File Info

Filename
BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Log.final.out
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion__2cae617--20260515-145204/star_alignment/BreastNB_FFPE_L02_RNA_01_B23LG7FLT4_1.Log.final.out
Size
2.0 KB
Published
May 16, 2026 1:54 AM
                                 Started job on |	May 16 08:35:44
                             Started mapping on |	May 16 08:37:15
                                    Finished on |	May 16 08:46:17
       Mapping speed, Million of reads per hour |	329.60

                          Number of input reads |	49623633
                      Average input read length |	199
                                    UNIQUE READS:
                   Uniquely mapped reads number |	45111457
                        Uniquely mapped reads % |	90.91%
                          Average mapped length |	200.14
                       Number of splices: Total |	28399290
            Number of splices: Annotated (sjdb) |	28022372
                       Number of splices: GT/AG |	28135556
                       Number of splices: GC/AG |	155958
                       Number of splices: AT/AC |	12209
               Number of splices: Non-canonical |	95567
                      Mismatch rate per base, % |	0.45%
                         Deletion rate per base |	0.01%
                        Deletion average length |	1.00
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.62
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	2915384
             % of reads mapped to multiple loci |	5.87%
        Number of reads mapped to too many loci |	187166
             % of reads mapped to too many loci |	0.38%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	144573
       % of reads unmapped: too many mismatches |	0.29%
            Number of reads unmapped: too short |	655696
                 % of reads unmapped: too short |	1.32%
                Number of reads unmapped: other |	120927
                     % of reads unmapped: other |	0.24%
                                  CHIMERIC READS:
                       Number of chimeric reads |	831058
                            % of chimeric reads |	1.67%