File Info
- Filename
- BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2.starfusion.starfusion.fusion_predictions.filtered.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/starfusion/BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2.starfusion.starfusion.fusion_predictions.filtered.tsv
- Size
- 30.9 KB
- Workflow Run
- dev_rna_exp0011-2cae617
- Published
- May 16, 2026 1:46 AM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | SpliceType | LeftGene | LeftBreakpoint | RightGene | RightBreakpoint | JunctionReads | SpanningFrags | LargeAnchorSupport | FFPM | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | annots | breakpoint_ID | blacklisted | blacklist_reasons | aih_curated_reason | CALL | filter_reason | FILTER | total_reads |
| PTGDS--IGL@-ext | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | PTGDS^ENSG00000107317.13 | chr9:136981697:+ | IGL@-ext^IGL.g@-ext | chr22:22297504:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1193:19089:16722,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1405:13434:23097 | . | NO_LDAS | 0.2217 | AC | 1.6895 | AC | 1.6729 | ["INTERCHROMOSOMAL[chr9--chr22]"] | chr9:136981697-chr22:22297504 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | ||
| PITPNM2--IGL@-ext | 2 | 0 | 0.67 | 0.0 | INCL_NON_REF_SPLICE | PITPNM2^ENSG00000090975.13 | chr12:122995590:- | IGL@-ext^IGL.g@-ext | chr22:22327598:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2280:6218:9169,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2387:29614:15138 | . | NO_LDAS | 0.0743 | TG | 1.2419 | TC | 1.8295 | ["INTERCHROMOSOMAL[chr12--chr22]"] | chr12:122995590-chr22:22327598 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | ||
| KDM7A-DT--IGL@-ext | 2 | 0 | 0.67 | 0.0 | INCL_NON_REF_SPLICE | KDM7A-DT^ENSG00000260231.2 | chr7:140177302:+ | IGL@-ext^IGL.g@-ext | chr22:22327598:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2280:6218:9169,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2387:29614:15138 | . | NO_LDAS | 0.0743 | GC | 1.2419 | TC | 1.8295 | ["INTERCHROMOSOMAL[chr7--chr22]"] | chr7:140177302-chr22:22327598 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | ||
| HLA-C--MUC16 | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | HLA-C^ENSG00000204525.17 | chr6:31269489:- | MUC16^ENSG00000181143.15 | chr19:8848985:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1243:41976:28674,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1312:8912:12798 | . | NO_LDAS | 0.2217 | GT | 1.9656 | AG | 1.8062 | ["GTEx_recurrent_StarF2019","INTERCHROMOSOMAL[chr6--chr19]"] | chr6:31269489-chr19:8848985 | True | aih_curated_blacklist score(3) | 0 | aih_curated_blacklist score(3) | FAIL | 2 | |
| EPHA2--ZNF598 | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | EPHA2^ENSG00000142627.13 | chr1:16138379:- | ZNF598^ENSG00000167962.14 | chr16:1999614:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1159:32608:12840,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1405:20392:7235 | . | NO_LDAS | 0.2217 | GT | 1.9086 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr1--chr16]"] | chr1:16138379-chr16:1999614 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | ||
| DDX42--IGL@-ext | 2 | 0 | 0.67 | 0.0 | INCL_NON_REF_SPLICE | DDX42^ENSG00000198231.13 | chr17:63774231:+ | IGL@-ext^IGL.g@-ext | chr22:22327599:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2280:6218:9169,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2387:29614:15138 | . | NO_LDAS | 0.0743 | GG | 1.1589 | CC | 1.8295 | ["INTERCHROMOSOMAL[chr17--chr22]"] | chr17:63774231-chr22:22327599 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | ||
| COL4A1--COL4A2 | 2 | 0 | 2.0 | 0.0 | ONLY_REF_SPLICE | COL4A1^ENSG00000187498.16 | chr13:110306944:- | COL4A2^ENSG00000134871.19 | chr13:110357472:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1173:41790:8314,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2114:36839:10332 | . | YES_LDAS | 0.2217 | GT | 1.6895 | AG | 1.5656 | ["DGD_PARALOGS","HGNC_GENEFAM","INTRACHROMOSOMAL[chr13:0.00Mb]","NEIGHBORS_OVERLAP:-:+:[1345]"] | chr13:110306944-chr13:110357472 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 2 | |
| ARRB1--PTGES3 | 2 | 0 | 0.67 | 0.0 | INCL_NON_REF_SPLICE | ARRB1^ENSG00000137486.17 | chr11:75265261:- | PTGES3^ENSG00000110958.16 | chr12:56688119:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1276:38352:24975,&BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1408:43642:21052 | . | NO_LDAS | 0.0743 | GT | 1.1589 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr11--chr12]"] | chr11:75265261-chr12:56688119 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | ||
| XIST--TPRX1P1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | XIST^ENSG00000229807.12 | chrX:73849837:- | TPRX1P1^ENSG00000259021.2 | chr10:79499926:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2319:42405:13079 | . | NO_LDAS | 0.1108 | GT | 1.5546 | AG | 1.8892 | ["INTERCHROMOSOMAL[chrX--chr10]"] | chrX:73849837-chr10:79499926 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| VIM--GDAP1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | VIM^ENSG00000026025.16 | chr10:17233881:+ | GDAP1^ENSG00000104381.14 | chr8:74363840:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1119:16824:9015 | . | NO_LDAS | 0.1108 | GT | 1.8295 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr10--chr8]"] | chr10:17233881-chr8:74363840 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| VARS1--MT-RNR1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | VARS1^ENSG00000204394.13 | chr6:31784295:- | MT-RNR1^ENSG00000211459.2 | chrM:1419:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1309:37284:3396 | . | NO_LDAS | 0.1108 | GT | 1.6895 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr6--chrM]"] | chr6:31784295-chrM:1419 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| USP36--MT-RNR1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | USP36^ENSG00000055483.19 | chr17:78807439:- | MT-RNR1^ENSG00000211459.2 | chrM:1419:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2438:45446:16414 | . | NO_LDAS | 0.1108 | GT | 1.7819 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr17--chrM]"] | chr17:78807439-chrM:1419 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| UIMC1--IMMP2L | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | UIMC1^ENSG00000087206.17 | chr5:177001998:- | IMMP2L^ENSG00000184903.10 | chr7:111521449:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1329:35399:2962 | . | NO_LDAS | 0.1108 | GT | 1.9329 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr5--chr7]"] | chr5:177001998-chr7:111521449 | False | 0 | Read count too low: 1 < 8 | FAIL | 1 | ||
| TTC9--AL137028.1 | 1 | 0 | 0.12 | 0.0 | INCL_NON_REF_SPLICE | TTC9^ENSG00000133985.3 | chr14:70642089:+ | AL137028.1^ENSG00000274727.1 | chr20:64327852:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1209:37583:6745 | . | NO_LDAS | 0.0133 | GC | 0.9183 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr14--chr20]"] | chr14:70642089-chr20:64327852 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| TRIO--AMPD3 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | TRIO^ENSG00000038382.20 | chr5:14358222:+ | AMPD3^ENSG00000133805.15 | chr11:10461694:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1116:33053:1729 | . | NO_LDAS | 0.0366 | GT | 1.8892 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr5--chr11]"] | chr5:14358222-chr11:10461694 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| TRIO--AIPL1 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | TRIO^ENSG00000038382.20 | chr5:14358222:+ | AIPL1^ENSG00000129221.16 | chr17:6428365:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1116:33053:1729 | . | NO_LDAS | 0.0366 | GT | 1.8892 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr5--chr17]"] | chr5:14358222-chr17:6428365 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| TPM1--UBE3A | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TPM1^ENSG00000140416.23 | chr15:63060939:+ | UBE3A^ENSG00000114062.22 | chr15:25337730:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1144:46765:2555 | . | NO_LDAS | 0.1108 | GT | 1.9656 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr15:37.60Mb]"] | chr15:63060939-chr15:25337730 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| TNS1--MAGI1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TNS1^ENSG00000079308.19 | chr2:217848214:- | MAGI1^ENSG00000151276.23 | chr3:65379502:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2216:45576:2373 | . | NO_LDAS | 0.1108 | GC | 1.7968 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr2--chr3]"] | chr2:217848214-chr3:65379502 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| TNN--DSP | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | TNN^ENSG00000120332.16 | chr1:175077775:+ | DSP^ENSG00000096696.14 | chr6:7580832:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1458:50721:17478 | . | NO_LDAS | 0.0366 | GT | 1.6895 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr1--chr6]"] | chr1:175077775-chr6:7580832 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| TGM2--ORMDL1 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | TGM2^ENSG00000198959.12 | chr20:38142064:- | ORMDL1^ENSG00000128699.14 | chr2:189770696:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1222:41134:23069 | . | NO_LDAS | 0.0554 | GT | 1.8892 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr20--chr2]"] | chr20:38142064-chr2:189770696 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| TGM2--ELMO3 | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | TGM2^ENSG00000198959.12 | chr20:38142064:- | ELMO3^ENSG00000102890.16 | chr16:67201977:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1222:41134:23069 | . | NO_LDAS | 0.0554 | GT | 1.8892 | AG | 1.4295 | ["INTERCHROMOSOMAL[chr20--chr16]"] | chr20:38142064-chr16:67201977 | False | 0 | Read count too low: 1 < 8 | FAIL | 1 | ||
| TEX261--KMT5A | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | TEX261^ENSG00000144043.12 | chr2:70994825:- | KMT5A^ENSG00000183955.13 | chr12:123389465:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2183:37033:8006 | . | NO_LDAS | 0.0554 | GT | 1.3383 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr2--chr12]"] | chr2:70994825-chr12:123389465 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| SHROOM1--ABL2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SHROOM1^ENSG00000164403.15 | chr5:132825435:- | ABL2^ENSG00000143322.21 | chr1:179229668:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1216:1566:19076 | . | NO_LDAS | 0.1108 | GT | 1.2419 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr5--chr1]"] | chr5:132825435-chr1:179229668 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| RPS23--AC004585.1 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | RPS23^ENSG00000186468.13 | chr5:82276160:- | AC004585.1^ENSG00000266088.6 | chr17:40526927:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1182:18070:24232 | . | NO_LDAS | 0.0554 | GT | 1.9219 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr5--chr17]"] | chr5:82276160-chr17:40526927 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| RPL22P2--RPL22P4 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | RPL22P2^ENSG00000241081.1 | chr14:76886574:- | RPL22P4^ENSG00000225483.1 | chr1:206161095:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2478:38400:8553 | . | NO_LDAS | 0.0366 | GT | 1.8295 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr14--chr1]"] | chr14:76886574-chr1:206161095 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| RBM39--PRSS23 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RBM39^ENSG00000131051.24 | chr20:35729312:- | PRSS23^ENSG00000150687.12 | chr11:86937052:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1120:6606:12224 | . | NO_LDAS | 0.1108 | GT | 1.9329 | AG | 1.3753 | ["INTERCHROMOSOMAL[chr20--chr11]"] | chr20:35729312-chr11:86937052 | True | aih_curated_blacklist score(3) | 0 | aih_curated_blacklist score(3) | FAIL | 1 | |
| QKI--TLK2 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | QKI^ENSG00000112531.17 | chr6:163415167:+ | TLK2^ENSG00000146872.18 | chr17:62479270:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2268:39492:10220 | . | NO_LDAS | 0.0366 | GC | 0.9183 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr6--chr17]"] | chr6:163415167-chr17:62479270 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| PPP1R13B--MRTFB | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PPP1R13B^ENSG00000088808.18 | chr14:103847516:- | MRTFB^ENSG00000186260.17 | chr16:14071343:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1128:48181:16862 | . | NO_LDAS | 0.1108 | GT | 0.9183 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr14--chr16]"] | chr14:103847516-chr16:14071343 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| PLXNA3--TMEM179 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | PLXNA3^ENSG00000130827.6 | chrX:154465986:+ | TMEM179^ENSG00000258986.7 | chr14:104594724:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1114:15513:5792 | . | NO_LDAS | 0.0554 | GT | 1.8892 | AG | 1.7056 | ["INTERCHROMOSOMAL[chrX--chr14]"] | chrX:154465986-chr14:104594724 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| PLEKHA7--TSC1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PLEKHA7^ENSG00000166689.16 | chr11:17014125:- | TSC1^ENSG00000165699.15 | chr9:132905911:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1220:2044:24639 | . | NO_LDAS | 0.1108 | GT | 1.9656 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr11--chr9]"] | chr11:17014125-chr9:132905911 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| PLEC--SOX13 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PLEC^ENSG00000178209.16 | chr8:143922177:- | SOX13^ENSG00000143842.15 | chr1:204116641:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1270:44694:5946 | . | NO_LDAS | 0.1108 | GT | 1.7465 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr8--chr1]"] | chr8:143922177-chr1:204116641 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| OTULINL--ARRDC1-AS1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | OTULINL^ENSG00000145569.6 | chr5:14581828:+ | ARRDC1-AS1^ENSG00000203993.6 | chr9:137615740:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2214:26144:18936 | . | NO_LDAS | 0.1108 | GT | 0.9968 | AG | 1.4256 | ["INTERCHROMOSOMAL[chr5--chr9]"] | chr5:14581828-chr9:137615740 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| NUMBL--RTKN | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NUMBL^ENSG00000105245.9 | chr19:40667942:- | RTKN^ENSG00000114993.17 | chr2:74426424:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1108:25108:18319 | . | NO_LDAS | 0.1108 | GT | 1.7968 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr19--chr2]"] | chr19:40667942-chr2:74426424 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| NRP2--DONSON | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NRP2^ENSG00000118257.17 | chr2:205776983:+ | DONSON^ENSG00000159147.18 | chr21:33577704:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1154:11695:23139 | . | NO_LDAS | 0.1108 | GT | 1.2867 | AG | 0.971 | ["INTERCHROMOSOMAL[chr2--chr21]"] | chr2:205776983-chr21:33577704 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| NOS1--ETS1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NOS1^ENSG00000089250.19 | chr12:117265423:- | ETS1^ENSG00000134954.14 | chr11:128480451:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2466:42882:15419 | . | NO_LDAS | 0.1108 | GC | 1.3383 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr12--chr11]"] | chr12:117265423-chr11:128480451 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| NKX6-1--C6orf223 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NKX6-1^ENSG00000163623.10 | chr4:84498077:- | C6orf223^ENSG00000181577.16 | chr6:44002762:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1140:10902:8763 | . | NO_LDAS | 0.1108 | GT | 0.7219 | AG | 1.231 | ["INTERCHROMOSOMAL[chr4--chr6]"] | chr4:84498077-chr6:44002762 | True | aih_curated_blacklist score(3) | 0 | aih_curated_blacklist score(3) | FAIL | 1 | |
| MICALL2--EZR | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MICALL2^ENSG00000164877.19 | chr7:1434887:- | EZR^ENSG00000092820.18 | chr6:158769418:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1324:26807:29361 | . | NO_LDAS | 0.1108 | GT | 1.7465 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr7--chr6]"] | chr7:1434887-chr6:158769418 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| METRNL--CCNI2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | METRNL^ENSG00000176845.13 | chr17:83079985:+ | CCNI2^ENSG00000205089.8 | chr5:132751116:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1427:3031:16988 | . | NO_LDAS | 0.1108 | GT | 1.6402 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr17--chr5]"] | chr17:83079985-chr5:132751116 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| LRRC7--IGL-@-ext | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | LRRC7^ENSG00000033122.21 | chr1:69568297:+ | IGL-@-ext^IGL-.g@-ext | chr22:22921358:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1481:31758:8258 | . | NO_LDAS | 0.1108 | CT | 0.9183 | AC | 1.6049 | ["INTERCHROMOSOMAL[chr1--chr22]"] | chr1:69568297-chr22:22921358 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| LINC01750--ARX | 1 | 0 | 0.25 | 0.0 | INCL_NON_REF_SPLICE | LINC01750^ENSG00000231437.3 | chr1:111990158:+ | ARX^ENSG00000004848.8 | chrX:25013700:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1393:22738:23658 | . | NO_LDAS | 0.0277 | GT | 1.3996 | AG | 1.4716 | ["INTERCHROMOSOMAL[chr1--chrX]"] | chr1:111990158-chrX:25013700 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| LINC01471--IGH-@-ext | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | LINC01471^ENSG00000239921.6 | chr3:127536919:- | IGH-@-ext^IGH-.g@-ext | chr14:105708372:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2345:31815:14942 | . | NO_LDAS | 0.0554 | CT | 1.7232 | AC | 1.9656 | ["INTERCHROMOSOMAL[chr3--chr14]"] | chr3:127536919-chr14:105708372 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| LINC01471--IGH-@-ext | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | LINC01471^ENSG00000239921.6 | chr3:127536919:- | IGH-@-ext^IGH-.g@-ext | chr14:105588102:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2345:31815:14942 | . | NO_LDAS | 0.0554 | CT | 1.7232 | AC | 1.9656 | ["INTERCHROMOSOMAL[chr3--chr14]"] | chr3:127536919-chr14:105588102 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| LEPROTL1--SMG1P1 | 1 | 0 | 0.33 | 0.0 | ONLY_REF_SPLICE | LEPROTL1^ENSG00000104660.19 | chr8:30104991:+ | SMG1P1^ENSG00000237296.9 | chr16:22451620:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1223:26257:22383 | . | NO_LDAS | 0.0366 | GC | 1.8892 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr8--chr16]"] | chr8:30104991-chr16:22451620 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 | |
| KHSRP--IGL@-ext | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | KHSRP^ENSG00000088247.18 | chr19:6413826:- | IGL@-ext^IGL.g@-ext | chr22:22874153:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2248:32389:1504 | . | NO_LDAS | 0.1108 | CT | 0.0 | AA | 1.3383 | ["INTERCHROMOSOMAL[chr19--chr22]"] | chr19:6413826-chr22:22874153 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 | |
| JUND--CCDC13 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | JUND^ENSG00000130522.6 | chr19:18280504:- | CCDC13^ENSG00000244607.7 | chr3:42739711:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1438:3945:15068 | . | NO_LDAS | 0.1108 | GT | 1.7465 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr19--chr3]"] | chr19:18280504-chr3:42739711 | True | aih_curated_blacklist score(3) | 0 | aih_curated_blacklist score(3) | FAIL | 1 | |
| IGL@-ext--LRRC4B | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | IGL@-ext^IGL.g@-ext | chr22:22118121:+ | LRRC4B^ENSG00000131409.13 | chr19:50568104:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1286:48003:19804 | . | NO_LDAS | 0.1108 | CC | 1.371 | CG | 1.053 | ["INTERCHROMOSOMAL[chr22--chr19]"] | chr22:22118121-chr19:50568104 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| IGH-@-ext--TNS1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105978613:+ | TNS1^ENSG00000079308.19 | chr2:217818002:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1174:27244:13331 | . | NO_LDAS | 0.1108 | CT | 1.7232 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr14--chr2]"] | chr14:105978613-chr2:217818002 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| IGH-@-ext--KAZN | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105588395:+ | KAZN^ENSG00000189337.17 | chr1:15114555:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1204:48367:26460 | . | NO_LDAS | 0.0366 | TG | 1.6729 | AT | 1.8892 | ["INTERCHROMOSOMAL[chr14--chr1]"] | chr14:105588395-chr1:15114555 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 | |
| IGH-@-ext--FP671120.7 | 1 | 0 | 0.25 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105854545:+ | FP671120.7^ENSG00000281383.1 | chr21:8254830:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1291:36264:20603 | . | YES_LDAS | 0.0277 | GG | 1.7056 | GC | 1.5656 | ["INTERCHROMOSOMAL[chr14--chr21]"] | chr14:105854545-chr21:8254830 | False | 0 | Read count too low: 1 < 8 | FAIL | 1 | ||
| IGH-@-ext--FP671120.6 | 1 | 0 | 0.25 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105854545:+ | FP671120.6^ENSG00000280800.1 | chr21:8210622:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1291:36264:20603 | . | YES_LDAS | 0.0277 | GG | 1.7056 | GC | 1.5656 | ["INTERCHROMOSOMAL[chr14--chr21]"] | chr14:105854545-chr21:8210622 | False | 0 | Read count too low: 1 < 8 | FAIL | 1 | ||
| IGH-@-ext--FP236383.5 | 1 | 0 | 0.25 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105854545:+ | FP236383.5^ENSG00000281181.1 | chr21:8437867:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1291:36264:20603 | . | YES_LDAS | 0.0277 | GG | 1.7056 | GC | 1.5656 | ["INTERCHROMOSOMAL[chr14--chr21]"] | chr14:105854545-chr21:8437867 | False | 0 | Read count too low: 1 < 8 | FAIL | 1 | ||
| IGH-@-ext--FP236383.4 | 1 | 0 | 0.25 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105854545:+ | FP236383.4^ENSG00000280614.1 | chr21:8393657:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1291:36264:20603 | . | YES_LDAS | 0.0277 | GG | 1.7056 | GC | 1.5656 | ["INTERCHROMOSOMAL[chr14--chr21]"] | chr14:105854545-chr21:8393657 | False | 0 | Read count too low: 1 < 8 | FAIL | 1 | ||
| IGH-@-ext--ACADM | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105643857:+ | ACADM^ENSG00000117054.15 | chr1:75742775:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1197:18952:5582 | . | NO_LDAS | 0.1108 | CA | 1.7232 | CA | 1.9329 | ["INTERCHROMOSOMAL[chr14--chr1]"] | chr14:105643857-chr1:75742775 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| HLA-C--NUMA1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | HLA-C^ENSG00000204525.17 | chr6:31269493:- | NUMA1^ENSG00000137497.18 | chr11:72013673:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1151:37227:25297 | . | NO_LDAS | 0.1108 | GT | 1.8256 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr6--chr11]"] | chr6:31269493-chr11:72013673 | True | pair|recurrent breakpoints | aih_curated_blacklist score(3) | 0 | Blacklisted; aih_curated_blacklist score(3) | FAIL | 1 |
| GPR61--P2RX2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GPR61^ENSG00000156097.12 | chr1:109545530:+ | P2RX2^ENSG00000187848.15 | chr12:132621567:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1423:7262:26082 | . | NO_LDAS | 0.1108 | GT | 1.3996 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr1--chr12]"] | chr1:109545530-chr12:132621567 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| GID4--C7orf26 | 1 | 0 | 0.14 | 0.0 | INCL_NON_REF_SPLICE | GID4^ENSG00000141034.10 | chr17:18039668:+ | C7orf26^ENSG00000146576.13 | chr7:6590142:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:2413:23676:17913 | . | NO_LDAS | 0.0155 | GT | 0.971 | AG | 1.3996 | ["INTERCHROMOSOMAL[chr17--chr7]"] | chr17:18039668-chr7:6590142 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| FUS--RNF115 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FUS^ENSG00000089280.19 | chr16:31185103:+ | RNF115^ENSG00000265491.5 | chr1:145823967:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2324:29566:2695 | . | NO_LDAS | 0.1108 | GT | 1.1589 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr16--chr1]"] | chr16:31185103-chr1:145823967 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| FOS--FLNA | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FOS^ENSG00000170345.10 | chr14:75279978:+ | FLNA^ENSG00000196924.19 | chrX:154359026:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1181:41143:18571 | . | NO_LDAS | 0.1108 | GT | 1.6402 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr14--chrX]"] | chr14:75279978-chrX:154359026 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| FAF1--PIM1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FAF1^ENSG00000185104.20 | chr1:50959894:- | PIM1^ENSG00000137193.14 | chr6:37170218:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2419:28878:24513 | . | NO_LDAS | 0.1108 | GT | 0.9183 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr1--chr6]"] | chr1:50959894-chr6:37170218 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| EGR3--TTLL11 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | EGR3^ENSG00000179388.9 | chr8:22693363:- | TTLL11^ENSG00000175764.15 | chr9:122093198:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1479:23409:26923 | . | NO_LDAS | 0.0554 | GT | 1.1589 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr8--chr9]"] | chr8:22693363-chr9:122093198 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| EGR3--MAPRE2 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | EGR3^ENSG00000179388.9 | chr8:22693363:- | MAPRE2^ENSG00000166974.13 | chr18:34976949:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1479:23409:26923 | . | NO_LDAS | 0.0554 | GT | 1.1589 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr8--chr18]"] | chr8:22693363-chr18:34976949 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| DDX5--HBE1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DDX5^ENSG00000108654.16 | chr17:64500315:- | HBE1^ENSG00000213931.7 | chr11:5269588:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1225:47170:6114 | . | NO_LDAS | 0.1108 | GT | 1.8892 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr17--chr11]"] | chr17:64500315-chr11:5269588 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| DAB2IP--SGSM3 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | DAB2IP^ENSG00000136848.17 | chr9:121760205:+ | SGSM3^ENSG00000100359.21 | chr22:40409292:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2172:2440:15937 | . | NO_LDAS | 0.0554 | GT | 1.8892 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr9--chr22]"] | chr9:121760205-chr22:40409292 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| CTSA--RASGEF1B | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CTSA^ENSG00000064601.20 | chr20:45898109:+ | RASGEF1B^ENSG00000138670.18 | chr4:82044021:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1194:10271:21318 | . | NO_LDAS | 0.1108 | GT | 1.9329 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr20--chr4]"] | chr20:45898109-chr4:82044021 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| CREBBP--IGH-@-ext | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CREBBP^ENSG00000005339.15 | chr16:3728962:- | IGH-@-ext^IGH-.g@-ext | chr14:106844818:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1393:23968:14550 | . | NO_LDAS | 0.1108 | AG | 1.4256 | GG | 1.5546 | ["INTERCHROMOSOMAL[chr16--chr14]"] | chr16:3728962-chr14:106844818 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| COL4A1--MYCBP2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | COL4A1^ENSG00000187498.16 | chr13:110306944:- | MYCBP2^ENSG00000005810.18 | chr13:77243951:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1186:20699:19875 | . | YES_LDAS | 0.1108 | GT | 1.6895 | AG | 1.5628 | ["INTRACHROMOSOMAL[chr13:32.82Mb]"] | chr13:110306944-chr13:77243951 | False | 0 | Read count too low: 1 < 8 | FAIL | 1 | ||
| COL1A1--DDR2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | COL1A1^ENSG00000108821.14 | chr17:50197732:- | DDR2^ENSG00000162733.19 | chr1:162781781:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:7:1407:32227:18515 | . | NO_LDAS | 0.1108 | GT | 1.5058 | AG | 1.7056 | ["INTERCHROMOSOMAL[chr17--chr1]"] | chr17:50197732-chr1:162781781 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| COL16A1--MEG3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | COL16A1^ENSG00000084636.18 | chr1:31692767:- | MEG3^ENSG00000214548.18 | chr14:100849316:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1130:26443:7600 | . | NO_LDAS | 0.1108 | GT | 1.9219 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr1--chr14]"] | chr1:31692767-chr14:100849316 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| CEP89--LINC01451 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CEP89^ENSG00000121289.18 | chr19:32877385:- | LINC01451^ENSG00000279141.3 | chr9:136615443:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2449:1720:22537 | . | NO_LDAS | 0.1108 | GT | 1.8295 | AG | 1.371 | ["INTERCHROMOSOMAL[chr19--chr9]"] | chr19:32877385-chr9:136615443 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| CDH24--C1orf198 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CDH24^ENSG00000139880.19 | chr14:23048275:- | C1orf198^ENSG00000119280.17 | chr1:230868733:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2250:37583:13639 | . | NO_LDAS | 0.1108 | GT | 1.7056 | AG | 0.6998 | ["INTERCHROMOSOMAL[chr14--chr1]"] | chr14:23048275-chr1:230868733 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| CAPNS1--TRHDE-AS1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CAPNS1^ENSG00000126247.11 | chr19:36141174:+ | TRHDE-AS1^ENSG00000236333.4 | chr12:72271670:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:2343:20303:21094 | . | NO_LDAS | 0.1108 | GT | 1.3753 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr19--chr12]"] | chr19:36141174-chr12:72271670 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| ATP2B4--FTH1P2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ATP2B4^ENSG00000058668.15 | chr1:203714221:+ | FTH1P2^ENSG00000234975.6 | chr1:228687790:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:8:1416:40334:26278 | . | NO_LDAS | 0.1108 | GT | 1.8256 | AG | 1.7819 | ["INTRACHROMOSOMAL[chr1:24.94Mb]"] | chr1:203714221-chr1:228687790 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| ATF6B--CC2D1A | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | ATF6B^ENSG00000213676.13 | chr6:32115616:- | CC2D1A^ENSG00000132024.18 | chr19:13918965:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2330:23717:4391 | . | NO_LDAS | 0.0366 | GT | 1.5546 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr6--chr19]"] | chr6:32115616-chr19:13918965 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| ARFGEF2--IGL@-ext | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ARFGEF2^ENSG00000124198.10 | chr20:48995881:+ | IGL@-ext^IGL.g@-ext | chr22:22171577:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1162:18474:20813 | . | NO_LDAS | 0.1108 | GG | 1.9086 | GC | 1.7465 | ["INTERCHROMOSOMAL[chr20--chr22]"] | chr20:48995881-chr22:22171577 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| APLP2--ANP32E | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | APLP2^ENSG00000084234.18 | chr11:130121799:+ | ANP32E^ENSG00000143401.15 | chr1:150226772:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1447:24137:9519 | . | NO_LDAS | 0.1108 | GT | 1.7819 | AG | 1.231 | ["INTERCHROMOSOMAL[chr11--chr1]"] | chr11:130121799-chr1:150226772 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| AHNAK--MT-RNR1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AHNAK^ENSG00000124942.14 | chr11:62527786:- | MT-RNR1^ENSG00000211459.2 | chrM:1419:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2431:46668:25283 | . | NO_LDAS | 0.1108 | GT | 1.9656 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr11--chrM]"] | chr11:62527786-chrM:1419 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| AC025884.2--IGH-@-ext | 1 | 0 | 0.25 | 0.0 | INCL_NON_REF_SPLICE | AC025884.2^ENSG00000259098.1 | chr15:22258412:+ | IGH-@-ext^IGH-.g@-ext | chr14:105769657:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2276:28368:20799 | . | NO_LDAS | 0.0277 | GT | 1.8256 | AC | 1.6895 | ["INTERCHROMOSOMAL[chr15--chr14]"] | chr15:22258412-chr14:105769657 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| AC025884.2--IGH-@-ext | 1 | 0 | 0.25 | 0.0 | INCL_NON_REF_SPLICE | AC025884.2^ENSG00000259098.1 | chr15:22258412:+ | IGH-@-ext^IGH-.g@-ext | chr14:105741893:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:2276:28368:20799 | . | NO_LDAS | 0.0277 | GT | 1.8256 | AC | 1.8323 | ["INTERCHROMOSOMAL[chr15--chr14]"] | chr15:22258412-chr14:105741893 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| AC011270.2--ARX | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | AC011270.2^ENSG00000279694.1 | chr15:78340406:- | ARX^ENSG00000004848.8 | chrX:25013690:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:2112:12245:2625 | . | NO_LDAS | 0.0366 | GT | 1.4716 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr15--chrX]"] | chr15:78340406-chrX:25013690 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| AC009230.1--INO80 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | AC009230.1^ENSG00000286335.1 | chr2:149184371:- | INO80^ENSG00000128908.17 | chr15:41085541:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1485:21727:3971 | . | NO_LDAS | 0.0554 | GT | 1.7232 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr2--chr15]"] | chr2:149184371-chr15:41085541 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| AC006252.1--TMED2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AC006252.1^ENSG00000243224.1 | chr3:52239355:+ | TMED2^ENSG00000086598.11 | chr12:123584562:+ | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:6:1463:46959:15951 | . | NO_LDAS | 0.1108 | GT | 1.7232 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr3--chr12]"] | chr3:52239355-chr12:123584562 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | ||
| ABCF1--NUMBL | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ABCF1^ENSG00000204574.14 | chr6:30577913:+ | NUMBL^ENSG00000105245.9 | chr19:40668013:- | &BreastNP_FFPE_L02_RNA_01_B23LG7FLT4_2@LH00166:238:23LG7FLT4:5:1120:38408:28884 | . | YES_LDAS | 0.1108 | GT | 1.5058 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr6--chr19]"] | chr6:30577913-chr19:40668013 | False | 0 | Read count too low: 1 < 8 | FAIL | 1 |
83 rows