1
330 6
331 9
332 2
333 5
334 5
335 5
336 9
337 5
338 5
339 4
340 9
341 2
342 7
343 1
344 3
345 2
346 4
347 5
348 6
349 4
350 6
351 4
352 2
353 2
354 3
355 4
356 1
357 2
358 4
359 5
360 5
361 1
362 5
363 2
364 1
365 2
366 1
367 6
368 3
369 6
370 2
371 3
372 4
373 3
374 1
375 4
377 5
378 4
379 4
380 3
381 3
382 3
383 3
384 6
385 2
386 4
387 4
388 5
389 2
390 3
391 2
392 4
393 3
394 4
395 4
396 5
397 3
398 2
399 3
400 6
401 4
402 4
403 6
404 1
405 1
406 4
407 1
408 2
409 2
410 4
411 1
412 1
413 1
414 1
415 1
416 1
417 1
418 2
419 1
420 1
421 2
422 2
423 3
424 2
425 3
426 5
427 3
428 1
429 2
430 3
431 2
432 1
433 2
434 2
435 1
436 4
437 4
438 5
439 2
440 1
441 3
442 2
443 3
445 2
446 2
447 1
448 4
449 2
450 1
451 3
452 1
453 1
454 2
455 3
457 2
458 2
459 2
460 1
461 2
462 3
463 1
464 2
465 2
466 2
467 2
469 2
470 1
472 2
473 2
474 2
475 2
476 2
477 1
478 1
479 3
480 2
481 1
482 2
483 4
485 5
487 1
490 3
491 3
492 2
494 1
495 1
496 2
497 1
499 1
500 1
501 1
502 1
505 2
506 3
508 1
509 2
512 1
513 2
515 1
516 1
517 1
519 1
520 1
523 1
525 1
527 2
528 2
529 5
531 1
532 2
533 2
534 1
536 1
538 2
540 1
541 2
542 2
547 2
550 1
553 3
555 1
556 1
557 1
559 2
563 1
565 1
566 3
567 3
568 1
572 2
575 2
578 1
579 1
581 2
582 2
584 3
587 1
589 1
590 2
591 1
592 1
593 1
595 2
596 1
597 1
600 2
601 1
602 3
603 1
604 1
605 1
606 1
607 1
608 1
610 1
611 2
612 1
619 1
622 1
626 1
627 2
628 3
630 2
632 1
636 2
637 1
645 1
646 1
653 2
656 1
659 1
662 1
667 1
670 1
671 1
673 1
676 1
677 1
680 2
684 1
685 1
688 2
693 1
694 3
695 1
697 2
699 1
700 1
702 1
704 1
711 2
712 1
720 1
725 1
731 1
738 1
741 1
744 1
745 1
746 1
754 1
760 1
763 1
766 1
767 1
770 1
774 1
782 1
786 1
787 1
789 1
793 1
794 1
803 2
815 1
819 1
821 1
826 1
827 1
832 2
833 1
838 1
843 1
850 1
863 1
870 1
879 1
882 1
886 1
889 1
890 2
892 1
896 1
899 1
903 1
907 1
909 1
911 2
915 1
930 2
932 1
935 1
944 1
946 1
950 1
955 1
957 1
978 1
987 1
989 1
1008 1
1009 1
1026 1
1039 2
1056 1
1059 1
1073 1
1093 1
1096 1
1100 1
1103 1
1111 1
1114 1
1128 1
1141 1
1143 1
1153 1
1170 1
1171 1
1177 1
1192 1
1198 1
1203 1
1206 1
1207 1
1223 1
1242 1
1247 1
1259 1
1261 1
1269 1
1307 1
1332 1
1352 1
1403 1
1406 1
1411 1
1433 1
1442 1
1446 2
1456 1
1461 1
1474 1
1480 1
1483 1
1486 1
1556 1
1560 1
1614 1
1638 1
1655 1
1674 1
1700 1
1736 1
1817 1
1818 1
1840 1
1854 1
1860 1
1862 1
1863 1
1870 1
1875 1
1881 1
1882 1
1883 1
1899 1
1927 1
1937 1
1950 2
1976 1
1978 1
2033 1
2043 1
2046 1
2048 1
2054 1
2059 1
2096 1
2138 1
2141 1
2143 1
2215 1
2231 1
2244 1
2262 1
2272 1
2274 1
2279 2
2298 1
2368 1
2401 1
2452 1
2712 1
2718 1
2857 1
2898 1
2904 1
3080 1
3089 1
3120 1
3212 1
3351 1
3463 1
3658 1
5201 1
9368 1
9524 1
9996 1
10064 1
30262 1
964017 1
[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
___._._.......__....._...........__..._..._._..._..__................_._
_..._._....._.._.__.....__..__._.__.._..._._._...__...._._.__.........
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]