File Info

Filename
BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/star_alignment/BreastNB_FFPE_L01_RNA_01_B23LG7FLT4_1.Log.final.out
Size
2.0 KB
Published
May 16, 2026 1:54 AM
                                 Started job on |	May 16 08:35:36
                             Started mapping on |	May 16 08:37:46
                                    Finished on |	May 16 08:46:19
       Mapping speed, Million of reads per hour |	316.69

                          Number of input reads |	45127756
                      Average input read length |	199
                                    UNIQUE READS:
                   Uniquely mapped reads number |	40647071
                        Uniquely mapped reads % |	90.07%
                          Average mapped length |	200.59
                       Number of splices: Total |	22542822
            Number of splices: Annotated (sjdb) |	22207075
                       Number of splices: GT/AG |	22304827
                       Number of splices: GC/AG |	156471
                       Number of splices: AT/AC |	13628
               Number of splices: Non-canonical |	67896
                      Mismatch rate per base, % |	0.57%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.00
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.58
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	2970476
             % of reads mapped to multiple loci |	6.58%
        Number of reads mapped to too many loci |	148945
             % of reads mapped to too many loci |	0.33%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	191322
       % of reads unmapped: too many mismatches |	0.42%
            Number of reads unmapped: too short |	614007
                 % of reads unmapped: too short |	1.36%
                Number of reads unmapped: other |	85145
                     % of reads unmapped: other |	0.19%
                                  CHIMERIC READS:
                       Number of chimeric reads |	805583
                            % of chimeric reads |	1.79%