File Info
- Filename
- BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/picard/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Size
- 5.1 KB
- Workflow Run
- dev_rna_exp0011-2cae617
- Published
- May 16, 2026 1:46 AM
Content
View in new tab## htsjdk.samtools.metrics.StringHeader # CollectInsertSizeMetrics --Histogram_FILE BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1_collectinsertsize.pdf --INPUT BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false ## htsjdk.samtools.metrics.StringHeader # Started on: Sat May 16 08:43:16 GMT 2026 ## METRICS CLASS picard.analysis.InsertSizeMetrics MEDIAN_INSERT_SIZE MODE_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_95_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP 99 88 31 7 472225 103.597161 58.730371 32460396 FR 13 23 35 49 63 83 111 301 2361 6699 43227 ## HISTOGRAM java.lang.Integer insert_size All_Reads.fr_count 7 1 8 5 9 2 10 3 11 3 12 19 13 25 14 1685 15 7417 16 12686 17 12942 18 12162 19 14219 20 15580 21 19013 22 19183 23 12290 24 12324 25 15181 26 19233 27 24911 28 26918 29 32715 30 32549 31 35439 32 42684 33 38893 34 40918 35 46311 36 48648 37 56052 38 63445 39 73823 40 81347 41 92983 42 99426 43 109261 44 115446 45 123601 46 129909 47 138988 48 144041 49 154059 50 161701 51 175149 52 177090 53 185464 54 195171 55 208818 56 209827 57 214959 58 223184 59 230425 60 240491 61 246758 62 256206 63 264412 64 271953 65 271403 66 286264 67 293049 68 294008 69 297952 70 309143 71 303447 72 313731 73 321900 74 326723 75 331868 76 340048 77 346551 78 343153 79 344409 80 337111 81 343117 82 343001 83 344599 84 347387 85 341010 86 344709 87 338317 88 348346 89 340978 90 335801 91 336634 92 329174 93 320636 94 315199 95 315837 96 307867 97 302714 98 296062 99 287830 100 287376 101 284440 102 273175 103 265590 104 250284 105 251416 106 245051 107 238970 108 228757 109 227810 110 213657 111 209514 112 200547 113 198689 114 188196 115 182839 116 179111 117 166769 118 171801 119 163107 120 153919 121 149149 122 140095 123 137102 124 126633 125 126572 126 126163 127 119453 128 116922 129 111799 130 105658 131 99422 132 99006 133 96101 134 92629 135 89681 136 83905 137 78818 138 75464 139 75942 140 73437 141 70893 142 65789 143 65133 144 61461 145 61671 146 59623 147 52373 148 53584 149 51325 150 50761 151 49709 152 48058 153 44838 154 45127 155 42920 156 41134 157 42222 158 41439 159 39741 160 40349 161 37852 162 35453 163 36351 164 33799 165 34164 166 31828 167 31784 168 31430 169 31883 170 31236 171 29129 172 29344 173 28496 174 25107 175 28823 176 26348 177 26760 178 27151 179 25112 180 26581 181 24584 182 24409 183 24862 184 26270 185 25746 186 22565 187 23464 188 22122 189 22685 190 23400 191 22980 192 20441 193 20194 194 19731 195 21014 196 20431 197 20050 198 19453 199 20451 200 18656 201 19444 202 21215 203 19495 204 20050 205 20088 206 20089 207 17946 208 18789 209 19579 210 16537 211 17058 212 15766 213 16512 214 16339 215 19140 216 15502 217 16457 218 15989 219 14518 220 15003 221 14553 222 13969 223 14250 224 12918 225 13994 226 13052 227 13782 228 13591 229 12737 230 13424 231 11143 232 14566 233 11829 234 12091 235 12485 236 11157 237 11906 238 10531 239 11113 240 11022 241 11715 242 11440 243 10229 244 9250 245 11551 246 9622 247 9844 248 9815 249 9398 250 9218 251 9669 252 10492 253 8343 254 8459 255 9001 256 8668 257 9199 258 7565 259 7867 260 9270 261 8731 262 8549 263 8568 264 8377 265 7579 266 8196 267 7075 268 8923 269 8029 270 8695 271 7371 272 9056 273 6206 274 6856 275 6465 276 6816 277 7637 278 6793 279 7766 280 7658 281 6854 282 7309 283 6242 284 7164 285 6319 286 6776 287 7445 288 6562 289 6906 290 5788 291 6754 292 6671 293 5908 294 7073 295 6570 296 6974 297 7178 298 6760 299 6553 300 6301 301 7079 302 6657 303 6923 304 7561 305 6197 306 6471 307 5433 308 6758 309 5747 310 7994 311 6292 312 6466 313 6910 314 7097 315 6842 316 6511 317 7313 318 8029 319 6968 320 6604 321 5879 322 6736 323 7332 324 7397 325 5843 326 5946 327 7479 328 6521 329 6586 330 6710 331 7355 332 6321 333 6098 334 6641 335 6973 336 6906 337 6478 338 5888 339 6757 340 6215 341 6661 342 6331 343 6689 344 5470 345 6873 346 6187 347 4741 348 6470 349 6853 350 6463 351 7136 352 6221 353 6529 354 6023 355 6355 356 6397 357 5464 358 5556 359 6193 360 6589 361 6130 362 5899 363 4940 364 6533 365 5800 366 5363 367 5478 368 5449 369 6020 370 6024 371 6150 372 5722 373 5047 374 5983 375 6020 376 5517 377 5891 378 6997 379 5101 380 5081 381 5453 382 5116 383 5137 384 6423 385 3828 386 6824 387 4370 388 4469 389 5176 390 4782 391 5370 392 5068 393 6161 394 4734 395 4694 396 4576 397 4987 398 3721 399 4805 400 4833 401 4603 402 5627 403 4195 404 5315 405 5077 406 4478 407 5464 408 4956 409 4973