File Info
- Filename
- HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/picard/HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Size
- 4.5 KB
- Workflow Run
- dev_rna_exp0011-2cae617
- Published
- May 16, 2026 1:54 AM
Content
View in new tab## htsjdk.samtools.metrics.StringHeader # CollectInsertSizeMetrics --Histogram_FILE HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1_collectinsertsize.pdf --INPUT HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT HeadNeckN_FFPE_L05_RNA_01_B23LG7FLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false ## htsjdk.samtools.metrics.StringHeader # Started on: Sat May 16 08:44:03 GMT 2026 ## METRICS CLASS picard.analysis.InsertSizeMetrics MEDIAN_INSERT_SIZE MODE_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_95_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP 91 79 26 5 453794 91.838243 44.190622 15938086 FR 11 19 29 41 53 67 87 153 2033 6023 37971 ## HISTOGRAM java.lang.Integer insert_size All_Reads.fr_count 5 1 11 1 12 19 13 20 14 1270 15 5800 16 8947 17 9667 18 9234 19 11021 20 12723 21 14997 22 15112 23 9292 24 9031 25 11240 26 13697 27 17539 28 18274 29 21959 30 20614 31 21167 32 25399 33 22957 34 23430 35 24981 36 26587 37 30105 38 34144 39 40404 40 46256 41 52166 42 57658 43 60965 44 64209 45 69087 46 73838 47 81121 48 84104 49 93626 50 97788 51 105436 52 108171 53 113541 54 114459 55 119841 56 125325 57 127475 58 136056 59 143668 60 146315 61 150585 62 156771 63 160198 64 160529 65 166420 66 170137 67 172262 68 174384 69 181155 70 184377 71 183458 72 183781 73 188874 74 191954 75 193407 76 191768 77 193537 78 190621 79 196414 80 189787 81 191909 82 195140 83 195859 84 193220 85 191288 86 187797 87 184480 88 183435 89 184254 90 177468 91 174785 92 173050 93 170940 94 164416 95 159122 96 156943 97 154591 98 153321 99 142787 100 142474 101 136568 102 132875 103 125361 104 124681 105 120167 106 112278 107 111551 108 108036 109 100769 110 95112 111 94546 112 92201 113 85240 114 81212 115 80158 116 77681 117 75039 118 73320 119 66432 120 64234 121 62047 122 60814 123 57265 124 51305 125 50514 126 48338 127 49465 128 46063 129 44653 130 41733 131 41533 132 39910 133 35729 134 33034 135 32177 136 31778 137 30916 138 31498 139 27955 140 26642 141 23224 142 24430 143 20677 144 21449 145 22338 146 20485 147 18057 148 19575 149 16106 150 17267 151 16197 152 16650 153 14586 154 14060 155 13727 156 12615 157 13615 158 12123 159 13011 160 12008 161 11003 162 10885 163 10946 164 10153 165 10865 166 9931 167 10536 168 10344 169 10684 170 9890 171 9065 172 9103 173 9440 174 7841 175 9116 176 8892 177 8394 178 8882 179 8677 180 8362 181 7911 182 8278 183 8226 184 7427 185 7005 186 7361 187 6636 188 6600 189 6889 190 6974 191 6593 192 7400 193 6789 194 6268 195 6352 196 5982 197 5904 198 6077 199 6446 200 6178 201 6077 202 5718 203 6233 204 6351 205 5810 206 5409 207 6025 208 5768 209 5872 210 4933 211 4729 212 5467 213 4520 214 4994 215 4400 216 4877 217 4821 218 3927 219 5261 220 4446 221 4703 222 4296 223 4474 224 3774 225 3818 226 4556 227 4132 228 3706 229 4032 230 3946 231 4353 232 3882 233 4014 234 3652 235 4139 236 4258 237 3814 238 3788 239 3532 240 3910 241 3179 242 3578 243 3036 244 3306 245 2887 246 3541 247 3252 248 2852 249 2771 250 3044 251 2989 252 3054 253 3342 254 3267 255 2678 256 2576 257 2967 258 2720 259 3005 260 2534 261 2710 262 3326 263 2901 264 3415 265 2753 266 2546 267 2252 268 2260 269 2169 270 3179 271 2259 272 3175 273 2692 274 2240 275 3062 276 2669 277 2647 278 2424 279 2804 280 2708 281 2735 282 2536 283 1868 284 2412 285 2708 286 2196 287 2542 288 2177 289 2317 290 2428 291 2001 292 2714 293 2013 294 2224 295 2162 296 2543 297 2401 298 2241 299 2364 300 2229 301 1895 302 2223 303 2367 304 2104 305 2047 306 2428 307 2111 308 2166 309 1893 310 2029 311 1936 312 1882 313 1948 314 2513 315 2245 316 2432 317 1987 318 2126 319 2202 320 2491 321 2295 322 2369 323 1679 324 1712 325 2265 326 2276 327 1945 328 2103 329 2180 330 1825 331 1694 332 2511 333 2042 334 2189 335 1709 336 1987 337 1814 338 2039 339 2059 340 1944 341 2254 342 1494 343 2350 344 1748 345 1537 346 2215 347 1829 348 2376 349 2217 350 2049 351 2009