BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.tsv

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Filename: BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.tsv
Full Path: s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/arriba/BreastNP_FFPE_L04_RNA_01_B23LG7FLT4_1.arriba.fusions.tsv
Size: 3.1 KB
Workflow Run: dev_rna_exp0011-2cae617
Published: May 16, 2026 1:54 AM

Content

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#gene1

gene2

strand1(gene/fusion)

strand2(gene/fusion)

breakpoint1

breakpoint2

site1

site2

type

split_reads1

split_reads2

discordant_mates

coverage1

coverage2

confidence

reading_frame

tags

retained_protein_domains

closest_genomic_breakpoint1

closest_genomic_breakpoint2

gene_id1

gene_id2

transcript_id1

transcript_id2

direction1

direction2

filters

fusion_transcript

peptide_sequence

read_identifiers

TJP1

-/-

chr15:29704222

chr15:29719138

CDS/splice-site

duplication/non-canonical_splicing

112

232

low

out-of-frame

Guanylate_kinase(100%),PDZ_domain(100%),Variant_SH3_domain(100%),ZU5_domain(78%)|ZU5_domain(100%)

ENSG00000104067

ENST00000346128

ENST00000356107

upstream

downstream

duplicates(53)

GGTCCCCATGGCCTCAAGTTCCTGAAGCCTGTGGAGCTGCGCTTACCACACT|GTGTATAGAAAGGATCCATATCCCGAGGAAATGATGAGGCAGAACCATGTTTTGAAACAGCCAGCCGTTAGTtACCCAGGGCACAGGCCAGACAAAGAGC

GPHGLKFLKPVELRLPH|cv*

LH00166:238:23LG7FLT4:5:1102:14082:21528,LH00166:238:23LG7FLT4:5:1113:4187:11341,LH00166:238:23LG7FLT4:5:1276:27576:25928,LH00166:238:23LG7FLT4:5:1391:46353:1925,LH00166:238:23LG7FLT4:5:2259:32462:17408,LH00166:238:23LG7FLT4:5:2293:12763:27763,LH00166:238:23LG7FLT4:5:2293:12771:27777,LH00166:238:23LG7FLT4:5:2294:32834:18529,LH00166:238:23LG7FLT4:5:2345:28279:22999,LH00166:238:23LG7FLT4:6:1166:51951:6437,LH00166:238:23LG7FLT4:6:1166:51959:6451,LH00166:238:23LG7FLT4:6:1222:9058:4923,LH00166:238:23LG7FLT4:6:1250:49346:28772,LH00166:238:23LG7FLT4:6:1323:4179:21444,LH00166:238:23LG7FLT4:6:1346:16452:16862,LH00166:238:23LG7FLT4:6:1346:30011:19048,LH00166:238:23LG7FLT4:6:1418:26079:27539,LH00166:238:23LG7FLT4:6:1464:21314:16456,LH00166:238:23LG7FLT4:6:2148:4325:27469,LH00166:238:23LG7FLT4:6:2323:41863:8693,LH00166:238:23LG7FLT4:6:2327:13151:12518,LH00166:238:23LG7FLT4:6:2327:13159:12504,LH00166:238:23LG7FLT4:6:2343:2715:28576,LH00166:238:23LG7FLT4:6:2350:41919:25157,LH00166:238:23LG7FLT4:6:2446:23765:21206,LH00166:238:23LG7FLT4:7:1108:50090:4839,LH00166:238:23LG7FLT4:7:1131:4333:6128,LH00166:238:23LG7FLT4:7:1233:40471:23125,LH00166:238:23LG7FLT4:7:1236:50074:9828,LH00166:238:23LG7FLT4:7:1250:4786:5568,LH00166:238:23LG7FLT4:7:1292:2027:21472,LH00166:238:23LG7FLT4:7:1379:41984:5456,LH00166:238:23LG7FLT4:7:2229:27907:22411,LH00166:238:23LG7FLT4:7:2246:50559:28212,LH00166:238:23LG7FLT4:7:2262:43877:11789,LH00166:238:23LG7FLT4:7:2297:14211:28786,LH00166:238:23LG7FLT4:7:2338:48666:2093,LH00166:238:23LG7FLT4:7:2358:47857:11145,LH00166:238:23LG7FLT4:7:2358:47873:11145,LH00166:238:23LG7FLT4:7:2384:5425:20463,LH00166:238:23LG7FLT4:7:2484:7359:18515,LH00166:238:23LG7FLT4:8:1168:8435:9001,LH00166:238:23LG7FLT4:8:1223:47776:11089,LH00166:238:23LG7FLT4:8:1272:8338:3844,LH00166:238:23LG7FLT4:8:1274:21371:25578,LH00166:238:23LG7FLT4:8:1414:50033:3312,LH00166:238:23LG7FLT4:8:1424:22641:14970,LH00166:238:23LG7FLT4:8:1482:27341:2093,LH00166:238:23LG7FLT4:8:2117:48893:12378,LH00166:238:23LG7FLT4:8:2130:13451:20715,LH00166:238:23LG7FLT4:8:2273:39476:28436,LH00166:238:23LG7FLT4:8:2336:34768:6409,LH00166:238:23LG7FLT4:8:2354:17010:22004,LH00166:238:23LG7FLT4:8:2372:27333:13401,LH00166:238:23LG7FLT4:8:2478:16784:6843

2 rows