File Info
- Filename
- BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/QC/picard/BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1_collectinsertsize.txt
- Size
- 5.0 KB
- Workflow Run
- dev_rna_exp0011-2cae617
- Published
- May 16, 2026 1:54 AM
Content
View in new tab## htsjdk.samtools.metrics.StringHeader # CollectInsertSizeMetrics --Histogram_FILE BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1_collectinsertsize.pdf --INPUT BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT BreastNP_FFPE_L03_RNA_01_B23LG7FLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false ## htsjdk.samtools.metrics.StringHeader # Started on: Sat May 16 08:43:15 GMT 2026 ## METRICS CLASS picard.analysis.InsertSizeMetrics MEDIAN_INSERT_SIZE MODE_INSERT_SIZE MEDIAN_ABSOLUTE_DEVIATION MIN_INSERT_SIZE MAX_INSERT_SIZE MEAN_INSERT_SIZE STANDARD_DEVIATION READ_PAIRS PAIR_ORIENTATION WIDTH_OF_10_PERCENT WIDTH_OF_20_PERCENT WIDTH_OF_30_PERCENT WIDTH_OF_40_PERCENT WIDTH_OF_50_PERCENT WIDTH_OF_60_PERCENT WIDTH_OF_70_PERCENT WIDTH_OF_80_PERCENT WIDTH_OF_90_PERCENT WIDTH_OF_95_PERCENT WIDTH_OF_99_PERCENT SAMPLE LIBRARY READ_GROUP 98 85 30 6 453673 99.38268 52.609165 32415122 FR 11 23 35 47 61 79 109 555 3301 8107 48417 ## HISTOGRAM java.lang.Integer insert_size All_Reads.fr_count 6 3 7 4 8 1 10 2 12 22 13 26 14 2018 15 8372 16 13181 17 13954 18 12679 19 14611 20 15631 21 18634 22 17615 23 11548 24 11695 25 14892 26 19449 27 23664 28 24407 29 29628 30 28620 31 29642 32 36881 33 33433 34 33614 35 36178 36 36549 37 41858 38 48211 39 54511 40 63755 41 75106 42 79978 43 89640 44 92187 45 102470 46 109365 47 118507 48 129950 49 139668 50 153545 51 163212 52 171057 53 180333 54 186451 55 193983 56 203446 57 211382 58 223535 59 239556 60 238280 61 254525 62 265004 63 269661 64 280545 65 288207 66 288335 67 295843 68 294529 69 311062 70 322778 71 325184 72 330313 73 342860 74 348533 75 347035 76 350982 77 355028 78 359289 79 350077 80 357479 81 363466 82 361680 83 368723 84 359636 85 368820 86 367139 87 364683 88 353484 89 358121 90 350335 91 341236 92 334117 93 323816 94 327082 95 323856 96 313622 97 312536 98 306945 99 302958 100 291826 101 284798 102 272010 103 267469 104 258872 105 253954 106 248164 107 241064 108 232949 109 227841 110 215874 111 205943 112 199185 113 192410 114 186403 115 176572 116 172169 117 170738 118 158628 119 155057 120 148953 121 144246 122 133970 123 128693 124 120110 125 117229 126 114797 127 109501 128 106342 129 100422 130 99203 131 92741 132 91085 133 85608 134 81990 135 78466 136 73133 137 68452 138 66785 139 63725 140 63992 141 60833 142 56208 143 54981 144 54351 145 50811 146 48336 147 46464 148 43131 149 43597 150 40953 151 39306 152 37196 153 38117 154 35543 155 34141 156 32529 157 31080 158 31008 159 30031 160 28552 161 29487 162 30072 163 26944 164 25116 165 24851 166 25135 167 23571 168 23422 169 22620 170 22720 171 23050 172 21401 173 21142 174 21373 175 20521 176 18457 177 19828 178 18803 179 18126 180 18529 181 17556 182 18793 183 16818 184 17455 185 17319 186 17237 187 15291 188 16547 189 16940 190 14325 191 15479 192 16328 193 14896 194 14430 195 15623 196 14942 197 14918 198 14414 199 16263 200 12778 201 13381 202 12507 203 12482 204 12708 205 13942 206 13753 207 13113 208 10795 209 11405 210 10666 211 11397 212 12105 213 10605 214 11455 215 11206 216 10038 217 10489 218 11048 219 10960 220 10293 221 11309 222 9536 223 11587 224 9465 225 9662 226 9070 227 8487 228 8724 229 9035 230 8958 231 9351 232 8069 233 8545 234 7605 235 8874 236 8250 237 7481 238 7758 239 8561 240 7832 241 7567 242 6976 243 7792 244 6495 245 6236 246 7177 247 6515 248 6373 249 6717 250 6610 251 7501 252 7501 253 6471 254 7312 255 6450 256 5957 257 6760 258 5838 259 7100 260 6356 261 6362 262 5882 263 5933 264 6000 265 6134 266 6147 267 6819 268 5526 269 6037 270 5626 271 6391 272 6594 273 6448 274 6409 275 5867 276 6412 277 6975 278 6108 279 6037 280 5788 281 6489 282 6830 283 6184 284 6885 285 7003 286 6396 287 5789 288 6549 289 6690 290 6189 291 6098 292 6223 293 6543 294 6824 295 7330 296 6093 297 7211 298 7299 299 6364 300 5760 301 6413 302 6636 303 6000 304 6149 305 6211 306 5417 307 6932 308 5909 309 6023 310 6837 311 5578 312 6867 313 6334 314 6509 315 6603 316 5873 317 5926 318 5548 319 5470 320 5754 321 5321 322 5621 323 4581 324 5356 325 6025 326 5644 327 5933 328 5939 329 5064 330 5751 331 5178 332 5802 333 4854 334 5178 335 4802 336 5447 337 4789 338 4461 339 4836 340 4501 341 4645 342 5313 343 4985 344 4808 345 4403 346 4112 347 4887 348 4352 349 4685 350 5330 351 5220 352 4705 353 4724 354 4599 355 4773 356 4814 357 5065 358 4556 359 4088 360 4079 361 3421 362 4544 363 3904 364 3911 365 4962 366 4565 367 3882 368 3639 369 4556 370 4985 371 4038 372 3837 373 4184 374 4350 375 4440 376 3359 377 4195 378 4040 379 3073 380 4226 381 4286 382 3996 383 4478 384 4953 385 3740 386 3675 387 3531 388 3739 389 3724 390 3694 391 3819 392 4135 393 4116 394 3575 395 4210 396 3712 397 3759 398 3586