File Info
- Filename
- HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.filtered.tsv
- Full Path
- s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0011/B23LG7FLT4/nfcore_rnafusion_100M__5f1fa793--20260303-130000/starfusion/HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1.starfusion.starfusion.fusion_predictions.filtered.tsv
- Size
- 256.3 KB
- Workflow Run
- dev_rna_exp0011_5f1fa793
- Published
- Mar 03, 2026 4:56 PM
Content
View in new tab| #FusionName | JunctionReadCount | SpanningFragCount | est_J | est_S | SpliceType | LeftGene | LeftBreakpoint | RightGene | RightBreakpoint | JunctionReads | SpanningFrags | LargeAnchorSupport | FFPM | LeftBreakDinuc | LeftBreakEntropy | RightBreakDinuc | RightBreakEntropy | annots | breakpoint_ID | blacklisted | blacklist_reasons | CALL | filter_reason | FILTER | total_reads |
| STK25--IGH@-ext | 32 | 0 | 30.21 | 0.0 | INCL_NON_REF_SPLICE | STK25^ENSG00000115694.15 | chr2:241495500:- | IGH@-ext^IGH.g@-ext | chr14:105708667:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:23434:19987,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:35383:13471,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:10142:21766,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1161:32260:4755,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1196:4996:9183,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1206:7440:20982,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1221:28174:17801,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1221:49645:20099,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1258:4632:27245,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1287:21662:14059,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1290:49160:24190,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1295:21524:3340,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1301:19963:29529,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1331:22341:3382,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1331:32438:23392,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1332:32494:22117,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1369:8718:28072,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1479:30140:24625,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2105:44516:19594,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2110:19033:18585,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2117:30253:12378,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2122:9850:20225,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2140:3225:28702,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2153:42898:28030,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2313:4543:9828,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1158:51514:28800,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1256:18620:25241,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1325:45034:25704,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2131:24671:24933,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2290:29161:19370,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2312:28110:10234,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2327:25375:25564 | . | NO_LDAS | 0.4416 | TC | 1.8892 | TC | 1.6402 | ["INTERCHROMOSOMAL[chr2--chr14]"] | chr2:241495500-chr14:105708667 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 32 |
| IGH-@-ext--TNFRSF10B | 25 | 0 | 22.76 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105708665:+ | TNFRSF10B^ENSG00000120889.13 | chr8:23028497:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:26484:17506,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1135:39088:27539,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1145:33400:24302,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1159:44492:27988,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1193:35285:14172,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1223:36208:23812,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:32219:28086,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1226:38157:2864,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1239:22439:6969,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1336:7893:1280,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1405:6242:12070,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1454:10473:26012,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1485:25076:11201,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2173:5830:14017,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2292:50640:17114,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2347:6299:27357,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2457:34873:17100,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1158:51514:28800,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1402:22972:4139,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2290:29161:19370,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2405:44120:10304,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1268:10603:22369,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1380:4535:17745,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1365:51223:2009,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2298:22107:21220 | . | NO_LDAS | 0.3327 | TG | 1.6729 | GT | 1.6402 | ["INTERCHROMOSOMAL[chr14--chr8]"] | chr14:105708665-chr8:23028497 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 25 |
| IGH-@-ext--GOLGA8G | 19 | 0 | 19.0 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105708667:+ | GOLGA8G^ENSG00000183629.13 | chr15:28525914:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1103:47008:17885,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:41134:19622,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:50915:20869,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1124:42728:9632,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1186:31249:25227,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1249:43141:21696,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1288:3322:5694,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1409:41280:24555,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1433:11331:1883,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1441:43804:5638,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2112:34056:15096,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:12399:3284,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1345:9114:21584,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2361:31621:20911,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2473:3799:15629,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1320:50689:16666,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1492:39662:22369,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1256:40997:19104,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1260:35196:28646 | . | NO_LDAS | 0.2777 | GA | 1.6402 | GA | 1.9086 | ["INTERCHROMOSOMAL[chr14--chr15]"] | chr14:105708667-chr15:28525914 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 19 |
| PLCXD1--IGH@-ext | 18 | 0 | 14.66 | 0.0 | INCL_NON_REF_SPLICE | PLCXD1^ENSG00000182378.15 | chrX:293089:+ | IGH@-ext^IGH.g@-ext | chr14:105708667:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1104:18207:13373,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1119:15174:22243,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:28045:20911,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1212:9770:23980,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1227:16897:25255,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:27422:5540,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1454:16614:19804,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:43545:3480,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2111:13726:27413,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2138:3362:15937,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2249:45357:7179,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2439:50389:4881,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2464:16816:7151,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2205:26403:12630,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2457:37858:20197,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1215:27713:3158,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1354:16039:3284,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1469:12925:18852 | . | NO_LDAS | 0.2143 | AT | 1.9086 | TC | 1.6402 | ["INTERCHROMOSOMAL[chrX--chr14]"] | chrX:293089-chr14:105708667 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 18 |
| TMEM51-AS1--IGH@-ext | 16 | 0 | 6.07 | 0.0 | INCL_NON_REF_SPLICE | TMEM51-AS1^ENSG00000175147.13 | chr1:15114555:- | IGH@-ext^IGH.g@-ext | chr14:105708665:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:28045:20911,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:5110:18291,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1270:32867:17212,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1293:51643:13975,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:27422:5540,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1379:8127:17801,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:43545:3480,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2111:13726:27413,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2131:11833:7292,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2167:50228:6927,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1223:1146:1701,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1255:13200:24204,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1328:40180:28702,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2457:37858:20197,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1215:27713:3158,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1469:12925:18852 | . | NO_LDAS | 0.0887 | AT | 1.8892 | CA | 1.6729 | ["INTERCHROMOSOMAL[chr1--chr14]"] | chr1:15114555-chr14:105708665 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 16 |
| IGH-@-ext--KAZN | 16 | 0 | 6.07 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105708665:+ | KAZN^ENSG00000189337.17 | chr1:15114555:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:28045:20911,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:5110:18291,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1270:32867:17212,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1293:51643:13975,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:27422:5540,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1379:8127:17801,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:43545:3480,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2111:13726:27413,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2131:11833:7292,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2167:50228:6927,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1223:1146:1701,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1255:13200:24204,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1328:40180:28702,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2457:37858:20197,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1215:27713:3158,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1469:12925:18852 | . | NO_LDAS | 0.0887 | TG | 1.6729 | AT | 1.8892 | ["INTERCHROMOSOMAL[chr14--chr1]"] | chr14:105708665-chr1:15114555 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 16 |
| STK25--IGH@-ext | 15 | 0 | 12.47 | 0.0 | INCL_NON_REF_SPLICE | STK25^ENSG00000115694.15 | chr2:241495500:- | IGH@-ext^IGH.g@-ext | chr14:105644792:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1109:5903:3326,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1140:30140:27763,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:2505:7278,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1257:14260:27609,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1382:40204:26026,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1413:30318:11537,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1454:18580:1462,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2135:22665:22523,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2277:42809:10809,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2444:30634:19762,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2457:14381:16890,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1131:5773:11677,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1318:39177:10570,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1409:24129:11860,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2383:26176:28268 | . | NO_LDAS | 0.1823 | TC | 1.8892 | TG | 1.7465 | ["INTERCHROMOSOMAL[chr2--chr14]"] | chr2:241495500-chr14:105644792 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 15 |
| DHRSX--IGH@-ext | 15 | 0 | 13.1 | 0.0 | INCL_NON_REF_SPLICE | DHRSX^ENSG00000169084.15 | chrX:2266785:- | IGH@-ext^IGH.g@-ext | chr14:105708663:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:51538:17268,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1210:37187:1434,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:20821:2878,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1246:51109:1701,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1279:25448:14536,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1307:31176:9716,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1397:43618:28296,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1405:6242:12070,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2118:42785:22873,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2214:24081:7460,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2347:6299:27357,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1322:7974:21962,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2212:35261:20939,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1380:4535:17745,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2131:42833:6143 | . | NO_LDAS | 0.1915 | CA | 1.6402 | GC | 1.5546 | ["INTERCHROMOSOMAL[chrY--chr14]"] | chrX:2266785-chr14:105708663 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 15 |
| C22orf39--IGH@-ext | 13 | 0 | 12.55 | 0.0 | INCL_NON_REF_SPLICE | C22orf39^ENSG00000242259.9 | chr22:19356982:- | IGH@-ext^IGH.g@-ext | chr14:105708666:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1120:2756:5834,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:24283:16498,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1324:17892:25774,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1341:40868:29277,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:5676:26110,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1359:11865:21108,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1401:6655:6395,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2165:3298:28744,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2261:31629:6829,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1252:24485:1210,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2208:38165:27904,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2231:48262:26530,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1106:10271:27763 | . | NO_LDAS | 0.1835 | TC | 1.5301 | CC | 1.7465 | ["INTERCHROMOSOMAL[chr22--chr14]"] | chr22:19356982-chr14:105708666 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 13 |
| DHRSX--IGH@-ext | 12 | 0 | 9.3 | 0.0 | INCL_NON_REF_SPLICE | DHRSX^ENSG00000169084.15 | chrX:2266788:- | IGH@-ext^IGH.g@-ext | chr14:105644791:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:24032:21444,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1152:16848:25395,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:2505:7278,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1234:14276:17044,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1441:18628:3957,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2270:46344:8048,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2444:30634:19762,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1131:5773:11677,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1234:13806:26488,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1467:14073:29081,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1104:45778:8777,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2244:26378:27273 | . | NO_LDAS | 0.1359 | TG | 1.7465 | GC | 1.8062 | ["INTERCHROMOSOMAL[chrY--chr14]"] | chrX:2266788-chr14:105644791 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 12 |
| C22orf39--IGH@-ext | 11 | 0 | 10.45 | 0.0 | INCL_NON_REF_SPLICE | C22orf39^ENSG00000242259.9 | chr22:19356982:- | IGH@-ext^IGH.g@-ext | chr14:105588396:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1121:41418:5764,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:24073:7838,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1192:18701:1392,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1311:24137:1925,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1330:8402:4321,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2295:44743:24835,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2435:25100:12616,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1141:8613:1715,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2231:48262:26530,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1473:19437:10682,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2377:44354:3256 | . | NO_LDAS | 0.1528 | TC | 1.5301 | CC | 1.7465 | ["INTERCHROMOSOMAL[chr22--chr14]"] | chr22:19356982-chr14:105588396 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 11 |
| IGH-@-ext--Z82206.1 | 10 | 0 | 5.81 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105708664:+ | Z82206.1^ENSG00000225528.3 | chr22:39964584:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1248:22997:29459,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1258:4632:27245,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1440:32810:7782,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:46757:26334,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2105:44516:19594,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2122:9850:20225,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2150:28385:16203,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2234:18046:3985,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2313:4543:9828,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2327:25375:25564 | . | NO_LDAS | 0.0849 | CT | 1.5546 | GC | 1.8323 | ["INTERCHROMOSOMAL[chr14--chr22]"] | chr14:105708664-chr22:39964584 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 10 |
| IGH-@-ext--TNFRSF10B | 10 | 0 | 4.72 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105644791:+ | TNFRSF10B^ENSG00000120889.13 | chr8:23028496:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:2505:7278,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1413:30318:11537,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2141:19809:25872,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2270:46344:8048,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2381:12391:15236,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2444:30634:19762,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1131:5773:11677,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2383:26176:28268,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2244:26378:27273,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2265:4899:22243 | . | NO_LDAS | 0.069 | GC | 1.8062 | TG | 1.7465 | ["INTERCHROMOSOMAL[chr14--chr8]"] | chr14:105644791-chr8:23028496 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 10 |
| KRT13--TBCB | 9 | 0 | 9.0 | 0.0 | INCL_NON_REF_SPLICE | KRT13^ENSG00000171401.15 | chr17:41502937:- | TBCB^ENSG00000105254.12 | chr19:36115844:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1126:23183:16301,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:36014:8314,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2153:42356:13079,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2224:14664:25199,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2330:16193:9099,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2488:51344:17352,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1318:37842:10781,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1159:6097:21878,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2328:20723:15741 | . | NO_LDAS | 0.1316 | GT | 1.9656 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr17--chr19]"] | chr17:41502937-chr19:36115844 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 9 |
| IGH-@-ext--FBXO2 | 9 | 0 | 9.0 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105708667:+ | FBXO2^ENSG00000116661.11 | chr1:11654335:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:49613:6395,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1181:7399:13849,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1182:23134:9071,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1230:3548:22117,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1408:42744:7586,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1122:49936:4237,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2216:3370:1182,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2312:33311:27007,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2354:33392:15573 | . | NO_LDAS | 0.1316 | GA | 1.6402 | GA | 1.7819 | ["INTERCHROMOSOMAL[chr14--chr1]"] | chr14:105708667-chr1:11654335 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 9 |
| HLA-C--MUC16 | 9 | 0 | 9.0 | 0.0 | INCL_NON_REF_SPLICE | HLA-C^ENSG00000204525.17 | chr6:31269489:- | MUC16^ENSG00000181143.15 | chr19:8848985:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1247:3298:14508,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1378:50414:3214,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1414:31669:15587,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1455:40148:19174,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2371:38926:17002,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1113:35196:8917,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1276:13920:19650,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1182:20238:18824,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1224:43189:7600 | . | NO_LDAS | 0.1316 | GT | 1.9656 | AG | 1.8062 | ["GTEx_recurrent_StarF2019","INTERCHROMOSOMAL[chr6--chr19]"] | chr6:31269489-chr19:8848985 | False | 0 | Excluded annotation pattern: GTEx_recurrent_StarF2019 | FAIL | 9 | |
| IGH-@-ext--Z82206.1 | 7 | 0 | 2.11 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105644792:+ | Z82206.1^ENSG00000225528.3 | chr22:39964587:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1140:30140:27763,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1225:2505:7278,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1257:14260:27609,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1332:49580:15867,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2444:30634:19762,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1131:5773:11677,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1184:29299:10977 | . | NO_LDAS | 0.0308 | CA | 1.7465 | TA | 1.8062 | ["INTERCHROMOSOMAL[chr14--chr22]"] | chr14:105644792-chr22:39964587 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 7 |
| IGH-@-ext--SEZ6L2 | 7 | 0 | 7.0 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105708666:+ | SEZ6L2^ENSG00000174938.14 | chr16:29896882:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1240:36863:24807,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1257:41288:3943,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1271:12099:4503,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1369:8920:21808,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2348:9778:2695,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2358:16767:9982,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2427:2424:26362 | . | NO_LDAS | 0.1023 | GG | 1.7465 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr14--chr16]"] | chr14:105708666-chr16:29896882 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 7 |
| IGH-@-ext--MICALL2 | 6 | 0 | 6.0 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105708664:+ | MICALL2^ENSG00000164877.19 | chr7:1438317:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1128:27980:22285,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1136:12739:13233,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1423:9446:7922,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2173:39775:7656,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2231:1591:29011,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2458:7011:16680 | . | NO_LDAS | 0.0877 | CT | 1.5546 | GC | 1.8295 | ["INTERCHROMOSOMAL[chr14--chr7]"] | chr14:105708664-chr7:1438317 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 6 |
| HLA-A--C12orf40 | 6 | 0 | 6.0 | 0.0 | INCL_NON_REF_SPLICE | HLA-A^ENSG00000206503.13 | chr6:29942951:+ | C12orf40^ENSG00000180116.15 | chr12:39716794:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1151:43642:21108,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1295:5919:9576,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1443:20392:3648,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2192:37664:25662,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1135:47590:24779,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1382:12245:11117 | . | NO_LDAS | 0.0877 | AT | 1.5656 | AC | 1.7056 | ["INTERCHROMOSOMAL[chr6--chr12]"] | chr6:29942951-chr12:39716794 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 6 |
| KRT1--KRT4 | 5 | 0 | 5.0 | 0.0 | INCL_NON_REF_SPLICE | KRT1^ENSG00000167768.4 | chr12:52680030:- | KRT4^ENSG00000170477.13 | chr12:52813823:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1142:22196:4335,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2321:18402:17128,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2477:2699:6241,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2255:21807:18824,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1125:37356:29109 | . | YES_LDAS | 0.0731 | GT | 1.2729 | AG | 1.7819 | ["DGD_PARALOGS","GTEx_recurrent_StarF2019","HGNC_GENEFAM","INTRACHROMOSOMAL[chr12:0.13Mb]"] | chr12:52680030-chr12:52813823 | False | 0 | Excluded annotation pattern: GTEx_recurrent_StarF2019 | FAIL | 5 | |
| IGH-@-ext--CD81-AS1 | 5 | 0 | 5.0 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105708667:+ | CD81-AS1^ENSG00000238184.1 | chr11:2329037:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:5967:2457,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1252:13758:18137,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2152:26451:15993,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1107:31823:23560,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1353:45956:28282 | . | NO_LDAS | 0.0731 | GA | 1.6402 | AC | 1.5656 | ["INTERCHROMOSOMAL[chr14--chr11]"] | chr14:105708667-chr11:2329037 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 5 |
| IGH-@-ext--AC026120.1 | 5 | 0 | 2.5 | 0.0 | INCL_NON_REF_SPLICE | IGH-@-ext^IGH-.g@-ext | chr14:105708667:+ | AC026120.1^ENSG00000278399.1 | chr12:56985736:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1208:16242:27960,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1334:49807:2023,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1471:3589:17002,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1257:26370:14592,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1309:46927:21696 | . | NO_LDAS | 0.0365 | GA | 1.6402 | GC | 1.8892 | ["INTERCHROMOSOMAL[chr14--chr12]"] | chr14:105708667-chr12:56985736 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 5 |
| AFF3--HLA-C | 4 | 0 | 4.0 | 0.0 | INCL_NON_REF_SPLICE | AFF3^ENSG00000144218.20 | chr2:100104512:- | HLA-C^ENSG00000204525.17 | chr6:31270485:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1205:49613:23434,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1410:8014:3144,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2423:23628:9197,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1236:42591:4321 | . | NO_LDAS | 0.0585 | GC | 1.6895 | AG | 1.2867 | ["INTERCHROMOSOMAL[chr2--chr6]"] | chr2:100104512-chr6:31270485 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 4 | |
| ZNF720--ZNF254 | 3 | 0 | 2.67 | 0.0 | ONLY_REF_SPLICE | ZNF720^ENSG00000197302.10 | chr16:31723353:+ | ZNF254^ENSG00000213096.11 | chr19:24105940:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1101:45115:7011,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1485:21201:23125,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2312:17245:12126 | . | YES_LDAS | 0.039 | GT | 1.8892 | AG | 1.8892 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr16--chr19]"] | chr16:31723353-chr19:24105940 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 3 |
| SETD2--EP300 | 3 | 0 | 3.0 | 0.0 | INCL_NON_REF_SPLICE | SETD2^ENSG00000181555.21 | chr3:47164012:- | EP300^ENSG00000100393.14 | chr22:41092609:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1163:4996:28548,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2322:10732:15110,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1467:43966:23854 | . | YES_LDAS | 0.0439 | GT | 0.971 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr3--chr22]"] | chr3:47164012-chr22:41092609 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 3 | |
| PNMA6E--ZNF598 | 3 | 0 | 3.0 | 0.0 | INCL_NON_REF_SPLICE | PNMA6E^ENSG00000214897.5 | chrX:153397731:- | ZNF598^ENSG00000167962.14 | chr16:1999895:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1382:44047:2023,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1459:26459:12252,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2387:5247:9365 | . | NO_LDAS | 0.0439 | GT | 1.7056 | AG | 1.231 | ["INTERCHROMOSOMAL[chrX--chr16]"] | chrX:153397731-chr16:1999895 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 3 | |
| MRPS18A--PDC-AS1 | 3 | 0 | 3.0 | 0.0 | INCL_NON_REF_SPLICE | MRPS18A^ENSG00000096080.12 | chr6:43687668:- | PDC-AS1^ENSG00000229739.4 | chr1:186459293:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2168:44557:17366,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2229:36434:6213,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2260:28773:21724 | . | YES_LDAS | 0.0439 | GT | 1.7232 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr6--chr1]"] | chr6:43687668-chr1:186459293 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 3 |
| ZNF720--AC098826.1 | 2 | 0 | 0.22 | 0.0 | ONLY_REF_SPLICE | ZNF720^ENSG00000197302.10 | chr16:31723353:+ | AC098826.1^ENSG00000225594.1 | chr2:132087289:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1485:21201:23125,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1191:21371:25550 | . | YES_LDAS | 0.0032 | GT | 1.8892 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr16--chr2]"] | chr16:31723353-chr2:132087289 | False | 0 | Read count too low: 2 < 5 | FAIL | 2 | |
| TBC1D27P--RPS4X | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | TBC1D27P^ENSG00000128438.10 | chr17:16923225:- | RPS4X^ENSG00000198034.11 | chrX:72272711:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1291:11379:14466,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2169:7553:28128 | . | NO_LDAS | 0.0292 | GC | 1.8892 | AG | 1.3383 | ["INTERCHROMOSOMAL[chr17--chrX]"] | chr17:16923225-chrX:72272711 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| STUM--KCTD12 | 2 | 0 | 1.22 | 0.0 | INCL_NON_REF_SPLICE | STUM^ENSG00000203685.10 | chr1:226548952:+ | KCTD12^ENSG00000178695.6 | chr13:76886307:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1115:39686:25942,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1369:27058:17829 | . | NO_LDAS | 0.0178 | GT | 0.9183 | AG | 1.4256 | ["INTERCHROMOSOMAL[chr1--chr13]"] | chr1:226548952-chr13:76886307 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| SPNS2--PARD3B | 2 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SPNS2^ENSG00000183018.9 | chr17:4499153:+ | PARD3B^ENSG00000116117.18 | chr2:204546125:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1115:6008:3704,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1227:28749:5876 | . | NO_LDAS | 0.0146 | GT | 1.5546 | AG | 1.3383 | ["INTERCHROMOSOMAL[chr17--chr2]"] | chr17:4499153-chr2:204546125 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| SHC2--ADGRE2 | 2 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SHC2^ENSG00000129946.10 | chr19:419719:- | ADGRE2^ENSG00000127507.18 | chr19:14774054:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1352:16460:8917,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2148:43602:19804 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.5301 | ["INTRACHROMOSOMAL[chr19:14.27Mb]"] | chr19:419719-chr19:14774054 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| RPL17--RPL17P12 | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | RPL17^ENSG00000265681.7 | chr18:49491405:- | RPL17P12^ENSG00000230559.1 | chr2:146194373:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1313:23167:17170,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2148:26904:14760 | . | NO_LDAS | 0.0292 | GT | 1.9219 | AG | 1.8892 | ["TCGA_StarF2019","CCLE_StarF2019","INTERCHROMOSOMAL[chr18--chr2]"] | chr18:49491405-chr2:146194373 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 2 |
| RN7SL674P--RN7SL494P | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | RN7SL674P^ENSG00000239899.3 | chr2:11584878:+ | RN7SL494P^ENSG00000241175.3 | chr15:50244810:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1218:24607:27567,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2176:31532:2822 | . | YES_LDAS | 0.0292 | GT | 1.9086 | AG | 1.9656 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr2--chr15]"] | chr2:11584878-chr15:50244810 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 2 | |
| PRDM8--EIF3J | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | PRDM8^ENSG00000152784.16 | chr4:80202435:+ | EIF3J^ENSG00000104131.13 | chr15:44537195:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1332:12108:20519,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1489:35221:3718 | . | NO_LDAS | 0.0292 | GT | 1.1589 | AG | 1.4716 | ["INTERCHROMOSOMAL[chr4--chr15]"] | chr4:80202435-chr15:44537195 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| PPM1A--STUM | 2 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PPM1A^ENSG00000100614.18 | chr14:60249239:+ | STUM^ENSG00000203685.10 | chr1:226548932:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2207:51522:2583,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1310:37632:13443 | . | NO_LDAS | 0.0146 | GT | 0.9183 | AG | 1.231 | ["INTERCHROMOSOMAL[chr14--chr1]"] | chr14:60249239-chr1:226548932 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| POU5F1--TYW1 | 2 | 0 | 2.0 | 0.0 | ONLY_REF_SPLICE | POU5F1^ENSG00000204531.20 | chr6:31166534:- | TYW1^ENSG00000198874.13 | chr7:67067285:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2214:15327:12896,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2394:24728:5302 | . | YES_LDAS | 0.0292 | GT | 1.9329 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr6--chr7]"] | chr6:31166534-chr7:67067285 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 2 |
| POLE--ZC3H18 | 2 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | POLE^ENSG00000177084.18 | chr12:132624499:- | ZC3H18^ENSG00000158545.16 | chr16:88611291:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2374:37421:7334,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2416:41013:6577 | . | NO_LDAS | 0.0073 | GT | 1.6402 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr12--chr16]"] | chr12:132624499-chr16:88611291 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| MED13L--UBC | 2 | 0 | 2.0 | 0.0 | ONLY_REF_SPLICE | MED13L^ENSG00000123066.9 | chr12:116277060:- | UBC^ENSG00000150991.15 | chr12:124913774:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2119:4341:11215,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1173:41434:25718 | . | YES_LDAS | 0.0292 | GT | 1.8323 | AG | 1.9329 | ["GTEx_recurrent_StarF2019","INTRACHROMOSOMAL[chr12:8.63Mb]"] | chr12:116277060-chr12:124913774 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 2 |
| LYRM4-AS1--NFATC2 | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | LYRM4-AS1^ENSG00000272142.4 | chr6:5033736:+ | NFATC2^ENSG00000101096.20 | chr20:51435314:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:19291:6563,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2464:27648:8819 | . | NO_LDAS | 0.0292 | GT | 1.8256 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr6--chr20]"] | chr6:5033736-chr20:51435314 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| LINC02785--SPRR3 | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | LINC02785^ENSG00000226822.3 | chr1:108075939:+ | SPRR3^ENSG00000163209.15 | chr1:153003039:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1269:44961:22607,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1142:20424:13961 | . | NO_LDAS | 0.0292 | GT | 1.9219 | AG | 1.9086 | ["INTRACHROMOSOMAL[chr1:44.93Mb]"] | chr1:108075939-chr1:153003039 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| KRT77--KRT4 | 2 | 0 | 2.0 | 0.0 | ONLY_REF_SPLICE | KRT77^ENSG00000189182.10 | chr12:52702892:- | KRT4^ENSG00000170477.13 | chr12:52811977:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2416:2715:1645,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2155:26030:12182 | . | YES_LDAS | 0.0292 | GT | 1.9329 | AG | 1.9086 | ["DGD_PARALOGS","GTEx_recurrent_StarF2019","HGNC_GENEFAM","INTRACHROMOSOMAL[chr12:0.10Mb]"] | chr12:52702892-chr12:52811977 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 2 |
| KRT4--RAB3IL1 | 2 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | KRT4^ENSG00000170477.13 | chr12:52813800:- | RAB3IL1^ENSG00000167994.13 | chr11:61904607:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2214:48504:8258,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2325:19736:20729 | . | NO_LDAS | 0.0146 | GT | 1.4295 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr12--chr11]"] | chr12:52813800-chr11:61904607 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| HLA-C--NUMA1 | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | HLA-C^ENSG00000204525.17 | chr6:31269493:- | NUMA1^ENSG00000137497.18 | chr11:72013673:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1131:49241:17633,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1148:40592:18235 | . | NO_LDAS | 0.0292 | GT | 1.8256 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr6--chr11]"] | chr6:31269493-chr11:72013673 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 2 |
| HLA-B--ZBTB43 | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | HLA-B^ENSG00000234745.13 | chr6:31354629:- | ZBTB43^ENSG00000169155.10 | chr9:126833169:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1450:5441:28170,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2256:35253:17927 | . | NO_LDAS | 0.0292 | GT | 1.9656 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr6--chr9]"] | chr6:31354629-chr9:126833169 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| HLA-B--HLA-V | 2 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | HLA-B^ENSG00000234745.13 | chr6:31357086:- | HLA-V^ENSG00000181126.13 | chr6:29792437:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1182:47623:3564,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1308:12957:8146 | . | YES_LDAS | 0.0146 | GT | 1.7056 | AG | 1.8323 | ["HGNC_GENEFAM","INTRACHROMOSOMAL[chr6:1.56Mb]"] | chr6:31357086-chr6:29792437 | True | pair|MHC complexes|HLA-V HLA-B; pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 2 |
| GZMM--SRCAP | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | GZMM^ENSG00000197540.8 | chr19:544126:+ | SRCAP^ENSG00000080603.17 | chr16:30725836:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2493:18313:5064,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2143:2383:29683 | . | YES_LDAS | 0.0292 | GT | 1.8892 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr19--chr16]"] | chr19:544126-chr16:30725836 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| FMNL3--CYBRD1 | 2 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | FMNL3^ENSG00000161791.14 | chr12:49644112:- | CYBRD1^ENSG00000071967.12 | chr2:171522488:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1109:43319:10262,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2133:38335:10066 | . | NO_LDAS | 0.0073 | GT | 1.8323 | AG | 1.3996 | ["INTERCHROMOSOMAL[chr12--chr2]"] | chr12:49644112-chr2:171522488 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| FLI1--ETS1 | 2 | 0 | 2.0 | 0.0 | ONLY_REF_SPLICE | FLI1^ENSG00000151702.17 | chr11:128694276:+ | ETS1^ENSG00000134954.14 | chr11:128490576:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1158:13192:27049,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2432:45851:1448 | . | YES_LDAS | 0.0292 | GT | 1.9086 | AG | 1.8256 | ["INTRACHROMOSOMAL[chr11:0.10Mb]","LOCAL_INVERSION:+:-:[98977]"] | chr11:128694276-chr11:128490576 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 2 |
| FAF1--STUM | 2 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FAF1^ENSG00000185104.20 | chr1:50959894:- | STUM^ENSG00000203685.10 | chr1:226548932:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2207:51522:2583,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1310:37632:13443 | . | NO_LDAS | 0.0146 | GT | 0.9183 | AG | 1.231 | ["INTRACHROMOSOMAL[chr1:175.59Mb]"] | chr1:50959894-chr1:226548932 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| COL7A1--COL4A5 | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | COL7A1^ENSG00000114270.18 | chr3:48583938:- | COL4A5^ENSG00000188153.14 | chrX:108597453:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1350:38562:25592,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2322:33627:16315 | . | NO_LDAS | 0.0292 | GT | 1.7968 | AG | 1.7056 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr3--chrX]"] | chr3:48583938-chrX:108597453 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 2 | |
| CBX8--RBM25 | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | CBX8^ENSG00000141570.11 | chr17:79795264:- | RBM25^ENSG00000119707.14 | chr14:73105901:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1187:35884:26166,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1226:49419:23378 | . | NO_LDAS | 0.0292 | GT | 1.3383 | AG | 0.9968 | ["INTERCHROMOSOMAL[chr17--chr14]"] | chr17:79795264-chr14:73105901 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| ACTG1P16--ACTBP11 | 2 | 0 | 2.0 | 0.0 | INCL_NON_REF_SPLICE | ACTG1P16^ENSG00000260298.2 | chr16:50059046:- | ACTBP11^ENSG00000188460.4 | chr1:223864666:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1280:8734:19917,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1362:14260:16764 | . | NO_LDAS | 0.0292 | GT | 1.585 | AG | 1.9219 | ["INTERCHROMOSOMAL[chr16--chr1]"] | chr16:50059046-chr1:223864666 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| AC078883.1--AC079776.1 | 2 | 0 | 0.67 | 0.0 | INCL_NON_REF_SPLICE | AC078883.1^ENSG00000225205.5 | chr2:172512334:- | AC079776.1^ENSG00000217289.3 | chr2:129993386:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2191:23142:19987,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2426:30253:3382 | . | YES_LDAS | 0.0098 | GT | 1.9219 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr2:42.49Mb]"] | chr2:172512334-chr2:129993386 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 2 | |
| AC055716.1--KRT4 | 2 | 0 | 2.0 | 0.0 | ONLY_REF_SPLICE | AC055716.1^ENSG00000257343.1 | chr12:52747353:- | KRT4^ENSG00000170477.13 | chr12:52807864:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2332:10805:15236,&HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2441:49508:27792 | . | YES_LDAS | 0.0292 | GT | 1.6402 | AG | 1.9656 | ["GTEx_recurrent_StarF2019","INTRACHROMOSOMAL[chr12:0.06Mb]","LOCAL_REARRANGEMENT:-:[58241]"] | chr12:52747353-chr12:52807864 | False | 0 | Excluded annotation pattern: GTEx_recurrent_StarF2019 | FAIL | 2 | |
| ZNF865--ZNF8 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZNF865^ENSG00000261221.4 | chr19:55615317:+ | ZNF8^ENSG00000278129.2 | chr19:58294715:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1303:26572:13793 | . | NO_LDAS | 0.0146 | GC | 1.8256 | AG | 1.8892 | ["HGNC_GENEFAM","INTRACHROMOSOMAL[chr19:2.66Mb]"] | chr19:55615317-chr19:58294715 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| ZNF730--ENDOG | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZNF730^ENSG00000183850.14 | chr19:23143980:+ | ENDOG^ENSG00000167136.7 | chr9:128822628:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1252:26637:24947 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr19--chr9]"] | chr19:23143980-chr9:128822628 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ZNF718--CARD8 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ZNF718^ENSG00000250312.8 | chr4:131505:+ | CARD8^ENSG00000105483.18 | chr19:48241063:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:45689:5568 | . | YES_LDAS | 0.0146 | GT | 1.4566 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr4--chr19]"] | chr4:131505-chr19:48241063 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ZNF669--ZNF136 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ZNF669^ENSG00000188295.15 | chr1:247103939:- | ZNF136^ENSG00000196646.12 | chr19:12185785:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2377:50478:20757 | . | NO_LDAS | 0.0146 | GT | 1.7232 | AG | 1.7819 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr1--chr19]"] | chr1:247103939-chr19:12185785 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| ZNF586--AC005702.5 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZNF586^ENSG00000083828.16 | chr19:57769832:+ | AC005702.5^ENSG00000287664.1 | chr17:60019144:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1161:5393:19987 | . | NO_LDAS | 0.0146 | GC | 1.1033 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr19--chr17]"] | chr19:57769832-chr17:60019144 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ZNF432--PDIA3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZNF432^ENSG00000256087.7 | chr19:52046854:- | PDIA3^ENSG00000167004.13 | chr15:43772027:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2437:46134:4545 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr19--chr15]"] | chr19:52046854-chr15:43772027 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ZNF418--ZSCAN30 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZNF418^ENSG00000196724.13 | chr19:57926547:- | ZSCAN30^ENSG00000186814.14 | chr18:35253758:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2368:23927:27763 | . | NO_LDAS | 0.0146 | GT | 1.5219 | AG | 1.8323 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr19--chr18]"] | chr19:57926547-chr18:35253758 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| ZNF407--ZNF774 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZNF407^ENSG00000215421.9 | chr18:74881119:+ | ZNF774^ENSG00000196391.11 | chr15:90360943:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2182:23587:25830 | . | NO_LDAS | 0.0146 | GT | 1.5656 | AG | 1.9329 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr18--chr15]"] | chr18:74881119-chr15:90360943 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| ZNF202--PACRGL | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZNF202^ENSG00000166261.11 | chr11:123741538:- | PACRGL^ENSG00000163138.19 | chr4:20704466:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1461:23684:20029 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.5628 | ["INTERCHROMOSOMAL[chr11--chr4]"] | chr11:123741538-chr4:20704466 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ZNF195--FCHSD2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ZNF195^ENSG00000005801.18 | chr11:3370975:- | FCHSD2^ENSG00000137478.15 | chr11:73083740:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2158:49047:12532 | . | NO_LDAS | 0.0146 | GT | 1.8256 | AG | 1.9219 | ["INTRACHROMOSOMAL[chr11:69.46Mb]"] | chr11:3370975-chr11:73083740 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ZNF185--LINC01808 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZNF185^ENSG00000147394.18 | chrX:152970541:+ | LINC01808^ENSG00000237992.3 | chr2:19519575:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1121:35601:20043 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.4256 | ["INTERCHROMOSOMAL[chrX--chr2]"] | chrX:152970541-chr2:19519575 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ZNF154--ZNF132 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | ZNF154^ENSG00000179909.15 | chr19:57708939:- | ZNF132^ENSG00000131849.12 | chr19:58437173:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2456:1890:9519 | . | YES_LDAS | 0.0073 | GT | 1.8256 | AG | 1.9656 | ["DGD_PARALOGS","HGNC_GENEFAM","INTRACHROMOSOMAL[chr19:0.72Mb]"] | chr19:57708939-chr19:58437173 | False | 0 | Excluded annotation pattern: DGD_PARALOGS | FAIL | 1 | |
| ZNF101--AC008543.2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZNF101^ENSG00000181896.12 | chr19:19680340:+ | AC008543.2^ENSG00000220949.2 | chr19:11759933:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1391:9244:13289 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9329 | ["INTRACHROMOSOMAL[chr19:7.91Mb]"] | chr19:19680340-chr19:11759933 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ZKSCAN5--FASN | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZKSCAN5^ENSG00000196652.12 | chr7:99512536:+ | FASN^ENSG00000169710.9 | chr17:82085802:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2251:11905:9716 | . | NO_LDAS | 0.0146 | GT | 1.4256 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr7--chr17]"] | chr7:99512536-chr17:82085802 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ZKSCAN1--ZNF655 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ZKSCAN1^ENSG00000106261.17 | chr7:100024307:+ | ZNF655^ENSG00000197343.11 | chr7:99560533:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1409:49500:1490 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.8892 | ["HGNC_GENEFAM","INTRACHROMOSOMAL[chr7:0.44Mb]"] | chr7:100024307-chr7:99560533 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| ZHX2--DCAF5 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ZHX2^ENSG00000178764.8 | chr8:122781946:+ | DCAF5^ENSG00000139990.18 | chr14:69122360:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1408:32187:7516 | . | YES_LDAS | 0.0146 | GT | 1.5301 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr8--chr14]"] | chr8:122781946-chr14:69122360 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ZFHX4--SGSM2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZFHX4^ENSG00000091656.19 | chr8:76851872:+ | SGSM2^ENSG00000141258.13 | chr17:2373472:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1480:9948:26054 | . | NO_LDAS | 0.0146 | AT | 1.8295 | AC | 1.8892 | ["INTERCHROMOSOMAL[chr8--chr17]"] | chr8:76851872-chr17:2373472 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ZCCHC8--LIG1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ZCCHC8^ENSG00000033030.15 | chr12:122499302:- | LIG1^ENSG00000105486.14 | chr19:48151334:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1112:35399:6157 | . | YES_LDAS | 0.0146 | GT | 1.7465 | AG | 1.5301 | ["INTERCHROMOSOMAL[chr12--chr19]"] | chr12:122499302-chr19:48151334 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ZBTB5--ITPR2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ZBTB5^ENSG00000168795.5 | chr9:37465215:- | ITPR2^ENSG00000123104.12 | chr12:26632059:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2169:7779:20897 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr9--chr12]"] | chr9:37465215-chr12:26632059 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ZBTB20--UNC50 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ZBTB20^ENSG00000181722.17 | chr3:115071219:- | UNC50^ENSG00000115446.12 | chr2:98609756:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2179:49694:16624 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr3--chr2]"] | chr3:115071219-chr2:98609756 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| YBX1--FYN | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | YBX1^ENSG00000065978.19 | chr1:42683466:+ | FYN^ENSG00000010810.17 | chr6:111720062:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1391:7116:3999 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr1--chr6]"] | chr1:42683466-chr6:111720062 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| WSB1--S100A3 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | WSB1^ENSG00000109046.15 | chr17:27297308:+ | S100A3^ENSG00000188015.10 | chr1:153548490:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1392:40722:14003 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr17--chr1]"] | chr17:27297308-chr1:153548490 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| WDSUB1--SOS1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | WDSUB1^ENSG00000196151.11 | chr2:159286583:- | SOS1^ENSG00000115904.14 | chr2:39067753:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1313:29574:15236 | . | YES_LDAS | 0.0146 | GT | 1.5546 | AG | 1.9219 | ["INTRACHROMOSOMAL[chr2:120.11Mb]"] | chr2:159286583-chr2:39067753 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| WDR44--IL13RA1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | WDR44^ENSG00000131725.14 | chrX:118346580:+ | IL13RA1^ENSG00000131724.11 | chrX:118741017:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1188:29906:9730 | . | NO_LDAS | 0.0146 | GT | 1.7056 | AG | 1.8323 | ["INTRACHROMOSOMAL[chrX:0.28Mb]"] | chrX:118346580-chrX:118741017 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| WDPCP--NEMP2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | WDPCP^ENSG00000143951.16 | chr2:63259307:- | NEMP2^ENSG00000189362.12 | chr2:190525378:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1253:2262:6801 | . | YES_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8256 | ["INTRACHROMOSOMAL[chr2:126.68Mb]"] | chr2:63259307-chr2:190525378 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| VWA5A--RPS19BP1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | VWA5A^ENSG00000110002.16 | chr11:124136297:+ | RPS19BP1^ENSG00000187051.9 | chr22:39531638:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1160:51263:24330 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr11--chr22]"] | chr11:124136297-chr22:39531638 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| VTI1A--AL158212.1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | VTI1A^ENSG00000151532.14 | chr10:112668998:+ | AL158212.1^ENSG00000225292.2 | chr10:112888735:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1230:31240:22355 | . | YES_LDAS | 0.0146 | GT | 1.7465 | AG | 1.8892 | ["GTEx_recurrent_StarF2019","INTRACHROMOSOMAL[chr10:0.07Mb]","NEIGHBORS[69991]"] | chr10:112668998-chr10:112888735 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| VPS26C--TTC3 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | VPS26C^ENSG00000157538.14 | chr21:37267238:- | TTC3^ENSG00000182670.13 | chr21:37108392:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1120:5369:23812 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr21:0.02Mb]","LOCAL_INVERSION:-:+:[20308]"] | chr21:37267238-chr21:37108392 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| VPS13D--AL161935.3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | VPS13D^ENSG00000048707.15 | chr1:12327787:+ | AL161935.3^ENSG00000286694.1 | chr10:31608792:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1446:34185:2794 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr1--chr10]"] | chr1:12327787-chr10:31608792 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| VPS13A--DNMT1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | VPS13A^ENSG00000197969.14 | chr9:77206079:+ | DNMT1^ENSG00000130816.17 | chr19:10160017:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2369:23539:26614 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr9--chr19]"] | chr9:77206079-chr19:10160017 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| VCPKMT--SOS2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | VCPKMT^ENSG00000100483.14 | chr14:50116080:- | SOS2^ENSG00000100485.12 | chr14:50150230:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1223:47145:19580 | . | YES_LDAS | 0.0146 | GT | 1.9899 | AG | 1.6402 | ["INTRACHROMOSOMAL[chr14:0.00Mb]","LOCAL_REARRANGEMENT:-:[530]"] | chr14:50116080-chr14:50150230 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| VCP--AP1G2 | 1 | 0 | 0.2 | 0.0 | INCL_NON_REF_SPLICE | VCP^ENSG00000165280.18 | chr9:35072575:- | AP1G2^ENSG00000213983.12 | chr14:23567711:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1195:20238:14900 | . | NO_LDAS | 0.0029 | GC | 1.5058 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr9--chr14]"] | chr9:35072575-chr14:23567711 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| VASP--CSPG4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | VASP^ENSG00000125753.14 | chr19:45526972:+ | CSPG4^ENSG00000173546.7 | chr15:75676607:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2409:24299:8062 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr19--chr15]"] | chr19:45526972-chr15:75676607 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| VAMP2--SCNN1A | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | VAMP2^ENSG00000220205.9 | chr17:8161473:- | SCNN1A^ENSG00000111319.13 | chr12:6349405:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1270:15910:13905 | . | YES_LDAS | 0.0146 | GT | 1.8256 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr17--chr12]"] | chr17:8161473-chr12:6349405 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| UTP6--UBE2G2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | UTP6^ENSG00000108651.10 | chr17:31866655:- | UBE2G2^ENSG00000184787.19 | chr21:44770527:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2123:47687:12616 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr17--chr21]"] | chr17:31866655-chr21:44770527 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| USP24--RNA5-8SP2 | 1 | 0 | 0.14 | 0.0 | INCL_NON_REF_SPLICE | USP24^ENSG00000162402.14 | chr1:55214790:- | RNA5-8SP2^ENSG00000200434.1 | chr16:34163018:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1351:43861:7670 | . | NO_LDAS | 0.002 | GT | 1.6049 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr1--chr16]"] | chr1:55214790-chr16:34163018 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| USP24--5_8S_rRNA | 1 | 0 | 0.14 | 0.0 | INCL_NON_REF_SPLICE | USP24^ENSG00000162402.14 | chr1:55214790:- | 5_8S_rRNA^ENSG00000277739.1 | chr21:8256840:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1351:43861:7670 | . | NO_LDAS | 0.002 | GT | 1.6049 | AG | 1.5219 | ["INTERCHROMOSOMAL[chr1--chr20]"] | chr1:55214790-chr21:8256840 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| USP24--5_8S_rRNA | 1 | 0 | 0.14 | 0.0 | INCL_NON_REF_SPLICE | USP24^ENSG00000162402.14 | chr1:55214790:- | 5_8S_rRNA^ENSG00000283568.1 | chr20:29297187:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1351:43861:7670 | . | NO_LDAS | 0.002 | GT | 1.6049 | AG | 1.5219 | ["INTERCHROMOSOMAL[chr1--chr20]"] | chr1:55214790-chr20:29297187 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| USP11--ORC1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | USP11^ENSG00000102226.10 | chrX:47242306:+ | ORC1^ENSG00000085840.13 | chr1:52383500:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1341:4050:7179 | . | NO_LDAS | 0.0146 | GT | 1.585 | AG | 1.5656 | ["INTERCHROMOSOMAL[chrX--chr1]"] | chrX:47242306-chr1:52383500 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| UQCC1--WDR26 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | UQCC1^ENSG00000101019.22 | chr20:35409345:- | WDR26^ENSG00000162923.17 | chr1:224389860:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1232:39201:14172 | . | YES_LDAS | 0.0146 | GC | 1.9329 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr20--chr1]"] | chr20:35409345-chr1:224389860 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| UNC93B1--RNU5A-1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | UNC93B1^ENSG00000110057.8 | chr11:68003948:- | RNU5A-1^ENSG00000199568.1 | chr15:65296071:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1191:51247:27806 | . | YES_LDAS | 0.0146 | GT | 1.2867 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr11--chr15]"] | chr11:68003948-chr15:65296071 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| UFD1--PPP4C | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | UFD1^ENSG00000070010.19 | chr22:19479148:- | PPP4C^ENSG00000149923.14 | chr16:30076002:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1465:21775:21598 | . | NO_LDAS | 0.0146 | GT | 1.5546 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr22--chr16]"] | chr22:19479148-chr16:30076002 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| UBXN6--TAB1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | UBXN6^ENSG00000167671.12 | chr19:4457615:- | TAB1^ENSG00000100324.14 | chr22:39426703:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2219:50478:17478 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr19--chr22]"] | chr19:4457615-chr22:39426703 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| UBXN2A--SURF4 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | UBXN2A^ENSG00000173960.14 | chr2:23940648:+ | SURF4^ENSG00000148248.14 | chr9:133367445:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2217:8046:10346 | . | YES_LDAS | 0.0146 | GT | 1.6895 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr2--chr9]"] | chr2:23940648-chr9:133367445 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| UBAP2--CTCFL | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | UBAP2^ENSG00000137073.23 | chr9:33932562:- | CTCFL^ENSG00000124092.12 | chr20:57518772:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1171:13709:13541 | . | NO_LDAS | 0.0146 | GT | 1.7056 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr9--chr20]"] | chr9:33932562-chr20:57518772 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TYMP--HBB | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TYMP^ENSG00000025708.14 | chr22:50529527:- | HBB^ENSG00000244734.4 | chr11:5226967:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2463:16015:14788 | . | NO_LDAS | 0.0146 | GT | 1.5656 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr22--chr11]"] | chr22:50529527-chr11:5226967 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TXNDC11--BBX | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TXNDC11^ENSG00000153066.13 | chr16:11733982:- | BBX^ENSG00000114439.19 | chr3:107807474:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1417:16509:6899 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr16--chr3]"] | chr16:11733982-chr3:107807474 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TXLNA--SALL4P2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TXLNA^ENSG00000084652.16 | chr1:32194160:+ | SALL4P2^ENSG00000238040.1 | chrX:129872782:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1388:38319:5358 | . | NO_LDAS | 0.0146 | GT | 1.6402 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr1--chrX]"] | chr1:32194160-chrX:129872782 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TUBA1C--RUFY2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TUBA1C^ENSG00000167553.16 | chr12:49258001:+ | RUFY2^ENSG00000204130.14 | chr10:68346084:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1381:1809:7193 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr12--chr10]"] | chr12:49258001-chr10:68346084 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TSTD3--CAAP1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TSTD3^ENSG00000279170.3 | chr6:99531790:+ | CAAP1^ENSG00000120159.13 | chr9:26887513:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1357:47162:12910 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.5329 | ["INTERCHROMOSOMAL[chr6--chr9]"] | chr6:99531790-chr9:26887513 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TSR3--MIR663AHG | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TSR3^ENSG00000007520.4 | chr16:1349473:- | MIR663AHG^ENSG00000227195.11 | chr20:26208395:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2217:7213:20982 | . | NO_LDAS | 0.0146 | GT | 1.6895 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr16--chr20]"] | chr16:1349473-chr20:26208395 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TSR2--CRNN | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TSR2^ENSG00000158526.8 | chrX:54444805:+ | CRNN^ENSG00000143536.7 | chr1:152409655:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2109:30351:18655 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.4295 | ["INTERCHROMOSOMAL[chrX--chr1]"] | chrX:54444805-chr1:152409655 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TSC22D2--SLC20A2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TSC22D2^ENSG00000196428.12 | chr3:150411308:+ | SLC20A2^ENSG00000168575.10 | chr8:42535335:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2152:13904:3200 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr3--chr8]"] | chr3:150411308-chr8:42535335 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TRRAP--MEX3B | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TRRAP^ENSG00000196367.14 | chr7:98949506:+ | MEX3B^ENSG00000183496.6 | chr15:82045989:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1120:46628:15741 | . | NO_LDAS | 0.0146 | GC | 1.4566 | AG | 1.5329 | ["INTERCHROMOSOMAL[chr7--chr15]"] | chr7:98949506-chr15:82045989 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TRRAP--CRLS1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TRRAP^ENSG00000196367.14 | chr7:98893881:+ | CRLS1^ENSG00000088766.12 | chr20:6015361:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2329:32446:3620 | . | YES_LDAS | 0.0146 | GT | 1.6895 | AG | 1.4566 | ["INTERCHROMOSOMAL[chr7--chr20]"] | chr7:98893881-chr20:6015361 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TRRAP--CRCP | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TRRAP^ENSG00000196367.14 | chr7:98912213:+ | CRCP^ENSG00000241258.7 | chr7:66153105:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2125:40350:24681 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.8062 | ["INTRACHROMOSOMAL[chr7:32.72Mb]"] | chr7:98912213-chr7:66153105 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TRPS1--WWP1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TRPS1^ENSG00000104447.13 | chr8:115587001:- | WWP1^ENSG00000123124.14 | chr8:86374030:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2288:16379:19034 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.6729 | ["INTRACHROMOSOMAL[chr8:28.93Mb]"] | chr8:115587001-chr8:86374030 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TRIP13--DUSP9 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TRIP13^ENSG00000071539.14 | chr5:893090:+ | DUSP9^ENSG00000130829.18 | chrX:153647508:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1369:12504:18459 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr5--chrX]"] | chr5:893090-chrX:153647508 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TRIM52--ZNF207 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TRIM52^ENSG00000183718.5 | chr5:181260001:- | ZNF207^ENSG00000010244.19 | chr17:32369295:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1125:45196:2864 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.2867 | ["INTERCHROMOSOMAL[chr5--chr17]"] | chr5:181260001-chr17:32369295 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TRIM38--RBMS3-AS3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TRIM38^ENSG00000112343.11 | chr6:25972099:+ | RBMS3-AS3^ENSG00000235904.3 | chr3:29261045:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2274:47712:19524 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr6--chr3]"] | chr6:25972099-chr3:29261045 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TRIM38--OSBPL2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TRIM38^ENSG00000112343.11 | chr6:25973285:+ | OSBPL2^ENSG00000130703.17 | chr20:62284586:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1269:14243:7768 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr6--chr20]"] | chr6:25973285-chr20:62284586 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TRAPPC9--ITFG2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TRAPPC9^ENSG00000167632.18 | chr8:140275674:- | ITFG2^ENSG00000111203.13 | chr12:2820092:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1233:17730:27988 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr8--chr12]"] | chr8:140275674-chr12:2820092 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TPT1-AS1--NPAS2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TPT1-AS1^ENSG00000170919.16 | chr13:45370092:+ | NPAS2^ENSG00000170485.17 | chr2:100937753:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1137:36151:9898 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr13--chr2]"] | chr13:45370092-chr2:100937753 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TPRN--SLC16A1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TPRN^ENSG00000176058.13 | chr9:137193633:- | SLC16A1^ENSG00000155380.13 | chr1:112956191:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2316:34938:25956 | . | NO_LDAS | 0.0146 | GT | 1.6402 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr9--chr1]"] | chr9:137193633-chr1:112956191 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TPM3--INO80D | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TPM3^ENSG00000143549.21 | chr1:154176115:- | INO80D^ENSG00000114933.16 | chr2:206009778:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2184:45705:16049 | . | YES_LDAS | 0.0146 | GT | 1.5058 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr1--chr2]"] | chr1:154176115-chr2:206009778 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TPI1--NCOA6 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TPI1^ENSG00000111669.15 | chr12:6868845:+ | NCOA6^ENSG00000198646.14 | chr20:34740972:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2222:47857:12490 | . | NO_LDAS | 0.0146 | GT | 1.6895 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr12--chr20]"] | chr12:6868845-chr20:34740972 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TPGS1--LMF1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TPGS1^ENSG00000141933.9 | chr19:507844:+ | LMF1^ENSG00000103227.19 | chr16:954666:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2178:44524:24373 | . | YES_LDAS | 0.0146 | GT | 1.6402 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr19--chr16]"] | chr19:507844-chr16:954666 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TP63--ITPR2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TP63^ENSG00000073282.14 | chr3:189808526:+ | ITPR2^ENSG00000123104.12 | chr12:26790227:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1108:17164:27623 | . | YES_LDAS | 0.0146 | GT | 1.8323 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr3--chr12]"] | chr3:189808526-chr12:26790227 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TOP3A--SMCR8 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TOP3A^ENSG00000177302.15 | chr17:18292645:- | SMCR8^ENSG00000176994.11 | chr17:18322617:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1280:46692:28492 | . | YES_LDAS | 0.0146 | GT | 1.6895 | AG | 1.7465 | ["INTRACHROMOSOMAL[chr17:0.00Mb]","LOCAL_INVERSION:-:+:[286]"] | chr17:18292645-chr17:18322617 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TNIP1--GTF2I | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | TNIP1^ENSG00000145901.16 | chr5:151032287:- | GTF2I^ENSG00000263001.7 | chr7:74756820:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1252:18005:28212 | . | YES_LDAS | 0.0073 | GT | 1.8256 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr5--chr7]"] | chr5:151032287-chr7:74756820 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TMEM259--VASH1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TMEM259^ENSG00000182087.14 | chr19:1014456:- | VASH1^ENSG00000071246.11 | chr14:76776049:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2347:11549:20449 | . | NO_LDAS | 0.0146 | GT | 1.4566 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr19--chr14]"] | chr19:1014456-chr14:76776049 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TMEM156--ATP8A1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TMEM156^ENSG00000121895.8 | chr4:38986336:- | ATP8A1^ENSG00000124406.16 | chr4:42507154:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1166:41264:7235 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.8062 | ["INTRACHROMOSOMAL[chr4:3.38Mb]"] | chr4:38986336-chr4:42507154 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TIMELESS--THBS3 | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | TIMELESS^ENSG00000111602.12 | chr12:56421727:- | THBS3^ENSG00000169231.13 | chr1:155198220:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1334:8896:16161 | . | NO_LDAS | 0.0073 | GT | 1.9656 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr12--chr1]"] | chr12:56421727-chr1:155198220 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TIAM1--USP16 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TIAM1^ENSG00000156299.13 | chr21:31164962:- | USP16^ENSG00000156256.15 | chr21:29052695:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1366:26030:13387 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.7819 | ["INTRACHROMOSOMAL[chr21:2.06Mb]"] | chr21:31164962-chr21:29052695 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| THOC6--TBC1D29P | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | THOC6^ENSG00000131652.14 | chr16:3026288:+ | TBC1D29P^ENSG00000266733.7 | chr17:30560570:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2493:43650:26671 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr16--chr17]"] | chr16:3026288-chr17:30560570 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TGM4--TGM1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TGM4^ENSG00000163810.12 | chr3:44901931:+ | TGM1^ENSG00000092295.12 | chr14:24258388:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1398:41466:16554 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9656 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr3--chr14]"] | chr3:44901931-chr14:24258388 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| TGFA--FAM107A | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TGFA^ENSG00000163235.16 | chr2:70453218:- | FAM107A^ENSG00000168309.18 | chr3:58565356:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1274:1607:23097 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr2--chr3]"] | chr2:70453218-chr3:58565356 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TENT5C--MYL9 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TENT5C^ENSG00000183508.5 | chr1:117627758:+ | MYL9^ENSG00000101335.10 | chr20:36548032:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2477:11857:20617 | . | NO_LDAS | 0.0146 | GT | 1.0389 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr1--chr20]"] | chr1:117627758-chr20:36548032 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TCF3--PPM1F | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TCF3^ENSG00000071564.17 | chr19:1652326:- | PPM1F^ENSG00000100034.14 | chr22:21922955:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1394:11557:12392 | . | NO_LDAS | 0.0146 | GC | 0.9056 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr19--chr22]"] | chr19:1652326-chr22:21922955 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TCAF2C--SLC19A1 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | TCAF2C^ENSG00000283528.2 | chr7:143644548:- | SLC19A1^ENSG00000173638.19 | chr21:45498416:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2388:16031:8342 | . | NO_LDAS | 0.0048 | GT | 1.7465 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr7--chr21]"] | chr7:143644548-chr21:45498416 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TCAF2--SLC19A1 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | TCAF2^ENSG00000170379.20 | chr7:143722789:+ | SLC19A1^ENSG00000173638.19 | chr21:45498416:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2388:16031:8342 | . | NO_LDAS | 0.0048 | GT | 1.7465 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr7--chr21]"] | chr7:143722789-chr21:45498416 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TBP--PKN1 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | TBP^ENSG00000112592.14 | chr6:170562024:+ | PKN1^ENSG00000123143.13 | chr19:14451968:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2495:1647:23280 | . | NO_LDAS | 0.0073 | GT | 1.5656 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr6--chr19]"] | chr6:170562024-chr19:14451968 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TBP--GUCD1 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | TBP^ENSG00000112592.14 | chr6:170562024:+ | GUCD1^ENSG00000138867.17 | chr22:24555053:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2495:1647:23280 | . | NO_LDAS | 0.0073 | GT | 1.5656 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr6--chr22]"] | chr6:170562024-chr22:24555053 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TBP--DHX29 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TBP^ENSG00000112592.14 | chr6:170562024:+ | DHX29^ENSG00000067248.10 | chr5:55283664:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1212:38004:6353 | . | NO_LDAS | 0.0146 | GT | 1.5656 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr6--chr5]"] | chr6:170562024-chr5:55283664 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TBCK--BANK1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TBCK^ENSG00000145348.17 | chr4:106095482:- | BANK1^ENSG00000153064.12 | chr4:101917993:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2315:21484:21430 | . | NO_LDAS | 0.0146 | GT | 1.7465 | AG | 1.7819 | ["INTRACHROMOSOMAL[chr4:3.97Mb]"] | chr4:106095482-chr4:101917993 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| TBC1D24--AC068389.1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | TBC1D24^ENSG00000162065.14 | chr16:2485289:+ | AC068389.1^ENSG00000228862.4 | chr8:60631506:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1187:13717:9716 | . | NO_LDAS | 0.0146 | GT | 1.053 | AG | 0.8366 | ["INTERCHROMOSOMAL[chr16--chr8]"] | chr16:2485289-chr8:60631506 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| TACC1--HLA-DPA1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | TACC1^ENSG00000147526.20 | chr8:38827375:+ | HLA-DPA1^ENSG00000231389.7 | chr6:33069886:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2420:22010:10122 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr8--chr6]"] | chr8:38827375-chr6:33069886 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| SYPL1--AL049844.2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SYPL1^ENSG00000008282.9 | chr7:106112152:- | AL049844.2^ENSG00000270890.1 | chr6:143858673:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1165:33053:10837 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr7--chr6]"] | chr7:106112152-chr6:143858673 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SYNGAP1--AGT | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SYNGAP1^ENSG00000197283.17 | chr6:33447933:+ | AGT^ENSG00000135744.9 | chr1:230694364:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1320:26718:9758 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr6--chr1]"] | chr6:33447933-chr1:230694364 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SYNE3--CLN8 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SYNE3^ENSG00000176438.12 | chr14:95444485:- | CLN8^ENSG00000182372.10 | chr8:1786219:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1291:25755:7614 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr14--chr8]"] | chr14:95444485-chr8:1786219 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SYNE2--CD207 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SYNE2^ENSG00000054654.19 | chr14:64024459:+ | CD207^ENSG00000116031.9 | chr2:70830974:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1428:42607:9029 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr14--chr2]"] | chr14:64024459-chr2:70830974 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SVIL--CES1P1 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | SVIL^ENSG00000197321.15 | chr10:29480563:- | CES1P1^ENSG00000228695.10 | chr16:55774839:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:23466:3060 | . | NO_LDAS | 0.0073 | GT | 1.9656 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr10--chr16]"] | chr10:29480563-chr16:55774839 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SV2A--POLR3E | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SV2A^ENSG00000159164.10 | chr1:149908191:- | POLR3E^ENSG00000058600.16 | chr16:22316601:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2166:45681:22453 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr1--chr16]"] | chr1:149908191-chr16:22316601 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SUN1--SMC6 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SUN1^ENSG00000164828.18 | chr7:843232:+ | SMC6^ENSG00000163029.16 | chr2:17670562:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1428:29145:16680 | . | NO_LDAS | 0.0146 | GT | 1.8256 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr7--chr2]"] | chr7:843232-chr2:17670562 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| STK25--TMEM175 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | STK25^ENSG00000115694.15 | chr2:241495177:- | TMEM175^ENSG00000127419.17 | chr4:947767:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2271:16217:10318 | . | YES_LDAS | 0.0146 | GT | 1.6895 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr2--chr4]"] | chr2:241495177-chr4:947767 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| STK17A--TPK1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | STK17A^ENSG00000164543.7 | chr7:43583449:+ | TPK1^ENSG00000196511.14 | chr7:144648879:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1124:51813:5778 | . | YES_LDAS | 0.0146 | GT | 1.6402 | AG | 1.7232 | ["INTRACHROMOSOMAL[chr7:100.80Mb]"] | chr7:43583449-chr7:144648879 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ST8SIA2--AP1G2 | 1 | 0 | 0.2 | 0.0 | INCL_NON_REF_SPLICE | ST8SIA2^ENSG00000140557.12 | chr15:92393910:+ | AP1G2^ENSG00000213983.12 | chr14:23567711:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1195:20238:14900 | . | NO_LDAS | 0.0029 | GC | 1.5058 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr15--chr14]"] | chr15:92393910-chr14:23567711 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SRP14--NMT2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SRP14^ENSG00000140319.11 | chr15:40039109:- | NMT2^ENSG00000152465.18 | chr10:15168603:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1425:22714:7221 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr15--chr10]"] | chr15:40039109-chr10:15168603 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SRCAP--TRIM29 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SRCAP^ENSG00000080603.17 | chr16:30698391:+ | TRIM29^ENSG00000137699.17 | chr11:120128495:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1375:18936:18501 | . | NO_LDAS | 0.0146 | GT | 1.5301 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr16--chr11]"] | chr16:30698391-chr11:120128495 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SPPL3--TPCN1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | SPPL3^ENSG00000157837.16 | chr12:120903845:- | TPCN1^ENSG00000186815.13 | chr12:113260368:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1312:25561:19917 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9219 | ["INTRACHROMOSOMAL[chr12:7.46Mb]"] | chr12:120903845-chr12:113260368 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| SPINT2--AC010642.2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | SPINT2^ENSG00000167642.13 | chr19:38264998:+ | AC010642.2^ENSG00000283103.3 | chr19:58315036:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2447:28571:1532 | . | YES_LDAS | 0.0146 | GT | 1.7819 | AG | 1.7465 | ["INTRACHROMOSOMAL[chr19:20.02Mb]"] | chr19:38264998-chr19:58315036 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| SPDYE16--CTLA4 | 1 | 0 | 0.17 | 0.0 | INCL_NON_REF_SPLICE | SPDYE16^ENSG00000185040.13 | chr7:76532607:- | CTLA4^ENSG00000163599.17 | chr2:203867979:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2232:25310:27245 | . | NO_LDAS | 0.0025 | GT | 0.6998 | AG | 1.9219 | ["INTERCHROMOSOMAL[chr7--chr2]"] | chr7:76532607-chr2:203867979 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SOBP--YWHAZ | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SOBP^ENSG00000112320.12 | chr6:107506427:+ | YWHAZ^ENSG00000164924.18 | chr8:100918879:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1272:34638:6605 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr6--chr8]"] | chr6:107506427-chr8:100918879 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| SNX1--HOXB-AS4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SNX1^ENSG00000028528.15 | chr15:64118244:+ | HOXB-AS4^ENSG00000242207.1 | chr17:48628813:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2293:41434:12070 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.3996 | ["INTERCHROMOSOMAL[chr15--chr17]"] | chr15:64118244-chr17:48628813 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SMARCC1--IFI44L | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | SMARCC1^ENSG00000173473.11 | chr3:47610314:- | IFI44L^ENSG00000137959.17 | chr1:78629631:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1467:22439:23280 | . | NO_LDAS | 0.0073 | GC | 1.7465 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr3--chr1]"] | chr3:47610314-chr1:78629631 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SLFN5--TRAPPC10 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | SLFN5^ENSG00000166750.10 | chr17:35261096:+ | TRAPPC10^ENSG00000160218.13 | chr21:44082788:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1131:40010:26194 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr17--chr21]"] | chr17:35261096-chr21:44082788 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| SLC9A9--FAF1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | SLC9A9^ENSG00000181804.15 | chr3:143467037:- | FAF1^ENSG00000185104.20 | chr1:50705891:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1455:45624:7193 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr3--chr1]"] | chr3:143467037-chr1:50705891 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| SLC7A6OS--PDE6A | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | SLC7A6OS^ENSG00000103061.13 | chr16:68299190:- | PDE6A^ENSG00000132915.11 | chr5:149867234:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1377:26330:6563 | . | NO_LDAS | 0.0073 | GT | 1.7232 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr16--chr5]"] | chr16:68299190-chr5:149867234 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SLC6A11--ARCN1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SLC6A11^ENSG00000132164.10 | chr3:10940211:+ | ARCN1^ENSG00000095139.14 | chr11:118597707:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1155:7998:17184 | . | NO_LDAS | 0.0146 | GT | 1.371 | AG | 1.5301 | ["INTERCHROMOSOMAL[chr3--chr11]"] | chr3:10940211-chr11:118597707 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SLC31A1--RACK1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SLC31A1^ENSG00000136868.11 | chr9:113262180:+ | RACK1^ENSG00000204628.12 | chr5:181237042:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2249:16395:1939 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr9--chr5]"] | chr9:113262180-chr5:181237042 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SLC25A45--VPS13C | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | SLC25A45^ENSG00000162241.12 | chr11:65375323:- | VPS13C^ENSG00000129003.19 | chr15:61910305:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1339:7553:6773 | . | NO_LDAS | 0.0048 | GT | 1.9086 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr11--chr15]"] | chr11:65375323-chr15:61910305 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SLC24A3--RBMS3 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | SLC24A3^ENSG00000185052.13 | chr20:19281087:+ | RBMS3^ENSG00000144642.22 | chr3:29587114:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:46158:11817 | . | YES_LDAS | 0.0146 | GT | 1.7819 | AG | 1.3996 | ["INTERCHROMOSOMAL[chr20--chr3]"] | chr20:19281087-chr3:29587114 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| SLC17A9--CRELD1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SLC17A9^ENSG00000101194.18 | chr20:62968488:+ | CRELD1^ENSG00000163703.19 | chr3:9940850:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2342:41199:29151 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr20--chr3]"] | chr20:62968488-chr3:9940850 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SLC16A2--ANKRD17 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SLC16A2^ENSG00000147100.11 | chrX:74531705:+ | ANKRD17^ENSG00000132466.19 | chr4:73092245:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2149:2391:16161 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.6729 | ["INTERCHROMOSOMAL[chrX--chr4]"] | chrX:74531705-chr4:73092245 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SLBP--SMARCAD1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | SLBP^ENSG00000163950.13 | chr4:1703596:- | SMARCAD1^ENSG00000163104.18 | chr4:94226119:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2222:15845:19594 | . | NO_LDAS | 0.0146 | GT | 1.6402 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr4:92.50Mb]"] | chr4:1703596-chr4:94226119 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| SIN3A--MAGEB10 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SIN3A^ENSG00000169375.16 | chr15:75412763:- | MAGEB10^ENSG00000177689.10 | chrX:27822333:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2157:1809:14116 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr15--chrX]"] | chr15:75412763-chrX:27822333 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SH3BP5L--PLAC8 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SH3BP5L^ENSG00000175137.11 | chr1:248811935:- | PLAC8^ENSG00000145287.11 | chr4:83105020:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2413:41596:16806 | . | NO_LDAS | 0.0146 | GT | 1.4295 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr1--chr4]"] | chr1:248811935-chr4:83105020 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SH3BP2--TLE2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SH3BP2^ENSG00000087266.17 | chr4:2829910:+ | TLE2^ENSG00000065717.15 | chr19:3009596:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1105:11460:28086 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.3753 | ["INTERCHROMOSOMAL[chr4--chr19]"] | chr4:2829910-chr19:3009596 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SFN--TMUB1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SFN^ENSG00000175793.12 | chr1:26863621:+ | TMUB1^ENSG00000164897.14 | chr7:151081841:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1198:8637:12686 | . | YES_LDAS | 0.0146 | GT | 1.7056 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr1--chr7]"] | chr1:26863621-chr7:151081841 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SETD2--TMEM161A | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SETD2^ENSG00000181555.21 | chr3:47164012:- | TMEM161A^ENSG00000064545.15 | chr19:19130271:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2239:50478:1084 | . | NO_LDAS | 0.0146 | GT | 0.971 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr3--chr19]"] | chr3:47164012-chr19:19130271 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SETD2--SRRT | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SETD2^ENSG00000181555.21 | chr3:47164012:- | SRRT^ENSG00000087087.20 | chr7:100886857:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2184:5660:17759 | . | NO_LDAS | 0.0146 | GT | 0.971 | AG | 1.4566 | ["INTERCHROMOSOMAL[chr3--chr7]"] | chr3:47164012-chr7:100886857 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SERBP1--NCL | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SERBP1^ENSG00000142864.15 | chr1:67425192:- | NCL^ENSG00000115053.17 | chr2:231461963:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1310:1882:24695 | . | YES_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr1--chr2]"] | chr1:67425192-chr2:231461963 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SEMA4D--ABCC1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | SEMA4D^ENSG00000187764.12 | chr9:89497919:- | ABCC1^ENSG00000103222.20 | chr16:16007816:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1463:49411:11761 | . | YES_LDAS | 0.0146 | GT | 1.6895 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr9--chr16]"] | chr9:89497919-chr16:16007816 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| SCPEP1--MIR4426 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | SCPEP1^ENSG00000121064.13 | chr17:56997055:+ | MIR4426^ENSG00000283795.1 | chr1:192716372:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1253:2707:10963 | . | YES_LDAS | 0.0073 | GT | 1.7819 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr17--chr1]"] | chr17:56997055-chr1:192716372 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SCN1B--ZSWIM1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SCN1B^ENSG00000105711.13 | chr19:35038129:+ | ZSWIM1^ENSG00000168612.5 | chr20:45883608:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1204:9624:22551 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr19--chr20]"] | chr19:35038129-chr20:45883608 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SCN1A--CUL4B | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SCN1A^ENSG00000144285.22 | chr2:165989139:- | CUL4B^ENSG00000158290.19 | chrX:120560625:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1380:22123:13625 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.5628 | ["INTERCHROMOSOMAL[chr2--chrX]"] | chr2:165989139-chrX:120560625 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SCLY--ARID5B | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | SCLY^ENSG00000132330.18 | chr2:238098949:+ | ARID5B^ENSG00000150347.17 | chr10:62091112:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2107:18960:24120 | . | NO_LDAS | 0.0073 | GT | 1.7465 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr2--chr10]"] | chr2:238098949-chr10:62091112 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SCEL--LMO7 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | SCEL^ENSG00000136155.17 | chr13:77535824:+ | LMO7^ENSG00000136153.20 | chr13:75795401:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2116:13095:13065 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.6895 | ["DEEPEST2019","INTRACHROMOSOMAL[chr13:1.68Mb]"] | chr13:77535824-chr13:75795401 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| SCAMP1-AS1--NDEL1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SCAMP1-AS1^ENSG00000245556.3 | chr5:78356553:- | NDEL1^ENSG00000166579.16 | chr17:8466189:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1116:25116:13989 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr5--chr17]"] | chr5:78356553-chr17:8466189 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SAMD8--AC003681.1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | SAMD8^ENSG00000156671.15 | chr10:75151106:+ | AC003681.1^ENSG00000279159.1 | chr22:29990230:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1389:4018:28002 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr10--chr22]"] | chr10:75151106-chr22:29990230 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| SAMD5--SASH1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | SAMD5^ENSG00000203727.4 | chr6:147509387:+ | SASH1^ENSG00000111961.18 | chr6:148390134:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2238:6186:27721 | . | YES_LDAS | 0.0146 | GT | 1.8295 | AG | 1.9219 | ["HGNC_GENEFAM","INTRACHROMOSOMAL[chr6:0.70Mb]"] | chr6:147509387-chr6:148390134 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| RSRP1--DPP9 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RSRP1^ENSG00000117616.18 | chr1:25245150:- | DPP9^ENSG00000142002.18 | chr19:4694823:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2496:2391:24344 | . | YES_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr1--chr19]"] | chr1:25245150-chr19:4694823 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RPSA--FAM149A | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RPSA^ENSG00000168028.14 | chr3:39410999:+ | FAM149A^ENSG00000109794.13 | chr4:186158377:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2433:35900:5792 | . | NO_LDAS | 0.0146 | GT | 1.6895 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr3--chr4]"] | chr3:39410999-chr4:186158377 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RPS23P8--NASP | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RPS23P8^ENSG00000230629.2 | chrX:70963233:+ | NASP^ENSG00000132780.17 | chr1:45612878:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1473:51223:16778 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.8295 | ["INTERCHROMOSOMAL[chrX--chr1]"] | chrX:70963233-chr1:45612878 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RPN1--L3MBTL4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RPN1^ENSG00000163902.12 | chr3:128650534:- | L3MBTL4^ENSG00000154655.16 | chr18:6030994:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1397:28506:7446 | . | NO_LDAS | 0.0146 | GT | 1.7232 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr3--chr18]"] | chr3:128650534-chr18:6030994 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RPL39--FLNA | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RPL39^ENSG00000198918.8 | chrX:119786552:- | FLNA^ENSG00000196924.19 | chrX:154367951:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1234:47784:5218 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8062 | ["INTRACHROMOSOMAL[chrX:34.56Mb]"] | chrX:119786552-chrX:154367951 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RPL32P3--RPL32P25 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RPL32P3^ENSG00000251474.6 | chr3:129397040:- | RPL32P25^ENSG00000242993.1 | chr11:95963312:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1365:41013:13135 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr3--chr11]"] | chr3:129397040-chr11:95963312 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RPL26--HBG1 | 1 | 0 | 0.12 | 0.0 | INCL_NON_REF_SPLICE | RPL26^ENSG00000161970.15 | chr17:8379796:- | HBG1^ENSG00000213934.9 | chr11:5249750:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1278:20950:9604 | . | NO_LDAS | 0.0018 | GT | 1.8323 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr17--chr11]"] | chr17:8379796-chr11:5249750 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RPL22P10--RPL22P19 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | RPL22P10^ENSG00000213295.3 | chr2:106247524:+ | RPL22P19^ENSG00000241129.3 | chr12:124935706:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2390:13232:4979 | . | YES_LDAS | 0.0073 | GT | 1.4716 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr2--chr12]"] | chr2:106247524-chr12:124935706 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RPA2--GEMIN7 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RPA2^ENSG00000117748.10 | chr1:27894012:- | GEMIN7^ENSG00000142252.11 | chr19:45090107:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2457:19316:16217 | . | YES_LDAS | 0.0146 | GT | 1.8256 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr1--chr19]"] | chr1:27894012-chr19:45090107 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RNU6-13P--NACA3P | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RNU6-13P^ENSG00000206975.1 | chr8:56917190:+ | NACA3P^ENSG00000121089.4 | chr4:164943327:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2406:8063:14270 | . | YES_LDAS | 0.0146 | GT | 1.7232 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr8--chr4]"] | chr8:56917190-chr4:164943327 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RNU1-83P--BICD1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RNU1-83P^ENSG00000200296.1 | chr12:62850846:- | BICD1^ENSG00000151746.15 | chr12:32216340:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2444:29695:6955 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9086 | ["INTRACHROMOSOMAL[chr12:30.47Mb]"] | chr12:62850846-chr12:32216340 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RNFT1--GPM6A | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RNFT1^ENSG00000189050.16 | chr17:59964608:- | GPM6A^ENSG00000150625.16 | chr4:175906770:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1426:25213:11635 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr17--chr4]"] | chr17:59964608-chr4:175906770 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RNF40--ANO9 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | RNF40^ENSG00000103549.22 | chr16:30768015:+ | ANO9^ENSG00000185101.13 | chr11:420053:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1133:27398:13513 | . | NO_LDAS | 0.0073 | GT | 1.8892 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr16--chr11]"] | chr16:30768015-chr11:420053 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RNF165--RNH1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RNF165^ENSG00000141622.14 | chr18:46433394:+ | RNH1^ENSG00000023191.17 | chr11:499923:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2275:7488:4671 | . | NO_LDAS | 0.0146 | GT | 1.7232 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr18--chr11]"] | chr18:46433394-chr11:499923 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RNF145--PIK3AP1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RNF145^ENSG00000145860.12 | chr5:159203434:- | PIK3AP1^ENSG00000155629.15 | chr10:96595634:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1167:7496:7123 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr5--chr10]"] | chr5:159203434-chr10:96595634 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RNF144A--CBLB | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RNF144A^ENSG00000151692.15 | chr2:6941147:+ | CBLB^ENSG00000114423.23 | chr3:105704173:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:15700:1575 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9329 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr2--chr3]"] | chr2:6941147-chr3:105704173 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| RN7SL417P--RN7SL752P | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RN7SL417P^ENSG00000244056.3 | chr15:84394176:+ | RN7SL752P^ENSG00000239437.3 | chr3:129591475:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2316:23345:4167 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9656 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr15--chr3]"] | chr15:84394176-chr3:129591475 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| RIOK1--SNX33 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RIOK1^ENSG00000124784.9 | chr6:7393276:+ | SNX33^ENSG00000173548.9 | chr15:75649436:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2337:9373:6423 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr6--chr15]"] | chr6:7393276-chr15:75649436 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RIC1--SETD5 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RIC1^ENSG00000107036.12 | chr9:5629224:+ | SETD5^ENSG00000168137.18 | chr3:9397650:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2249:2456:10668 | . | YES_LDAS | 0.0146 | GT | 1.5329 | AG | 1.231 | ["INTERCHROMOSOMAL[chr9--chr3]"] | chr9:5629224-chr3:9397650 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RHCG--RHBG | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RHCG^ENSG00000140519.14 | chr15:89496361:- | RHBG^ENSG00000132677.13 | chr1:156377301:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1142:50656:15040 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.9086 | ["GTEx_recurrent_StarF2019","HGNC_GENEFAM","INTERCHROMOSOMAL[chr15--chr1]"] | chr15:89496361-chr1:156377301 | False | 0 | Excluded annotation pattern: GTEx_recurrent_StarF2019 | FAIL | 1 | |
| RHBDD1--OSBPL3 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RHBDD1^ENSG00000144468.17 | chr2:226914351:+ | OSBPL3^ENSG00000070882.13 | chr7:24834736:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2476:16314:7768 | . | YES_LDAS | 0.0146 | GT | 1.8323 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr2--chr7]"] | chr2:226914351-chr7:24834736 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RFX3--HCN2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RFX3^ENSG00000080298.15 | chr9:3525983:- | HCN2^ENSG00000099822.3 | chr19:616797:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1274:41887:29473 | . | NO_LDAS | 0.0146 | GT | 0.6998 | AG | 1.7056 | ["INTERCHROMOSOMAL[chr9--chr19]"] | chr9:3525983-chr19:616797 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RFT1--CACNA1D | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RFT1^ENSG00000163933.10 | chr3:53130338:- | CACNA1D^ENSG00000157388.19 | chr3:53702641:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1241:27891:21374 | . | YES_LDAS | 0.0146 | GT | 1.8062 | AG | 1.8295 | ["INTRACHROMOSOMAL[chr3:0.20Mb]"] | chr3:53130338-chr3:53702641 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RFESD--PALLD | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RFESD^ENSG00000175449.14 | chr5:95646757:+ | PALLD^ENSG00000129116.19 | chr4:168877982:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1311:5077:3802 | . | NO_LDAS | 0.0146 | GT | 1.4295 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr5--chr4]"] | chr5:95646757-chr4:168877982 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RELCH--MED13L | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RELCH^ENSG00000134444.15 | chr18:62188031:+ | MED13L^ENSG00000123066.9 | chr12:116096752:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1162:31831:23013 | . | YES_LDAS | 0.0146 | GT | 1.7465 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr18--chr12]"] | chr18:62188031-chr12:116096752 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RBMS2--DEAF1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RBMS2^ENSG00000076067.13 | chr12:56569990:+ | DEAF1^ENSG00000177030.17 | chr11:688460:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1455:15044:15881 | . | YES_LDAS | 0.0146 | GT | 1.7819 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr12--chr11]"] | chr12:56569990-chr11:688460 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RBM39--CCDC136 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RBM39^ENSG00000131051.24 | chr20:35729312:- | CCDC136^ENSG00000128596.17 | chr7:128815701:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1161:49532:13093 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.1589 | ["INTERCHROMOSOMAL[chr20--chr7]"] | chr20:35729312-chr7:128815701 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RBM33--IPO5 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RBM33^ENSG00000184863.11 | chr7:155644919:+ | IPO5^ENSG00000065150.21 | chr13:97997603:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1103:42534:21374 | . | NO_LDAS | 0.0146 | GT | 1.4566 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr7--chr13]"] | chr7:155644919-chr13:97997603 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RASSF1--AL049629.2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RASSF1^ENSG00000068028.17 | chr3:50330152:- | AL049629.2^ENSG00000284969.1 | chr11:33710178:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1216:3014:25704 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr3--chr11]"] | chr3:50330152-chr11:33710178 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RARG--PDE1B | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RARG^ENSG00000172819.17 | chr12:53215724:- | PDE1B^ENSG00000123360.12 | chr12:54549603:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1290:21856:4391 | . | NO_LDAS | 0.0146 | GT | 1.371 | AG | 0.971 | ["INTRACHROMOSOMAL[chr12:1.32Mb]"] | chr12:53215724-chr12:54549603 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RAPGEF1--ZNF609 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RAPGEF1^ENSG00000107263.18 | chr9:131739770:- | ZNF609^ENSG00000180357.9 | chr15:64622827:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2177:21565:5008 | . | YES_LDAS | 0.0146 | GT | 1.6895 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr9--chr15]"] | chr9:131739770-chr15:64622827 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RAP1A--KDM1A | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RAP1A^ENSG00000116473.14 | chr1:111619934:+ | KDM1A^ENSG00000004487.17 | chr1:23050387:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2178:37931:24106 | . | NO_LDAS | 0.0146 | GT | 1.231 | AG | 1.6049 | ["INTRACHROMOSOMAL[chr1:88.46Mb]"] | chr1:111619934-chr1:23050387 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RALGAPB--NTRK2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RALGAPB^ENSG00000170471.15 | chr20:38576933:+ | NTRK2^ENSG00000148053.17 | chr9:84811415:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2196:20513:2934 | . | NO_LDAS | 0.0146 | GT | 1.5329 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr20--chr9]"] | chr20:38576933-chr9:84811415 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RALGAPA1--HNRNPC | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RALGAPA1^ENSG00000174373.17 | chr14:35634574:- | HNRNPC^ENSG00000092199.18 | chr14:21234229:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2274:46450:28184 | . | YES_LDAS | 0.0146 | GT | 1.7465 | AG | 1.6402 | ["INTRACHROMOSOMAL[chr14:14.27Mb]"] | chr14:35634574-chr14:21234229 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RAI1--NAPSB | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | RAI1^ENSG00000108557.19 | chr17:17810289:+ | NAPSB^ENSG00000131401.11 | chr19:50337282:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2249:1065:1336 | . | NO_LDAS | 0.0048 | GC | 1.6895 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr17--chr19]"] | chr17:17810289-chr19:50337282 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RAD51B--CNTRL | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | RAD51B^ENSG00000182185.18 | chr14:67887204:+ | CNTRL^ENSG00000119397.18 | chr9:121088296:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2196:13572:16918 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr14--chr9]"] | chr14:67887204-chr9:121088296 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RAC2--ARID5B | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | RAC2^ENSG00000128340.15 | chr22:37225526:- | ARID5B^ENSG00000150347.17 | chr10:62091112:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2107:18960:24120 | . | NO_LDAS | 0.0073 | GT | 1.7465 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr22--chr10]"] | chr22:37225526-chr10:62091112 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RABL6--FAM126B | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RABL6^ENSG00000196642.19 | chr9:136832349:+ | FAM126B^ENSG00000155744.9 | chr2:200977252:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1377:43626:25816 | . | NO_LDAS | 0.0146 | AT | 1.7819 | AC | 1.7232 | ["INTERCHROMOSOMAL[chr9--chr2]"] | chr9:136832349-chr2:200977252 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RAB7A--RGP1 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | RAB7A^ENSG00000075785.14 | chr3:128813429:+ | RGP1^ENSG00000107185.10 | chr9:35750294:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:14680:7432 | . | NO_LDAS | 0.0073 | GT | 1.7232 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr3--chr9]"] | chr3:128813429-chr9:35750294 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RAB7A--PIGS | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | RAB7A^ENSG00000075785.14 | chr3:128813429:+ | PIGS^ENSG00000087111.21 | chr17:28556220:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1139:14680:7432 | . | NO_LDAS | 0.0073 | GT | 1.7232 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr3--chr17]"] | chr3:128813429-chr17:28556220 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| RAB33B--RAB8B | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RAB33B^ENSG00000172007.7 | chr4:139454444:+ | RAB8B^ENSG00000166128.13 | chr15:63244806:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2178:43497:19790 | . | NO_LDAS | 0.0146 | GT | 1.7465 | AG | 1.9086 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr4--chr15]"] | chr4:139454444-chr15:63244806 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| RAB29--NOMO1 | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | RAB29^ENSG00000117280.13 | chr1:205774833:- | NOMO1^ENSG00000103512.15 | chr16:14863013:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1172:17714:5092 | . | YES_LDAS | 0.0073 | GT | 1.8295 | AG | 1.7056 | ["INTERCHROMOSOMAL[chr1--chr16]"] | chr1:205774833-chr16:14863013 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| RAB11B--RN7SL634P | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | RAB11B^ENSG00000185236.12 | chr19:8402873:+ | RN7SL634P^ENSG00000242894.3 | chr14:104013715:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1402:2076:29711 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr19--chr14]"] | chr19:8402873-chr14:104013715 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PTK2B--TGFBR2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PTK2B^ENSG00000120899.18 | chr8:27454611:+ | TGFBR2^ENSG00000163513.19 | chr3:30688468:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2449:29574:26390 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr8--chr3]"] | chr8:27454611-chr3:30688468 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PTENP1-AS--PGR | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | PTENP1-AS^ENSG00000281128.2 | chr9:33677038:+ | PGR^ENSG00000082175.15 | chr11:101129236:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2334:26306:29557 | . | NO_LDAS | 0.0073 | GT | 1.231 | AG | 1.053 | ["INTERCHROMOSOMAL[chr9--chr11]"] | chr9:33677038-chr11:101129236 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PTBP3--MBP | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PTBP3^ENSG00000119314.16 | chr9:112297832:- | MBP^ENSG00000197971.16 | chr18:77105286:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1123:34031:17717 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr9--chr18]"] | chr9:112297832-chr18:77105286 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PSMG2--CREB3L2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PSMG2^ENSG00000128789.21 | chr18:12703028:+ | CREB3L2^ENSG00000182158.15 | chr7:138001690:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1340:20367:11033 | . | NO_LDAS | 0.0146 | GT | 1.5628 | AG | 1.371 | ["INTERCHROMOSOMAL[chr18--chr7]"] | chr18:12703028-chr7:138001690 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PRSS36--SPRR2A | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | PRSS36^ENSG00000178226.11 | chr16:31140564:- | SPRR2A^ENSG00000241794.2 | chr1:153056591:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1148:21079:17703 | . | NO_LDAS | 0.0073 | GT | 1.7232 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr16--chr1]"] | chr16:31140564-chr1:153056591 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PRSS23--KDM3B | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PRSS23^ENSG00000150687.12 | chr11:86807965:+ | KDM3B^ENSG00000120733.14 | chr5:138393171:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2101:36863:3284 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr11--chr5]"] | chr11:86807965-chr5:138393171 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PRRC2C--FN3K | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PRRC2C^ENSG00000117523.16 | chr1:171568339:+ | FN3K^ENSG00000167363.14 | chr17:82750756:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:20610:16133 | . | NO_LDAS | 0.0146 | GT | 1.6895 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr1--chr17]"] | chr1:171568339-chr17:82750756 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PRRC2A--CRAMP1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PRRC2A^ENSG00000204469.13 | chr6:31637136:+ | CRAMP1^ENSG00000007545.16 | chr16:1676731:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1436:32915:1154 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr6--chr16]"] | chr6:31637136-chr16:1676731 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PRKCZ--PANK4 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PRKCZ^ENSG00000067606.17 | chr1:2059591:+ | PANK4^ENSG00000157881.16 | chr1:2521800:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2136:11630:2289 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr1:0.32Mb]"] | chr1:2059591-chr1:2521800 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PPP6R3--UBE4B | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PPP6R3^ENSG00000110075.15 | chr11:68460827:+ | UBE4B^ENSG00000130939.20 | chr1:10095461:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2444:47922:16526 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr11--chr1]"] | chr11:68460827-chr1:10095461 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PPP6C--RPL35 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PPP6C^ENSG00000119414.12 | chr9:125153533:- | RPL35^ENSG00000136942.15 | chr9:124860264:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1461:37041:1266 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.9086 | ["INTRACHROMOSOMAL[chr9:0.28Mb]"] | chr9:125153533-chr9:124860264 | True | read_through|ribosomal genes|RPL35 | 0 | Blacklisted | FAIL | 1 |
| PPP3CA--PVT1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PPP3CA^ENSG00000138814.17 | chr4:101195916:- | PVT1^ENSG00000249859.12 | chr8:127989162:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2130:17156:24695 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr4--chr8]"] | chr4:101195916-chr8:127989162 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PPM1G--PRPF6 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PPM1G^ENSG00000115241.11 | chr2:27409303:- | PRPF6^ENSG00000101161.8 | chr20:64016723:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1144:5296:5274 | . | YES_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr2--chr20]"] | chr2:27409303-chr20:64016723 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| POTEKP--SLFNL1 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | POTEKP^ENSG00000204434.6 | chr2:131626421:+ | SLFNL1^ENSG00000171790.15 | chr1:41020321:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1158:45770:12378 | . | NO_LDAS | 0.0048 | GT | 1.9899 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr2--chr1]"] | chr2:131626421-chr1:41020321 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PNPT1--TRIM22 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PNPT1^ENSG00000138035.15 | chr2:55636312:- | TRIM22^ENSG00000132274.16 | chr11:5698315:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1123:23814:23980 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr2--chr11]"] | chr2:55636312-chr11:5698315 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PNN--SRXN1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PNN^ENSG00000100941.9 | chr14:39181594:+ | SRXN1^ENSG00000271303.2 | chr20:647530:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2116:43416:12168 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.4295 | ["INTERCHROMOSOMAL[chr14--chr20]"] | chr14:39181594-chr20:647530 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PLEKHA8--HERC2 | 1 | 0 | 0.25 | 0.0 | ONLY_REF_SPLICE | PLEKHA8^ENSG00000106086.20 | chr7:30028802:+ | HERC2^ENSG00000128731.18 | chr15:28299516:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1127:23862:16357 | . | YES_LDAS | 0.0037 | GT | 1.9656 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr7--chr15]"] | chr7:30028802-chr15:28299516 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PLAG1--RUFY1 | 1 | 0 | 0.25 | 0.0 | INCL_NON_REF_SPLICE | PLAG1^ENSG00000181690.8 | chr8:56167307:- | RUFY1^ENSG00000176783.15 | chr5:179598805:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1326:20853:11173 | . | NO_LDAS | 0.0037 | GT | 1.9086 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr8--chr5]"] | chr8:56167307-chr5:179598805 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PKD1--TAF1C | 1 | 0 | 0.14 | 0.0 | ONLY_REF_SPLICE | PKD1^ENSG00000008710.20 | chr16:2118676:- | TAF1C^ENSG00000103168.17 | chr16:84184989:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2365:30423:5274 | . | YES_LDAS | 0.002 | GT | 1.7968 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr16:82.04Mb]"] | chr16:2118676-chr16:84184989 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PKD1--CTSB | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PKD1^ENSG00000008710.20 | chr16:2091018:- | CTSB^ENSG00000164733.22 | chr8:11847875:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2201:43157:22453 | . | NO_LDAS | 0.0146 | GT | 1.6895 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr16--chr8]"] | chr16:2091018-chr8:11847875 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| PIP4K2A--DOCK8 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PIP4K2A^ENSG00000150867.14 | chr10:22714183:- | DOCK8^ENSG00000107099.16 | chr9:325671:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1208:50689:4895 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr10--chr9]"] | chr10:22714183-chr9:325671 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PIP4K2A--ATRNL1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PIP4K2A^ENSG00000150867.14 | chr10:22714183:- | ATRNL1^ENSG00000107518.18 | chr10:115426250:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2252:16015:22719 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr10:92.38Mb]"] | chr10:22714183-chr10:115426250 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PIKFYVE--IWS1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PIKFYVE^ENSG00000115020.17 | chr2:208276830:+ | IWS1^ENSG00000163166.15 | chr2:127505752:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1330:42502:11789 | . | YES_LDAS | 0.0146 | GT | 1.4295 | AG | 1.7465 | ["INTRACHROMOSOMAL[chr2:80.74Mb]"] | chr2:208276830-chr2:127505752 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PIEZO1--NUPR1 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | PIEZO1^ENSG00000103335.22 | chr16:88727159:- | NUPR1^ENSG00000176046.9 | chr16:28538868:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1189:22908:21878 | . | NO_LDAS | 0.0048 | GT | 1.7968 | AG | 1.3996 | ["INTRACHROMOSOMAL[chr16:60.18Mb]"] | chr16:88727159-chr16:28538868 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PHF3--PNMA8A | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PHF3^ENSG00000118482.12 | chr6:63680161:+ | PNMA8A^ENSG00000182013.18 | chr19:46468527:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1140:49419:1911 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.4716 | ["INTERCHROMOSOMAL[chr6--chr19]"] | chr6:63680161-chr19:46468527 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PHF3--PAK1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PHF3^ENSG00000118482.12 | chr6:63636090:+ | PAK1^ENSG00000149269.10 | chr11:77473682:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2375:5166:17464 | . | NO_LDAS | 0.0146 | GC | 1.5058 | AG | 0.971 | ["INTERCHROMOSOMAL[chr6--chr11]"] | chr6:63636090-chr11:77473682 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PHF12--SLC12A5 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PHF12^ENSG00000109118.14 | chr17:28950065:- | SLC12A5^ENSG00000124140.14 | chr20:46038224:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1301:26225:23756 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr17--chr20]"] | chr17:28950065-chr20:46038224 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PHETA1--RDH16 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PHETA1^ENSG00000198324.13 | chr12:111365560:- | RDH16^ENSG00000139547.8 | chr12:56954924:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2131:5361:2583 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.5329 | ["INTRACHROMOSOMAL[chr12:54.40Mb]"] | chr12:111365560-chr12:56954924 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PFN1--GDF9 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PFN1^ENSG00000108518.8 | chr17:4948263:- | GDF9^ENSG00000164404.8 | chr5:132861865:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1124:41126:12854 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr17--chr5]"] | chr17:4948263-chr5:132861865 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PFKFB3--ENTPD1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PFKFB3^ENSG00000170525.21 | chr10:6226365:+ | ENTPD1^ENSG00000138185.20 | chr10:95823237:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2453:27786:16287 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr10:89.46Mb]"] | chr10:6226365-chr10:95823237 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PEPD--CCSER2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PEPD^ENSG00000124299.15 | chr19:33462995:- | CCSER2^ENSG00000107771.17 | chr10:84513449:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:7998:12084 | . | YES_LDAS | 0.0146 | GT | 1.5656 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr19--chr10]"] | chr19:33462995-chr10:84513449 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PDLIM7--STARD13 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PDLIM7^ENSG00000196923.14 | chr5:177490870:- | STARD13^ENSG00000133121.21 | chr13:33285630:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2254:33344:18375 | . | YES_LDAS | 0.0146 | GT | 1.8295 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr5--chr13]"] | chr5:177490870-chr13:33285630 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PDLIM7--GRK6 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PDLIM7^ENSG00000196923.14 | chr5:177492405:- | GRK6^ENSG00000198055.11 | chr5:177441737:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2198:49888:14186 | . | NO_LDAS | 0.0146 | GT | 1.5301 | AG | 1.9329 | ["INTRACHROMOSOMAL[chr5:0.04Mb]","LOCAL_INVERSION:-:+:[40493]"] | chr5:177492405-chr5:177441737 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PDE4DIP--NCAPD3 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PDE4DIP^ENSG00000178104.19 | chr1:149032049:+ | NCAPD3^ENSG00000151503.13 | chr11:134204971:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1181:13305:23209 | . | YES_LDAS | 0.0146 | GT | 1.3383 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr1--chr11]"] | chr1:149032049-chr11:134204971 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PDE4DIP--GRIP2 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | PDE4DIP^ENSG00000178104.19 | chr1:148966644:+ | GRIP2^ENSG00000144596.13 | chr3:14556044:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1373:37276:5792 | . | NO_LDAS | 0.0073 | GT | 1.7968 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr1--chr3]"] | chr1:148966644-chr3:14556044 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PCNX1--TATDN2 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | PCNX1^ENSG00000100731.16 | chr14:70995791:+ | TATDN2^ENSG00000157014.11 | chr3:10248400:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2438:45139:19076 | . | NO_LDAS | 0.0073 | GT | 1.9086 | AG | 1.371 | ["INTERCHROMOSOMAL[chr14--chr3]"] | chr14:70995791-chr3:10248400 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PCNT--PHC2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PCNT^ENSG00000160299.17 | chr21:46432181:+ | PHC2^ENSG00000134686.18 | chr1:33430995:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2351:47736:29627 | . | NO_LDAS | 0.0146 | GT | 1.7465 | AG | 1.4566 | ["INTERCHROMOSOMAL[chr21--chr1]"] | chr21:46432181-chr1:33430995 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PCED1B--FCHSD2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PCED1B^ENSG00000179715.13 | chr12:47216689:+ | FCHSD2^ENSG00000137478.15 | chr11:72840959:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1467:20181:3256 | . | YES_LDAS | 0.0146 | GT | 1.8323 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr12--chr11]"] | chr12:47216689-chr11:72840959 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PCDH11X--TMEM249 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PCDH11X^ENSG00000102290.22 | chrX:92620494:+ | TMEM249^ENSG00000261587.2 | chr8:144354623:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2495:19809:1855 | . | NO_LDAS | 0.0146 | GT | 0.6998 | AG | 1.7819 | ["INTERCHROMOSOMAL[chrX--chr8]"] | chrX:92620494-chr8:144354623 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PAX5--EBLN3P | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | PAX5^ENSG00000196092.14 | chr9:36966549:- | EBLN3P^ENSG00000281649.2 | chr9:37086668:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1190:29355:2864 | . | NO_LDAS | 0.0146 | GT | 1.8256 | AG | 1.9086 | ["INTRACHROMOSOMAL[chr9:0.05Mb]","LOCAL_INVERSION:-:+:[45377]"] | chr9:36966549-chr9:37086668 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| PAX5--AL137026.3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PAX5^ENSG00000196092.14 | chr9:36882004:- | AL137026.3^ENSG00000287901.1 | chr10:44310145:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1412:36960:11075 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr9--chr10]"] | chr9:36882004-chr10:44310145 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PARP9--MTMR2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PARP9^ENSG00000138496.16 | chr3:122555282:- | MTMR2^ENSG00000087053.20 | chr11:95830556:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2277:42032:1420 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr3--chr11]"] | chr3:122555282-chr11:95830556 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PARP10--FLII | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PARP10^ENSG00000178685.14 | chr8:143983646:- | FLII^ENSG00000177731.16 | chr17:18246725:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1107:2375:4895 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.5219 | ["INTERCHROMOSOMAL[chr8--chr17]"] | chr8:143983646-chr17:18246725 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PARD3B--SMARCE1P6 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PARD3B^ENSG00000116117.18 | chr2:205193320:+ | SMARCE1P6^ENSG00000214465.3 | chr2:26149694:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1254:9341:25872 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.7819 | ["INTRACHROMOSOMAL[chr2:178.39Mb]"] | chr2:205193320-chr2:26149694 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PABPN1P2--TAF5L | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | PABPN1P2^ENSG00000255875.2 | chr19:52809847:+ | TAF5L^ENSG00000135801.10 | chr1:229625925:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1365:51417:27848 | . | NO_LDAS | 0.0146 | GT | 1.2419 | AG | 0.8366 | ["INTERCHROMOSOMAL[chr19--chr1]"] | chr19:52809847-chr1:229625925 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| PABPN1P2--KCTD12 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | PABPN1P2^ENSG00000255875.2 | chr19:52809847:+ | KCTD12^ENSG00000178695.6 | chr13:76886304:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1349:2893:26306 | . | NO_LDAS | 0.0048 | GT | 1.2419 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr19--chr13]"] | chr19:52809847-chr13:76886304 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| OSBPL2--PHACTR4 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | OSBPL2^ENSG00000130703.17 | chr20:62272259:+ | PHACTR4^ENSG00000204138.13 | chr1:28476107:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1336:16897:27385 | . | YES_LDAS | 0.0146 | GT | 1.7968 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr20--chr1]"] | chr20:62272259-chr1:28476107 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| OR56A1--VPS13C | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | OR56A1^ENSG00000180934.7 | chr11:6022596:- | VPS13C^ENSG00000129003.19 | chr15:61910305:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1339:7553:6773 | . | NO_LDAS | 0.0048 | GT | 1.7232 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr11--chr15]"] | chr11:6022596-chr15:61910305 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| OCA2--AC021979.2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | OCA2^ENSG00000104044.16 | chr15:27844959:- | AC021979.2^ENSG00000258853.1 | chr15:27685768:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1293:37818:23378 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9086 | ["GTEx_recurrent_StarF2019","INTRACHROMOSOMAL[chr15:0.07Mb]","NEIGHBORS[69107]"] | chr15:27844959-chr15:27685768 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| OBSCN--SCO2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | OBSCN^ENSG00000154358.23 | chr1:228215098:+ | SCO2^ENSG00000284194.3 | chr22:50523777:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2151:24283:17983 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr1--chr22]"] | chr1:228215098-chr22:50523777 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| OBSCN--C6orf132 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | OBSCN^ENSG00000154358.23 | chr1:228302810:+ | C6orf132^ENSG00000188112.9 | chr6:42105993:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:16225:23532 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr1--chr6]"] | chr1:228302810-chr6:42105993 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| OAZ1--PPP1R12C | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | OAZ1^ENSG00000104904.12 | chr19:2269744:+ | PPP1R12C^ENSG00000125503.13 | chr19:55096335:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1118:37955:13191 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.7968 | ["INTRACHROMOSOMAL[chr19:52.82Mb]"] | chr19:2269744-chr19:55096335 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| NUDCD3--AKAP9 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | NUDCD3^ENSG00000015676.18 | chr7:44484968:- | AKAP9^ENSG00000127914.19 | chr7:91992885:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1171:37130:18375 | . | YES_LDAS | 0.0146 | GT | 1.8062 | AG | 1.5656 | ["INTRACHROMOSOMAL[chr7:47.45Mb]"] | chr7:44484968-chr7:91992885 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| NSD3--CACNA2D1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | NSD3^ENSG00000147548.17 | chr8:38331431:- | CACNA2D1^ENSG00000153956.16 | chr7:81982627:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1342:31588:8553 | . | NO_LDAS | 0.0146 | GT | 1.7232 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr8--chr7]"] | chr8:38331431-chr7:81982627 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| NSD1--MGAT4C | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NSD1^ENSG00000165671.21 | chr5:177238507:+ | MGAT4C^ENSG00000182050.13 | chr12:85977101:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1388:4066:1098 | . | NO_LDAS | 0.0146 | GT | 1.9219 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr5--chr12]"] | chr5:177238507-chr12:85977101 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| NRDE2--MIDN | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NRDE2^ENSG00000119720.18 | chr14:90278610:- | MIDN^ENSG00000167470.12 | chr19:1254384:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2260:10239:3774 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr14--chr19]"] | chr14:90278610-chr19:1254384 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| NPB--SEPTIN6 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NPB^ENSG00000183979.8 | chr17:81901886:+ | SEPTIN6^ENSG00000125354.24 | chrX:119637195:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1304:51603:29543 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr17--chrX]"] | chr17:81901886-chrX:119637195 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| NOTCH2NLA--EPB41 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | NOTCH2NLA^ENSG00000264343.6 | chr1:146156139:- | EPB41^ENSG00000159023.22 | chr1:28987431:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1194:30561:26194 | . | YES_LDAS | 0.0048 | GT | 1.8295 | AG | 1.6895 | ["INTRACHROMOSOMAL[chr1:117.03Mb]"] | chr1:146156139-chr1:28987431 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| NIT2--TMEM231 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NIT2^ENSG00000114021.12 | chr3:100335056:+ | TMEM231^ENSG00000205084.11 | chr16:75556040:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1246:28967:8749 | . | NO_LDAS | 0.0146 | GT | 1.231 | AG | 1.2729 | ["INTERCHROMOSOMAL[chr3--chr16]"] | chr3:100335056-chr16:75556040 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| NFX1--RNF38 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | NFX1^ENSG00000086102.19 | chr9:33290597:+ | RNF38^ENSG00000137075.18 | chr9:36376127:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2257:39428:20253 | . | NO_LDAS | 0.0146 | GT | 1.7465 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr9:2.97Mb]"] | chr9:33290597-chr9:36376127 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| NEK4--RN7SL49P | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NEK4^ENSG00000114904.13 | chr3:52749760:- | RN7SL49P^ENSG00000265802.2 | chr13:45002205:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1121:40811:8160 | . | YES_LDAS | 0.0146 | GT | 1.6729 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr3--chr13]"] | chr3:52749760-chr13:45002205 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| NEK1--SEPSECS | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | NEK1^ENSG00000137601.17 | chr4:169576928:- | SEPSECS^ENSG00000109618.13 | chr4:25159107:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1321:24930:23055 | . | NO_LDAS | 0.0146 | GT | 1.3753 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr4:144.23Mb]"] | chr4:169576928-chr4:25159107 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| NDOR1--TRPM4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NDOR1^ENSG00000188566.14 | chr9:137206309:+ | TRPM4^ENSG00000130529.16 | chr19:49159214:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2442:7148:24485 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr9--chr19]"] | chr9:137206309-chr19:49159214 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| NCSTN--PACRG-AS1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NCSTN^ENSG00000162736.17 | chr1:160343468:+ | PACRG-AS1^ENSG00000281692.2 | chr6:163308789:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1439:32260:16526 | . | NO_LDAS | 0.0146 | GT | 1.3996 | AG | 1.7056 | ["INTERCHROMOSOMAL[chr1--chr6]"] | chr1:160343468-chr6:163308789 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| NCLN--LZTFL1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NCLN^ENSG00000125912.11 | chr19:3186126:+ | LZTFL1^ENSG00000163818.18 | chr3:45842013:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1132:24291:12672 | . | NO_LDAS | 0.0146 | GT | 1.5656 | AG | 1.3996 | ["INTERCHROMOSOMAL[chr19--chr3]"] | chr19:3186126-chr3:45842013 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| NAV1--KLC1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | NAV1^ENSG00000134369.15 | chr1:201783852:+ | KLC1^ENSG00000126214.21 | chr14:103709674:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2358:25294:8356 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr1--chr14]"] | chr1:201783852-chr14:103709674 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| NAPA--ARHGAP35 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | NAPA^ENSG00000105402.8 | chr19:47514843:- | ARHGAP35^ENSG00000160007.19 | chr19:46999304:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2308:26645:12826 | . | YES_LDAS | 0.0146 | GT | 1.5656 | AG | 1.8062 | ["INTRACHROMOSOMAL[chr19:0.48Mb]"] | chr19:47514843-chr19:46999304 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| NAP1L1--NFATC3 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | NAP1L1^ENSG00000187109.15 | chr12:76074203:- | NFATC3^ENSG00000072736.19 | chr16:68121987:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1310:46717:17633 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr12--chr16]"] | chr12:76074203-chr16:68121987 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| N4BP2L2--ARHGAP24 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | N4BP2L2^ENSG00000244754.9 | chr13:32517857:- | ARHGAP24^ENSG00000138639.18 | chr4:85923648:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2210:36378:1546 | . | YES_LDAS | 0.0146 | GT | 1.4295 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr13--chr4]"] | chr13:32517857-chr4:85923648 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MYBL2--KL | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MYBL2^ENSG00000101057.16 | chr20:43673899:+ | KL^ENSG00000133116.8 | chr13:33061726:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2452:46239:19692 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr20--chr13]"] | chr20:43673899-chr13:33061726 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MYBBP1A--BAZ2A | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MYBBP1A^ENSG00000132382.15 | chr17:4545136:- | BAZ2A^ENSG00000076108.12 | chr12:56613192:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2262:40034:1182 | . | NO_LDAS | 0.0146 | GT | 1.7465 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr17--chr12]"] | chr17:4545136-chr12:56613192 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MTMR3--PTK2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MTMR3^ENSG00000100330.16 | chr22:29883359:+ | PTK2^ENSG00000169398.19 | chr8:140764290:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1141:11371:19552 | . | YES_LDAS | 0.0146 | GT | 1.8062 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr22--chr8]"] | chr22:29883359-chr8:140764290 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MTMR10--SCAPER | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MTMR10^ENSG00000166912.17 | chr15:30990777:- | SCAPER^ENSG00000140386.13 | chr15:76804633:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2268:51797:3873 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8062 | ["INTRACHROMOSOMAL[chr15:45.36Mb]"] | chr15:30990777-chr15:76804633 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MTAP--KDM4C | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MTAP^ENSG00000099810.21 | chr9:21859425:+ | KDM4C^ENSG00000107077.19 | chr9:6849507:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1156:36507:20883 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.4566 | ["INTRACHROMOSOMAL[chr9:14.63Mb]"] | chr9:21859425-chr9:6849507 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MTA1--CRLF3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MTA1^ENSG00000182979.18 | chr14:105454315:+ | CRLF3^ENSG00000176390.12 | chr17:30793518:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1157:35188:24821 | . | NO_LDAS | 0.0146 | GT | 1.5058 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr14--chr17]"] | chr14:105454315-chr17:30793518 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MRPS11--RUNDC3B | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MRPS11^ENSG00000181991.16 | chr15:88475239:+ | RUNDC3B^ENSG00000105784.15 | chr7:87770711:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1204:26386:3802 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr15--chr7]"] | chr15:88475239-chr7:87770711 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MRPL23--SLC9A3R2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MRPL23^ENSG00000214026.11 | chr11:1956554:+ | SLC9A3R2^ENSG00000065054.14 | chr16:2032802:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1398:14001:29347 | . | NO_LDAS | 0.0146 | GC | 1.7232 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr11--chr16]"] | chr11:1956554-chr16:2032802 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MRI1--FAM189A1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MRI1^ENSG00000037757.14 | chr19:13768447:+ | FAM189A1^ENSG00000104059.4 | chr15:29252478:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1117:4018:16147 | . | YES_LDAS | 0.0146 | GT | 1.7465 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr19--chr15]"] | chr19:13768447-chr15:29252478 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MLLT10--MLLT6 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MLLT10^ENSG00000078403.17 | chr10:21534804:+ | MLLT6^ENSG00000275023.5 | chr17:38706950:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1112:36984:28632 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9329 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr10--chr17]"] | chr10:21534804-chr17:38706950 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| MIR29B2CHG--IRF6 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MIR29B2CHG^ENSG00000203709.12 | chr1:207817239:- | IRF6^ENSG00000117595.12 | chr1:209796552:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2365:45705:6157 | . | YES_LDAS | 0.0146 | GT | 1.6729 | AG | 1.8295 | ["INTRACHROMOSOMAL[chr1:1.91Mb]"] | chr1:207817239-chr1:209796552 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MIDEAS--TMEM127 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | MIDEAS^ENSG00000156030.13 | chr14:73721399:- | TMEM127^ENSG00000135956.9 | chr2:96250196:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1380:37356:20589 | . | NO_LDAS | 0.0073 | GT | 0.8366 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr14--chr2]"] | chr14:73721399-chr2:96250196 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MGAT4B--G0S2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MGAT4B^ENSG00000161013.17 | chr5:179800514:- | G0S2^ENSG00000123689.6 | chr1:209675673:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1216:12366:11523 | . | NO_LDAS | 0.0146 | GT | 1.7232 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr5--chr1]"] | chr5:179800514-chr1:209675673 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| METTL22--ZNF283 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | METTL22^ENSG00000067365.15 | chr16:8644725:+ | ZNF283^ENSG00000167637.18 | chr19:43833505:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2401:49629:29599 | . | YES_LDAS | 0.0146 | GT | 1.8295 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr16--chr19]"] | chr16:8644725-chr19:43833505 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| METRNL--NOC4L | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | METRNL^ENSG00000176845.13 | chr17:83079985:+ | NOC4L^ENSG00000184967.7 | chr12:132150981:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1373:21128:28436 | . | YES_LDAS | 0.0146 | GT | 1.6402 | AG | 1.5628 | ["INTERCHROMOSOMAL[chr17--chr12]"] | chr17:83079985-chr12:132150981 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MESD--AC114488.1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MESD^ENSG00000117899.11 | chr15:80948780:- | AC114488.1^ENSG00000229167.2 | chr1:31572121:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2249:1178:5876 | . | NO_LDAS | 0.0146 | GT | 1.6402 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr15--chr1]"] | chr15:80948780-chr1:31572121 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MDFIC--PCCA | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MDFIC^ENSG00000135272.12 | chr7:114979781:+ | PCCA^ENSG00000175198.17 | chr13:100209332:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2330:15667:7432 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr7--chr13]"] | chr7:114979781-chr13:100209332 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MDFIC--CCDC91 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MDFIC^ENSG00000135272.12 | chr7:114942397:+ | CCDC91^ENSG00000123106.10 | chr12:28484052:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2187:7432:6759 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr7--chr12]"] | chr7:114942397-chr12:28484052 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MCRIP1--C11orf49 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MCRIP1^ENSG00000225663.8 | chr17:81823455:- | C11orf49^ENSG00000149179.14 | chr11:47164250:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1129:30795:29067 | . | NO_LDAS | 0.0146 | GT | 1.4716 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr17--chr11]"] | chr17:81823455-chr11:47164250 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MCPH1--ELMO1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MCPH1^ENSG00000147316.13 | chr8:6499929:+ | ELMO1^ENSG00000155849.16 | chr7:36895017:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1265:51029:16750 | . | YES_LDAS | 0.0146 | GT | 1.6402 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr8--chr7]"] | chr8:6499929-chr7:36895017 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MCPH1--CHAF1A | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MCPH1^ENSG00000147316.13 | chr8:6414883:+ | CHAF1A^ENSG00000167670.16 | chr19:4409460:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2229:40293:18782 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr8--chr19]"] | chr8:6414883-chr19:4409460 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MC2R--HNRNPH1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MC2R^ENSG00000185231.5 | chr18:13885063:- | HNRNPH1^ENSG00000169045.17 | chr5:179617110:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1271:29954:28422 | . | NO_LDAS | 0.0146 | GT | 1.6895 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr18--chr5]"] | chr18:13885063-chr5:179617110 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MBD3--DPP9 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MBD3^ENSG00000071655.18 | chr19:1585055:- | DPP9^ENSG00000142002.18 | chr19:4700277:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1114:46150:15671 | . | YES_LDAS | 0.0146 | GT | 1.9086 | AG | 1.7819 | ["INTRACHROMOSOMAL[chr19:3.08Mb]"] | chr19:1585055-chr19:4700277 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MAP4K4--SMG1P1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MAP4K4^ENSG00000071054.16 | chr2:101698538:+ | SMG1P1^ENSG00000237296.9 | chr16:22451620:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1273:14963:22271 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr2--chr16]"] | chr2:101698538-chr16:22451620 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MAP3K4-AS1--AHDC1 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | MAP3K4-AS1^ENSG00000272841.1 | chr6:160991701:- | AHDC1^ENSG00000126705.15 | chr1:27604136:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1464:51579:20141 | . | NO_LDAS | 0.0048 | GC | 0.9183 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr6--chr1]"] | chr6:160991701-chr1:27604136 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MAP3K11--MATK | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | MAP3K11^ENSG00000173327.8 | chr11:65608268:- | MATK^ENSG00000007264.15 | chr19:3778566:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1276:50090:19524 | . | NO_LDAS | 0.0146 | GT | 1.9219 | AG | 1.4295 | ["INTERCHROMOSOMAL[chr11--chr19]"] | chr11:65608268-chr19:3778566 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| MAP2K1--SESN1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MAP2K1^ENSG00000169032.10 | chr15:66444707:+ | SESN1^ENSG00000080546.13 | chr6:109002343:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1264:31459:28226 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr15--chr6]"] | chr15:66444707-chr6:109002343 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MAP2K1--HTT | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MAP2K1^ENSG00000169032.10 | chr15:66444707:+ | HTT^ENSG00000197386.13 | chr4:3086939:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1307:33222:8973 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr15--chr4]"] | chr15:66444707-chr4:3086939 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MAD1L1--AC003102.1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MAD1L1^ENSG00000002822.16 | chr7:1898200:- | AC003102.1^ENSG00000260793.2 | chr17:44222462:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1249:51109:7362 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr7--chr17]"] | chr7:1898200-chr17:44222462 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MACO1--ETS2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MACO1^ENSG00000204178.11 | chr1:25431178:+ | ETS2^ENSG00000157557.13 | chr21:38819503:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1175:47178:23392 | . | YES_LDAS | 0.0146 | GT | 1.9219 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr1--chr21]"] | chr1:25431178-chr21:38819503 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| MACF1--DST | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | MACF1^ENSG00000127603.30 | chr1:39254375:+ | DST^ENSG00000151914.21 | chr6:56699745:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1464:10441:6703 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.5656 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr1--chr6]"] | chr1:39254375-chr6:56699745 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| LYPLA1--SPIRE1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | LYPLA1^ENSG00000120992.18 | chr8:54100908:- | SPIRE1^ENSG00000134278.15 | chr18:12635096:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2186:51385:21990 | . | YES_LDAS | 0.0146 | GT | 1.8062 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr8--chr18]"] | chr8:54100908-chr18:12635096 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| LUC7L3--MALAT1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | LUC7L3^ENSG00000108848.16 | chr17:50750878:+ | MALAT1^ENSG00000251562.8 | chr11:65499082:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2218:48618:28044 | . | YES_LDAS | 0.0146 | GT | 1.7232 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr17--chr11]"] | chr17:50750878-chr11:65499082 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| LUC7L2--SNED1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | LUC7L2^ENSG00000146963.18 | chr7:139417729:+ | SNED1^ENSG00000162804.14 | chr2:241030284:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2357:15028:18067 | . | YES_LDAS | 0.0146 | GT | 1.7819 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr7--chr2]"] | chr7:139417729-chr2:241030284 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| LRBA--IRS4 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | LRBA^ENSG00000198589.14 | chr4:150851929:- | IRS4^ENSG00000133124.12 | chrX:108730536:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2161:8103:16217 | . | NO_LDAS | 0.0073 | GT | 1.8892 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr4--chrX]"] | chr4:150851929-chrX:108730536 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| LPCAT1--LMO7 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | LPCAT1^ENSG00000153395.10 | chr5:1501470:- | LMO7^ENSG00000136153.20 | chr13:75841728:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2281:15360:15839 | . | NO_LDAS | 0.0146 | GT | 1.4716 | AG | 1.5301 | ["INTERCHROMOSOMAL[chr5--chr13]"] | chr5:1501470-chr13:75841728 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| LINC02802--UBAC2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | LINC02802^ENSG00000232527.8 | chr1:144250225:- | UBAC2^ENSG00000134882.16 | chr13:99238427:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1209:27568:2597 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr1--chr13]"] | chr1:144250225-chr13:99238427 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| LINC02693--TXNIP | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | LINC02693^ENSG00000212719.13 | chr17:21551066:- | TXNIP^ENSG00000265972.6 | chr1:145994345:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1308:46789:9435 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr17--chr1]"] | chr17:21551066-chr1:145994345 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| LINC02506--SNX4 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | LINC02506^ENSG00000251129.2 | chr4:32155406:+ | SNX4^ENSG00000114520.11 | chr3:125504744:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2145:26386:11369 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr4--chr3]"] | chr4:32155406-chr3:125504744 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| LINC02031--HECTD1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | LINC02031^ENSG00000238837.3 | chr3:182645024:+ | HECTD1^ENSG00000092148.13 | chr14:31133675:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1327:17075:7067 | . | YES_LDAS | 0.0146 | GT | 1.7465 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr3--chr14]"] | chr3:182645024-chr14:31133675 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| LINC01741--LTB | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | LINC01741^ENSG00000236720.2 | chr1:177700800:+ | LTB^ENSG00000227507.3 | chr6:31581619:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1169:39824:14270 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr1--chr6]"] | chr1:177700800-chr6:31581619 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| LINC01278--HDAC8 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | LINC01278^ENSG00000235437.8 | chrX:63399781:- | HDAC8^ENSG00000147099.21 | chrX:72495268:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1268:9729:23994 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.9086 | ["INTRACHROMOSOMAL[chrX:8.77Mb]"] | chrX:63399781-chrX:72495268 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| LINC00683--GPAA1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | LINC00683^ENSG00000266256.3 | chr18:76619975:+ | GPAA1^ENSG00000197858.11 | chr8:144085117:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1377:38926:6857 | . | NO_LDAS | 0.0146 | GT | 1.5546 | AG | 1.4716 | ["INTERCHROMOSOMAL[chr18--chr8]"] | chr18:76619975-chr8:144085117 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| LINC00299--RBM33 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | LINC00299^ENSG00000236790.6 | chr2:8287338:- | RBM33^ENSG00000184863.11 | chr7:155763809:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1133:20732:5246 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.3996 | ["INTERCHROMOSOMAL[chr2--chr7]"] | chr2:8287338-chr7:155763809 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| LINC00271--ANXA11 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | LINC00271^ENSG00000231028.9 | chr6:135525936:+ | ANXA11^ENSG00000122359.18 | chr10:80157756:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2407:44557:23027 | . | NO_LDAS | 0.0073 | GT | 1.8062 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr6--chr10]"] | chr6:135525936-chr10:80157756 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| LAMP2--TMEM132B | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | LAMP2^ENSG00000005893.16 | chrX:120438698:- | TMEM132B^ENSG00000139364.10 | chr12:125587205:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1169:5296:13849 | . | YES_LDAS | 0.0073 | GT | 0.9968 | AG | 1.2867 | ["INTERCHROMOSOMAL[chrX--chr12]"] | chrX:120438698-chr12:125587205 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| LAMA5--ZBTB48 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | LAMA5^ENSG00000130702.15 | chr20:62366949:- | ZBTB48^ENSG00000204859.13 | chr1:6580676:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1497:10239:10640 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr20--chr1]"] | chr20:62366949-chr1:6580676 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| KRT6A--KRT8P10 | 1 | 0 | 0.14 | 0.0 | INCL_NON_REF_SPLICE | KRT6A^ENSG00000205420.11 | chr12:52491112:- | KRT8P10^ENSG00000231203.1 | chr2:183071980:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1222:44435:3873 | . | NO_LDAS | 0.002 | GT | 1.9086 | AG | 1.6049 | ["INTERCHROMOSOMAL[chr12--chr2]"] | chr12:52491112-chr2:183071980 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| KLHDC8A--AC025040.2 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | KLHDC8A^ENSG00000162873.15 | chr1:205343225:- | AC025040.2^ENSG00000259388.1 | chr15:49794769:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1152:23110:17717 | . | NO_LDAS | 0.0073 | GT | 1.5656 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr1--chr15]"] | chr1:205343225-chr15:49794769 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| KLF7--KLF6 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | KLF7^ENSG00000118263.15 | chr2:207088458:- | KLF6^ENSG00000067082.15 | chr10:3779590:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1332:46781:27946 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.7465 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr2--chr10]"] | chr2:207088458-chr10:3779590 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| KLF3P1--CLUH | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | KLF3P1^ENSG00000253218.1 | chr5:172255052:- | CLUH^ENSG00000132361.18 | chr17:2696538:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1276:14389:25143 | . | NO_LDAS | 0.0146 | GC | 1.9329 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr5--chr17]"] | chr5:172255052-chr17:2696538 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| KLF10--PPP1R9B | 1 | 0 | 0.17 | 0.0 | INCL_NON_REF_SPLICE | KLF10^ENSG00000155090.15 | chr8:102654010:- | PPP1R9B^ENSG00000108819.11 | chr17:50149259:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1128:13620:25942 | . | NO_LDAS | 0.0025 | GT | 1.3383 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr8--chr17]"] | chr8:102654010-chr17:50149259 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| KIAA1143--CRELD2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | KIAA1143^ENSG00000163807.6 | chr3:44751277:- | CRELD2^ENSG00000184164.15 | chr22:49920160:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2275:4325:15671 | . | NO_LDAS | 0.0146 | GT | 1.8256 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr3--chr22]"] | chr3:44751277-chr22:49920160 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| KDM7A--SND1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | KDM7A^ENSG00000006459.11 | chr7:140176744:- | SND1^ENSG00000197157.11 | chr7:127721287:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2232:30197:10430 | . | YES_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8323 | ["DEEPEST2019","INTRACHROMOSOMAL[chr7:11.99Mb]"] | chr7:140176744-chr7:127721287 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| KDM6B--NPHP4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | KDM6B^ENSG00000132510.11 | chr17:7849482:+ | NPHP4^ENSG00000131697.18 | chr1:5866121:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1444:47760:28660 | . | NO_LDAS | 0.0146 | GT | 1.053 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr17--chr1]"] | chr17:7849482-chr1:5866121 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| KDM5C--AP001107.2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | KDM5C^ENSG00000126012.12 | chrX:53192871:- | AP001107.2^ENSG00000254452.1 | chr11:66276866:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2296:25861:23238 | . | NO_LDAS | 0.0146 | GT | 1.053 | AG | 1.6049 | ["INTERCHROMOSOMAL[chrX--chr11]"] | chrX:53192871-chr11:66276866 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| KCTD21--CYCS | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | KCTD21^ENSG00000188997.8 | chr11:78176904:- | CYCS^ENSG00000172115.9 | chr7:25121816:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1420:29307:25928 | . | YES_LDAS | 0.0146 | GT | 1.6402 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr11--chr7]"] | chr11:78176904-chr7:25121816 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| KCNK6--PLP2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | KCNK6^ENSG00000099337.5 | chr19:38320272:+ | PLP2^ENSG00000102007.11 | chrX:49174335:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1485:18280:9519 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr19--chrX]"] | chr19:38320272-chrX:49174335 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| KCNG3--NXF1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | KCNG3^ENSG00000171126.8 | chr2:42443170:- | NXF1^ENSG00000162231.14 | chr11:62794943:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1325:36944:10374 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr2--chr11]"] | chr2:42443170-chr11:62794943 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| KCNAB2--AC018685.2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | KCNAB2^ENSG00000069424.15 | chr1:6087515:+ | AC018685.2^ENSG00000234929.2 | chr2:2639486:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2229:15967:9884 | . | NO_LDAS | 0.0146 | GT | 1.6402 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr1--chr2]"] | chr1:6087515-chr2:2639486 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| JAG1--YPEL3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | JAG1^ENSG00000101384.12 | chr20:10651592:- | YPEL3^ENSG00000090238.12 | chr16:30096008:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2310:12544:21836 | . | YES_LDAS | 0.0146 | AT | 1.6402 | AC | 1.4716 | ["INTERCHROMOSOMAL[chr20--chr16]"] | chr20:10651592-chr16:30096008 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| IYD--TAF12 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | IYD^ENSG00000009765.15 | chr6:150369076:+ | TAF12^ENSG00000120656.12 | chr1:28605460:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2173:12698:3326 | . | NO_LDAS | 0.0146 | GT | 1.7232 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr6--chr1]"] | chr6:150369076-chr1:28605460 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ITSN2--CCDC91 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ITSN2^ENSG00000198399.15 | chr2:24313460:- | CCDC91^ENSG00000123106.10 | chr12:28391304:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1141:26103:15166 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr2--chr12]"] | chr2:24313460-chr12:28391304 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| IRF5P1--ARPC2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | IRF5P1^ENSG00000251347.2 | chr8:92974029:+ | ARPC2^ENSG00000163466.16 | chr2:218249821:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1376:13014:5246 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr8--chr2]"] | chr8:92974029-chr2:218249821 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| IRAK1--AC093702.1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | IRAK1^ENSG00000184216.14 | chrX:154018971:- | AC093702.1^ENSG00000231156.1 | chr2:45013385:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1204:44193:11832 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.8062 | ["INTERCHROMOSOMAL[chrX--chr2]"] | chrX:154018971-chr2:45013385 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| IQGAP1--CDH19 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | IQGAP1^ENSG00000140575.13 | chr15:90452816:+ | CDH19^ENSG00000071991.9 | chr18:66604070:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2333:8710:27161 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr15--chr18]"] | chr15:90452816-chr18:66604070 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| IPO4--COL1A1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | IPO4^ENSG00000196497.17 | chr14:24188445:- | COL1A1^ENSG00000108821.14 | chr17:50195072:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1187:8249:20925 | . | NO_LDAS | 0.0146 | GT | 1.5546 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr14--chr17]"] | chr14:24188445-chr17:50195072 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| INVS--HABP4 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | INVS^ENSG00000119509.13 | chr9:100264928:+ | HABP4^ENSG00000130956.14 | chr9:96484462:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2127:17067:2457 | . | YES_LDAS | 0.0146 | GT | 1.4716 | AG | 1.9086 | ["INTRACHROMOSOMAL[chr9:3.61Mb]"] | chr9:100264928-chr9:96484462 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| INPP5D--SRSF5 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | INPP5D^ENSG00000168918.14 | chr2:233125886:+ | SRSF5^ENSG00000100650.16 | chr14:69766919:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1411:43748:26558 | . | NO_LDAS | 0.0073 | GT | 1.8892 | AG | 1.5301 | ["INTERCHROMOSOMAL[chr2--chr14]"] | chr2:233125886-chr14:69766919 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| INPP5D--ADRA2A | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | INPP5D^ENSG00000168918.14 | chr2:233125886:+ | ADRA2A^ENSG00000150594.7 | chr10:111078588:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1411:43748:26558 | . | NO_LDAS | 0.0073 | GT | 1.8892 | AG | 1.2729 | ["INTERCHROMOSOMAL[chr2--chr10]"] | chr2:233125886-chr10:111078588 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| IL17D--WBP2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | IL17D^ENSG00000172458.4 | chr13:20721765:+ | WBP2^ENSG00000132471.12 | chr17:75846787:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2386:48060:7600 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.4566 | ["INTERCHROMOSOMAL[chr13--chr17]"] | chr13:20721765-chr17:75846787 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| IKZF3--CNTNAP4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | IKZF3^ENSG00000161405.17 | chr17:39832098:- | CNTNAP4^ENSG00000152910.19 | chr16:76559368:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1107:24299:23840 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr17--chr16]"] | chr17:39832098-chr16:76559368 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HUWE1--EPS15L1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | HUWE1^ENSG00000086758.16 | chrX:53603492:- | EPS15L1^ENSG00000127527.14 | chr19:16471991:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1338:32082:16862 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.1033 | ["INTERCHROMOSOMAL[chrX--chr19]"] | chrX:53603492-chr19:16471991 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HTRA2--TNRC6C | 1 | 0 | 0.12 | 0.0 | INCL_NON_REF_SPLICE | HTRA2^ENSG00000115317.12 | chr2:74530362:+ | TNRC6C^ENSG00000078687.17 | chr17:78049790:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1483:30391:22397 | . | NO_LDAS | 0.0018 | GT | 1.6402 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr2--chr17]"] | chr2:74530362-chr17:78049790 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HSD17B4--FYTTD1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | HSD17B4^ENSG00000133835.17 | chr5:119472576:+ | FYTTD1^ENSG00000122068.13 | chr3:197770154:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1209:22244:27651 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr5--chr3]"] | chr5:119472576-chr3:197770154 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HOXA6--HOXA10 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | HOXA6^ENSG00000106006.6 | chr7:27145842:- | HOXA10^ENSG00000253293.5 | chr7:27172069:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2192:51474:1462 | . | NO_LDAS | 0.0146 | GT | 1.5329 | AG | 1.7232 | ["HGNC_GENEFAM","INTRACHROMOSOMAL[chr7:0.02Mb]","LOCAL_REARRANGEMENT:-:[19989]"] | chr7:27145842-chr7:27172069 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| HNRNPR--KDM5A | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | HNRNPR^ENSG00000125944.21 | chr1:23333518:- | KDM5A^ENSG00000073614.13 | chr12:352324:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1355:13750:15657 | . | NO_LDAS | 0.0146 | GT | 1.6895 | AG | 1.9219 | ["INTERCHROMOSOMAL[chr1--chr12]"] | chr1:23333518-chr12:352324 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| HNRNPL--RASSF4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | HNRNPL^ENSG00000104824.18 | chr19:38840135:- | RASSF4^ENSG00000107551.21 | chr10:44984680:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1130:39694:6843 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr19--chr10]"] | chr19:38840135-chr10:44984680 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HNRNPA3--PLCD4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | HNRNPA3^ENSG00000170144.21 | chr2:177222657:+ | PLCD4^ENSG00000115556.14 | chr2:218629022:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1462:23094:6143 | . | NO_LDAS | 0.0146 | GT | 1.053 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr2:41.38Mb]"] | chr2:177222657-chr2:218629022 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HMX1--RUFY1 | 1 | 0 | 0.25 | 0.0 | INCL_NON_REF_SPLICE | HMX1^ENSG00000215612.8 | chr4:8867970:- | RUFY1^ENSG00000176783.15 | chr5:179598805:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1326:20853:11173 | . | NO_LDAS | 0.0037 | GT | 1.5219 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr4--chr5]"] | chr4:8867970-chr5:179598805 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HM13--TRIO | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | HM13^ENSG00000101294.18 | chr20:31568193:+ | TRIO^ENSG00000038382.20 | chr5:14143371:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2369:8321:26516 | . | NO_LDAS | 0.0073 | GC | 1.8892 | AG | 1.2729 | ["INTERCHROMOSOMAL[chr20--chr5]"] | chr20:31568193-chr5:14143371 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HM13--NUDT18 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | HM13^ENSG00000101294.18 | chr20:31568193:+ | NUDT18^ENSG00000275074.2 | chr8:22109207:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2369:8321:26516 | . | NO_LDAS | 0.0073 | GC | 1.8892 | AG | 1.2729 | ["INTERCHROMOSOMAL[chr20--chr8]"] | chr20:31568193-chr8:22109207 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HLA-J--HLA-W | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | HLA-J^ENSG00000204622.11 | chr6:30007593:+ | HLA-W^ENSG00000235290.1 | chr6:29957439:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2259:15740:4195 | . | YES_LDAS | 0.0146 | GT | 1.5628 | AG | 1.5628 | ["HGNC_GENEFAM","INTRACHROMOSOMAL[chr6:0.05Mb]","LOCAL_REARRANGEMENT:+:[47401]"] | chr6:30007593-chr6:29957439 | True | pair|MHC complexes|HLA-W HLA-J | 0 | Blacklisted | FAIL | 1 |
| HLA-E--FOXN3P1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | HLA-E^ENSG00000204592.9 | chr6:30489995:+ | FOXN3P1^ENSG00000176318.8 | chrX:102547682:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1135:38958:6100 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr6--chrX]"] | chr6:30489995-chrX:102547682 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HLA-DRA--HLA-DQA1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | HLA-DRA^ENSG00000204287.14 | chr6:32443466:+ | HLA-DQA1^ENSG00000196735.13 | chr6:32642610:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1111:36701:17352 | . | YES_LDAS | 0.0146 | GT | 1.9899 | AG | 1.9899 | ["DGD_PARALOGS","HGNC_GENEFAM","INTRACHROMOSOMAL[chr6:0.18Mb]"] | chr6:32443466-chr6:32642610 | True | pair|MHC complexes|HLA-DRA HLA-DQA1; pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| HLA-C--HLA-S | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | HLA-C^ENSG00000204525.17 | chr6:31269338:- | HLA-S^ENSG00000225851.1 | chr6:31382078:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1487:7715:14872 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.9086 | ["GTEx_recurrent_StarF2019","HGNC_GENEFAM","INTRACHROMOSOMAL[chr6:0.11Mb]"] | chr6:31269338-chr6:31382078 | True | pair|recurrent breakpoints; pair|MHC complexes|HLA-S HLA-C | 0 | Blacklisted | FAIL | 1 |
| HLA-C--AC009884.2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | HLA-C^ENSG00000204525.17 | chr6:31269493:- | AC009884.2^ENSG00000270255.1 | chr8:19001925:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2275:51344:29627 | . | NO_LDAS | 0.0146 | GT | 1.8256 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr6--chr8]"] | chr6:31269493-chr8:19001925 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| HIF1A--ADAMTSL4-AS2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | HIF1A^ENSG00000100644.17 | chr14:61695839:+ | ADAMTSL4-AS2^ENSG00000237781.3 | chr1:150557724:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1440:23636:9744 | . | YES_LDAS | 0.0146 | GT | 1.2419 | AG | 1.9219 | ["INTERCHROMOSOMAL[chr14--chr1]"] | chr14:61695839-chr1:150557724 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| HERC5--UBAP2L | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | HERC5^ENSG00000138646.9 | chr4:88500985:+ | UBAP2L^ENSG00000143569.19 | chr1:154270260:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:27390:27231 | . | NO_LDAS | 0.0073 | GT | 1.5329 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr4--chr1]"] | chr4:88500985-chr1:154270260 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HAX1--SSTR2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | HAX1^ENSG00000143575.15 | chr1:154275264:+ | SSTR2^ENSG00000180616.9 | chr17:73174361:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2170:41903:2037 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr1--chr17]"] | chr1:154275264-chr17:73174361 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| HARS1--SERPINF1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | HARS1^ENSG00000170445.16 | chr5:140691509:- | SERPINF1^ENSG00000132386.11 | chr17:1775058:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2405:37866:13569 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr5--chr17]"] | chr5:140691509-chr17:1775058 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GTF2E2--KCTD1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GTF2E2^ENSG00000197265.9 | chr8:30658137:- | KCTD1^ENSG00000134504.14 | chr18:26549042:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1488:10813:3985 | . | NO_LDAS | 0.0146 | GT | 1.2419 | AG | 1.053 | ["INTERCHROMOSOMAL[chr8--chr18]"] | chr8:30658137-chr18:26549042 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GSPT1--SNX29 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | GSPT1^ENSG00000103342.13 | chr16:11915369:- | SNX29^ENSG00000048471.14 | chr16:12126633:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1116:42761:20982 | . | YES_LDAS | 0.0146 | GT | 1.4716 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr16:0.06Mb]","LOCAL_INVERSION:-:+:[60652]"] | chr16:11915369-chr16:12126633 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| GSDMB--HEG1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GSDMB^ENSG00000073605.18 | chr17:39919305:- | HEG1^ENSG00000173706.14 | chr3:125019356:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1465:27592:28366 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr17--chr3]"] | chr17:39919305-chr3:125019356 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GRK2--PCAT1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GRK2^ENSG00000173020.11 | chr11:67279519:+ | PCAT1^ENSG00000253438.4 | chr8:126713798:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2206:31928:21528 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr11--chr8]"] | chr11:67279519-chr8:126713798 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GRK2--AKT1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GRK2^ENSG00000173020.11 | chr11:67285385:+ | AKT1^ENSG00000142208.17 | chr14:104774467:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1176:7852:22845 | . | NO_LDAS | 0.0146 | GC | 1.8062 | AG | 1.8892 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr11--chr14]"] | chr11:67285385-chr14:104774467 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| GRAMD1B--RBM6 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GRAMD1B^ENSG00000023171.18 | chr11:123358478:+ | RBM6^ENSG00000004534.15 | chr3:50066312:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1378:35601:21472 | . | NO_LDAS | 0.0146 | GT | 1.3383 | AG | 1.2729 | ["INTERCHROMOSOMAL[chr11--chr3]"] | chr11:123358478-chr3:50066312 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GPSM3--TLL2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GPSM3^ENSG00000213654.10 | chr6:32192148:- | TLL2^ENSG00000095587.9 | chr10:96432931:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1437:13620:10612 | . | NO_LDAS | 0.0146 | GT | 1.5301 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr6--chr10]"] | chr6:32192148-chr10:96432931 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GOLGA3--DNAJC27-AS1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GOLGA3^ENSG00000090615.15 | chr12:132774157:- | DNAJC27-AS1^ENSG00000224165.6 | chr2:25036816:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1268:50689:22383 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr12--chr2]"] | chr12:132774157-chr2:25036816 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GMIP--TTC12 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GMIP^ENSG00000089639.11 | chr19:19638427:- | TTC12^ENSG00000149292.17 | chr11:113323350:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2366:32535:27175 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr19--chr11]"] | chr19:19638427-chr11:113323350 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GLG1--CUL5 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | GLG1^ENSG00000090863.12 | chr16:74606657:- | CUL5^ENSG00000166266.14 | chr11:108033802:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1129:51724:15265 | . | YES_LDAS | 0.0146 | GT | 1.6402 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr16--chr11]"] | chr16:74606657-chr11:108033802 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| GJB7--SH3GL1P2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GJB7^ENSG00000164411.12 | chr6:87329138:- | SH3GL1P2^ENSG00000264943.1 | chr17:30624418:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1423:34242:6423 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr6--chr17]"] | chr6:87329138-chr17:30624418 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GET4--DVL1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GET4^ENSG00000239857.7 | chr7:893815:+ | DVL1^ENSG00000107404.20 | chr1:1338570:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2202:26637:13373 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr7--chr1]"] | chr7:893815-chr1:1338570 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GDF11--RAPGEF6 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GDF11^ENSG00000135414.10 | chr12:55752395:+ | RAPGEF6^ENSG00000158987.22 | chr5:131429121:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2178:6873:6745 | . | NO_LDAS | 0.0146 | GT | 0.6998 | AG | 1.5219 | ["INTERCHROMOSOMAL[chr12--chr5]"] | chr12:55752395-chr5:131429121 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GDF11--PIEZO1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GDF11^ENSG00000135414.10 | chr12:55750097:+ | PIEZO1^ENSG00000103335.22 | chr16:88736785:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1259:48205:27469 | . | NO_LDAS | 0.0146 | GT | 1.6729 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr12--chr16]"] | chr12:55750097-chr16:88736785 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GALNT7--KLHL2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | GALNT7^ENSG00000109586.12 | chr4:173168961:+ | KLHL2^ENSG00000109466.14 | chr4:165219934:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1389:47129:5568 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.7819 | ["INTRACHROMOSOMAL[chr4:7.85Mb]"] | chr4:173168961-chr4:165219934 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| GALNT2--CD46 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | GALNT2^ENSG00000143641.10 | chr1:230067406:+ | CD46^ENSG00000117335.20 | chr1:207757014:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2194:17010:28898 | . | NO_LDAS | 0.0146 | GT | 1.4566 | AG | 1.9219 | ["INTRACHROMOSOMAL[chr1:22.26Mb]"] | chr1:230067406-chr1:207757014 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| GAK--MAP2K2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GAK^ENSG00000178950.17 | chr4:866406:- | MAP2K2^ENSG00000126934.14 | chr19:4104754:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1113:40107:10416 | . | NO_LDAS | 0.0146 | GT | 1.7232 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr4--chr19]"] | chr4:866406-chr19:4104754 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GABBR1--TCEAL3 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | GABBR1^ENSG00000204681.11 | chr6:29556097:- | TCEAL3^ENSG00000196507.11 | chrX:103609224:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2229:44395:4951 | . | NO_LDAS | 0.0048 | GT | 1.6402 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr6--chrX]"] | chr6:29556097-chrX:103609224 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| GAB3--JAKMIP2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | GAB3^ENSG00000160219.12 | chrX:154712229:- | JAKMIP2^ENSG00000176049.16 | chr5:147587887:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1308:17431:26376 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.9656 | ["INTERCHROMOSOMAL[chrX--chr5]"] | chrX:154712229-chr5:147587887 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FXYD5--GRIN2B | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FXYD5^ENSG00000089327.15 | chr19:35160801:+ | GRIN2B^ENSG00000273079.7 | chr12:13544262:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2113:48658:5274 | . | NO_LDAS | 0.0146 | GT | 1.5301 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr19--chr12]"] | chr19:35160801-chr12:13544262 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FOXN4--SCRIB | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FOXN4^ENSG00000139445.18 | chr12:109287848:- | SCRIB^ENSG00000180900.20 | chr8:143792771:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2412:50155:17759 | . | NO_LDAS | 0.0146 | GC | 1.4716 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr12--chr8]"] | chr12:109287848-chr8:143792771 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FNIP1--RAPGEF1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FNIP1^ENSG00000217128.12 | chr5:131642746:- | RAPGEF1^ENSG00000107263.18 | chr9:131626422:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2317:43885:7207 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr5--chr9]"] | chr5:131642746-chr9:131626422 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FLYWCH1--JPT2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | FLYWCH1^ENSG00000059122.17 | chr16:2940092:+ | JPT2^ENSG00000206053.13 | chr16:1685439:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2254:38885:24471 | . | YES_LDAS | 0.0146 | GT | 1.9899 | AG | 1.7465 | ["INTRACHROMOSOMAL[chr16:1.21Mb]"] | chr16:2940092-chr16:1685439 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| FLNA--NDUFS2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FLNA^ENSG00000196924.19 | chrX:154366024:- | NDUFS2^ENSG00000158864.13 | chr1:161202574:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1166:3217:24457 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.8892 | ["INTERCHROMOSOMAL[chrX--chr1]"] | chrX:154366024-chr1:161202574 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FLII--AC027130.1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FLII^ENSG00000177731.16 | chr17:18253611:- | AC027130.1^ENSG00000261195.1 | chr16:19761447:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1151:19267:28856 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr17--chr16]"] | chr17:18253611-chr16:19761447 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FLI1--L3MBTL3 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | FLI1^ENSG00000151702.17 | chr11:128758326:+ | L3MBTL3^ENSG00000198945.8 | chr6:130022227:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1154:36604:23910 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr11--chr6]"] | chr11:128758326-chr6:130022227 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| FGFR3--DDX5 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | FGFR3^ENSG00000068078.20 | chr4:1794043:+ | DDX5^ENSG00000108654.16 | chr17:64504842:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1142:15602:25451 | . | YES_LDAS | 0.0146 | GT | 1.5546 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr4--chr17]"] | chr4:1794043-chr17:64504842 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| FCGBP--PDHX | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | FCGBP^ENSG00000275395.6 | chr19:39905731:- | PDHX^ENSG00000110435.12 | chr11:35020208:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2233:38562:18641 | . | YES_LDAS | 0.0073 | GT | 1.8892 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr19--chr11]"] | chr19:39905731-chr11:35020208 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| FCGBP--PDHX | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | FCGBP^ENSG00000275395.6 | chr19:39889479:- | PDHX^ENSG00000110435.12 | chr11:35020208:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2233:38562:18641 | . | YES_LDAS | 0.0073 | GT | 1.8892 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr19--chr11]"] | chr19:39889479-chr11:35020208 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| FBXO34--USP48 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | FBXO34^ENSG00000178974.11 | chr14:55278829:+ | USP48^ENSG00000090686.16 | chr1:21715457:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1163:49920:26572 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr14--chr1]"] | chr14:55278829-chr1:21715457 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| FARSA--EIF3C | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | FARSA^ENSG00000179115.11 | chr19:12924151:- | EIF3C^ENSG00000184110.15 | chr16:28723164:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2168:27584:10865 | . | YES_LDAS | 0.0073 | GT | 1.7465 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr19--chr16]"] | chr19:12924151-chr16:28723164 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| FAM98A--SYNRG | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FAM98A^ENSG00000119812.19 | chr2:33585246:- | SYNRG^ENSG00000275066.5 | chr17:37539245:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1385:29501:12868 | . | NO_LDAS | 0.0146 | GT | 1.5546 | AG | 1.4566 | ["INTERCHROMOSOMAL[chr2--chr17]"] | chr2:33585246-chr17:37539245 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FAM71D--PKMYT1 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | FAM71D^ENSG00000172717.16 | chr14:67200170:+ | PKMYT1^ENSG00000127564.17 | chr16:2971712:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2193:31936:3718 | . | NO_LDAS | 0.0073 | AT | 1.7968 | AC | 1.3753 | ["INTERCHROMOSOMAL[chr14--chr16]"] | chr14:67200170-chr16:2971712 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FAM171B--ATRX | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FAM171B^ENSG00000144369.13 | chr2:186761692:+ | ATRX^ENSG00000085224.23 | chrX:77676298:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2164:36378:1715 | . | NO_LDAS | 0.0146 | GT | 1.1589 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr2--chrX]"] | chr2:186761692-chrX:77676298 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FAM169A--ZNF318 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FAM169A^ENSG00000198780.12 | chr5:74866327:- | ZNF318^ENSG00000171467.16 | chr6:43369412:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1320:44290:14746 | . | NO_LDAS | 0.0146 | GT | 1.4566 | AG | 1.5628 | ["INTERCHROMOSOMAL[chr5--chr6]"] | chr5:74866327-chr6:43369412 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FAM168A--GPR22 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FAM168A^ENSG00000054965.11 | chr11:73411495:- | GPR22^ENSG00000172209.6 | chr7:107474387:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2187:29922:25676 | . | NO_LDAS | 0.0146 | GT | 1.6402 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr11--chr7]"] | chr11:73411495-chr7:107474387 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| FAM160A1--BTRC | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | FAM160A1^ENSG00000164142.16 | chr4:151454808:+ | BTRC^ENSG00000166167.18 | chr10:101461981:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1105:30156:27035 | . | YES_LDAS | 0.0146 | GT | 1.7819 | AG | 1.9219 | ["INTERCHROMOSOMAL[chr4--chr10]"] | chr4:151454808-chr10:101461981 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| FAM135A--MTMR14 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | FAM135A^ENSG00000082269.17 | chr6:70525470:+ | MTMR14^ENSG00000163719.20 | chr3:9668719:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1172:41782:17268 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr6--chr3]"] | chr6:70525470-chr3:9668719 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| EXPH5--SEC61A1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | EXPH5^ENSG00000110723.12 | chr11:108506866:- | SEC61A1^ENSG00000058262.10 | chr3:128066954:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2413:17269:15054 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr11--chr3]"] | chr11:108506866-chr3:128066954 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| EVL--PYCR2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | EVL^ENSG00000196405.13 | chr14:99972013:+ | PYCR2^ENSG00000143811.19 | chr1:225920410:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2385:28660:18557 | . | NO_LDAS | 0.0146 | GT | 0.971 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr14--chr1]"] | chr14:99972013-chr1:225920410 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ERMAP--USP44 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ERMAP^ENSG00000164010.15 | chr1:42824492:+ | USP44^ENSG00000136014.12 | chr12:95524746:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2361:9891:23069 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.3996 | ["INTERCHROMOSOMAL[chr1--chr12]"] | chr1:42824492-chr12:95524746 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ERGIC3--GRAMD1C | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ERGIC3^ENSG00000125991.20 | chr20:35542941:+ | GRAMD1C^ENSG00000178075.20 | chr3:113946593:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1492:39670:26306 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr20--chr3]"] | chr20:35542941-chr3:113946593 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ERCC1--AC103718.1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ERCC1^ENSG00000012061.16 | chr19:45449173:- | AC103718.1^ENSG00000285108.1 | chr8:129686659:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2252:35876:8721 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr19--chr8]"] | chr19:45449173-chr8:129686659 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ERBB2--PITX2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ERBB2^ENSG00000141736.14 | chr17:39726659:+ | PITX2^ENSG00000164093.17 | chr4:110621343:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2317:28425:28464 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr17--chr4]"] | chr17:39726659-chr4:110621343 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| EPS8L3--SPTAN1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | EPS8L3^ENSG00000198758.11 | chr1:109757821:- | SPTAN1^ENSG00000197694.18 | chr9:128615749:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2404:26119:28114 | . | NO_LDAS | 0.0146 | GC | 1.8892 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr1--chr9]"] | chr1:109757821-chr9:128615749 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| EPN3--EPN1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | EPN3^ENSG00000049283.18 | chr17:50536922:+ | EPN1^ENSG00000063245.15 | chr19:55685489:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2153:38853:9898 | . | NO_LDAS | 0.0146 | GT | 1.8256 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr17--chr19]"] | chr17:50536922-chr19:55685489 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| EPHA1--HSPG2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | EPHA1^ENSG00000146904.9 | chr7:143393671:- | HSPG2^ENSG00000142798.20 | chr1:21850498:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1207:10473:25255 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr7--chr1]"] | chr7:143393671-chr1:21850498 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| EPB41L1--LRP10 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | EPB41L1^ENSG00000088367.23 | chr20:36232732:+ | LRP10^ENSG00000197324.9 | chr14:22872318:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1321:19453:21724 | . | NO_LDAS | 0.0146 | AT | 1.8256 | AC | 0.9183 | ["INTERCHROMOSOMAL[chr20--chr14]"] | chr20:36232732-chr14:22872318 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ENTPD3--UGGT1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ENTPD3^ENSG00000168032.10 | chr3:40416073:+ | UGGT1^ENSG00000136731.13 | chr2:128121279:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1364:24688:16806 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr3--chr2]"] | chr3:40416073-chr2:128121279 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| EMX2--ROR1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | EMX2^ENSG00000170370.12 | chr10:117543445:+ | ROR1^ENSG00000185483.12 | chr1:63774055:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2489:31912:19734 | . | NO_LDAS | 0.0146 | GT | 0.9183 | AG | 1.1589 | ["INTERCHROMOSOMAL[chr10--chr1]"] | chr10:117543445-chr1:63774055 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| EML4--USP16 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | EML4^ENSG00000143924.19 | chr2:42169636:+ | USP16^ENSG00000156256.15 | chr21:29027873:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2219:51563:24709 | . | YES_LDAS | 0.0146 | GT | 1.7819 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr2--chr21]"] | chr2:42169636-chr21:29027873 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ELP4--ZNRD1ASP | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ELP4^ENSG00000109911.19 | chr11:31784416:+ | ZNRD1ASP^ENSG00000204623.9 | chr6:30007593:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1385:43594:25928 | . | NO_LDAS | 0.0146 | AT | 1.5628 | AC | 1.5628 | ["INTERCHROMOSOMAL[chr11--chr6]"] | chr11:31784416-chr6:30007593 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ELF1--KLC1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ELF1^ENSG00000120690.16 | chr13:41019228:- | KLC1^ENSG00000126214.21 | chr14:103700655:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2396:37397:22060 | . | YES_LDAS | 0.0146 | GT | 1.6729 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr13--chr14]"] | chr13:41019228-chr14:103700655 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ELDR--HNRNPUL2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ELDR^ENSG00000280890.1 | chr7:55238273:- | HNRNPUL2^ENSG00000214753.4 | chr11:62726832:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2217:22981:22201 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.231 | ["INTERCHROMOSOMAL[chr7--chr11]"] | chr7:55238273-chr11:62726832 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| EIF5A--MED24 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | EIF5A^ENSG00000132507.18 | chr17:7311651:+ | MED24^ENSG00000008838.20 | chr17:40026828:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1135:28894:16918 | . | NO_LDAS | 0.0073 | GT | 1.9656 | AG | 1.1033 | ["INTRACHROMOSOMAL[chr17:32.71Mb]"] | chr17:7311651-chr17:40026828 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| EIF4A1--EIF4A2 | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | EIF4A1^ENSG00000161960.16 | chr17:7577916:+ | EIF4A2^ENSG00000156976.17 | chr3:186784962:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1307:2432:13513 | . | NO_LDAS | 0.0073 | GT | 1.9219 | AG | 1.5219 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr17--chr3]"] | chr17:7577916-chr3:186784962 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| EIF2AK2--DICER1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | EIF2AK2^ENSG00000055332.19 | chr2:37156908:- | DICER1^ENSG00000100697.15 | chr14:95157406:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2465:9786:20449 | . | YES_LDAS | 0.0146 | GT | 1.231 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr2--chr14]"] | chr2:37156908-chr14:95157406 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| EEF1DP7--EEF1D | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | EEF1DP7^ENSG00000263883.1 | chr17:63636699:+ | EEF1D^ENSG00000104529.17 | chr8:143580681:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1187:20189:1813 | . | NO_LDAS | 0.0146 | GC | 1.5058 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr17--chr8]"] | chr17:63636699-chr8:143580681 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| EEF1A1--RPLP0 | 1 | 0 | 0.14 | 0.0 | ONLY_REF_SPLICE | EEF1A1^ENSG00000156508.19 | chr6:73518698:- | RPLP0^ENSG00000089157.16 | chr12:120197462:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2240:18580:14634 | . | YES_LDAS | 0.002 | GT | 1.9086 | AG | 1.9086 | ["TCGA_StarF2019","CCLE_StarF2019","INTERCHROMOSOMAL[chr6--chr12]"] | chr6:73518698-chr12:120197462 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| EDEM1--EXOG | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | EDEM1^ENSG00000134109.11 | chr3:5188314:+ | EXOG^ENSG00000157036.13 | chr3:38523901:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1152:49297:10444 | . | YES_LDAS | 0.0146 | GT | 1.4295 | AG | 1.8295 | ["INTRACHROMOSOMAL[chr3:33.28Mb]"] | chr3:5188314-chr3:38523901 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| E2F4--ARID3BP1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | E2F4^ENSG00000205250.9 | chr16:67195950:+ | ARID3BP1^ENSG00000227288.3 | chr1:81501788:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2302:13645:11663 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.585 | ["INTERCHROMOSOMAL[chr16--chr1]"] | chr16:67195950-chr1:81501788 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DYRK1A--TTC3 | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | DYRK1A^ENSG00000157540.22 | chr21:37367628:+ | TTC3^ENSG00000182670.13 | chr21:37108392:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2183:33902:28562 | . | YES_LDAS | 0.0073 | GT | 1.5546 | AG | 1.9656 | ["GUO2018CR_TCGA","DEEPEST2019","TumorFusionsNAR2018","ChimerSeq","INTRACHROMOSOMAL[chr21:0.16Mb]"] | chr21:37367628-chr21:37108392 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| DVL2--RCOR1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | DVL2^ENSG00000004975.12 | chr17:7234069:- | RCOR1^ENSG00000089902.10 | chr14:102726468:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1288:5458:14550 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr17--chr14]"] | chr17:7234069-chr14:102726468 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| DVL2--H4C14 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | DVL2^ENSG00000004975.12 | chr17:7226421:- | H4C14^ENSG00000270882.2 | chr1:149833115:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1120:9236:10220 | . | NO_LDAS | 0.0073 | GT | 1.8892 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr17--chr1]"] | chr17:7226421-chr1:149833115 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DUX4--ZNF544 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DUX4^ENSG00000260596.5 | chr4:190175870:+ | ZNF544^ENSG00000198131.14 | chr19:58261426:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2475:7383:11775 | . | NO_LDAS | 0.0146 | GT | 1.6402 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr4--chr19]"] | chr4:190175870-chr19:58261426 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DTX1--DTX2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | DTX1^ENSG00000135144.7 | chr12:113095203:+ | DTX2^ENSG00000091073.19 | chr7:76504356:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1265:13297:23083 | . | YES_LDAS | 0.0146 | GT | 1.7465 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr12--chr7]"] | chr12:113095203-chr7:76504356 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| DRP2--FTH1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DRP2^ENSG00000102385.13 | chrX:101261275:+ | FTH1^ENSG00000167996.16 | chr11:61965112:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2365:49281:29305 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.9219 | ["INTERCHROMOSOMAL[chrX--chr11]"] | chrX:101261275-chr11:61965112 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DOCK8--DOCK6 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | DOCK8^ENSG00000107099.16 | chr9:368135:+ | DOCK6^ENSG00000130158.14 | chr19:11245878:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2185:36523:22649 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr9--chr19]"] | chr9:368135-chr19:11245878 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| DOCK6--ING1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DOCK6^ENSG00000130158.14 | chr19:11227337:- | ING1^ENSG00000153487.13 | chr13:110721307:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2136:48278:17338 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr19--chr13]"] | chr19:11227337-chr13:110721307 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DOCK2--AC009495.3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DOCK2^ENSG00000134516.18 | chr5:170056768:+ | AC009495.3^ENSG00000235192.1 | chr2:165801412:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1256:28644:18389 | . | NO_LDAS | 0.0146 | GT | 1.8256 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr5--chr2]"] | chr5:170056768-chr2:165801412 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DNASE1L1--PLK1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DNASE1L1^ENSG00000013563.14 | chrX:154402723:- | PLK1^ENSG00000166851.15 | chr16:23687477:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1224:51190:21458 | . | NO_LDAS | 0.0146 | GT | 1.6402 | AG | 1.8295 | ["INTERCHROMOSOMAL[chrX--chr16]"] | chrX:154402723-chr16:23687477 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DNAJC10--UBAP2L | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | DNAJC10^ENSG00000077232.19 | chr2:182794001:+ | UBAP2L^ENSG00000143569.19 | chr1:154270260:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1344:27390:27231 | . | NO_LDAS | 0.0073 | GT | 1.6895 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr2--chr1]"] | chr2:182794001-chr1:154270260 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DMWD--AFAP1L2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DMWD^ENSG00000185800.12 | chr19:45785818:- | AFAP1L2^ENSG00000169129.15 | chr10:114313960:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2120:8702:28240 | . | NO_LDAS | 0.0146 | GT | 1.7232 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr19--chr10]"] | chr19:45785818-chr10:114313960 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DMD--CPXM2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DMD^ENSG00000198947.17 | chrX:33020139:- | CPXM2^ENSG00000121898.13 | chr10:123746838:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1384:48035:5764 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.9656 | ["INTERCHROMOSOMAL[chrX--chr10]"] | chrX:33020139-chr10:123746838 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DIP2C--RXRB | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DIP2C^ENSG00000151240.17 | chr10:689660:- | RXRB^ENSG00000204231.11 | chr6:33200337:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2150:34031:1659 | . | NO_LDAS | 0.0146 | GT | 1.5301 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr10--chr6]"] | chr10:689660-chr6:33200337 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DIP2C--CHD5 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DIP2C^ENSG00000151240.17 | chr10:689660:- | CHD5^ENSG00000116254.18 | chr1:6154782:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1134:39929:23364 | . | NO_LDAS | 0.0146 | GT | 1.5301 | AG | 1.231 | ["INTERCHROMOSOMAL[chr10--chr1]"] | chr10:689660-chr1:6154782 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DIDO1--TRBV29-1 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | DIDO1^ENSG00000101191.17 | chr20:62882134:- | TRBV29-1^ENSG00000232869.2 | chr7:142740607:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1169:7618:20617 | . | NO_LDAS | 0.0073 | GT | 1.9086 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr20--chr7]"] | chr20:62882134-chr7:142740607 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DGKQ--IRF7 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DGKQ^ENSG00000145214.14 | chr4:970987:- | IRF7^ENSG00000185507.21 | chr11:612800:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1497:25505:8216 | . | NO_LDAS | 0.0146 | GT | 1.7465 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr4--chr11]"] | chr4:970987-chr11:612800 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DENND4B--MLLT3 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | DENND4B^ENSG00000198837.10 | chr1:153934797:- | MLLT3^ENSG00000171843.17 | chr9:20414378:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2288:33465:4265 | . | YES_LDAS | 0.0073 | GT | 1.5656 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr1--chr9]"] | chr1:153934797-chr9:20414378 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DENND4B--JCAD | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | DENND4B^ENSG00000198837.10 | chr1:153934797:- | JCAD^ENSG00000165757.9 | chr10:30027598:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2288:33465:4265 | . | YES_LDAS | 0.0073 | GT | 1.5656 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr1--chr10]"] | chr1:153934797-chr10:30027598 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DENND4B--GLS | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | DENND4B^ENSG00000198837.10 | chr1:153934797:- | GLS^ENSG00000115419.13 | chr2:190880895:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2396:45293:12224 | . | YES_LDAS | 0.0073 | GT | 1.5656 | AG | 1.585 | ["INTERCHROMOSOMAL[chr1--chr2]"] | chr1:153934797-chr2:190880895 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DEK--KDM1B | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | DEK^ENSG00000124795.17 | chr6:18236452:- | KDM1B^ENSG00000165097.16 | chr6:18205537:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1297:12415:1715 | . | YES_LDAS | 0.0146 | GT | 1.8295 | AG | 1.053 | ["INTRACHROMOSOMAL[chr6:0.00Mb]","LOCAL_INVERSION:-:+:[6]"] | chr6:18236452-chr6:18205537 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| DDX19B--FAU | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DDX19B^ENSG00000157349.17 | chr16:70299146:+ | FAU^ENSG00000149806.11 | chr11:65120791:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1464:21767:28002 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr16--chr11]"] | chr16:70299146-chr11:65120791 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DBI--CNPY4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DBI^ENSG00000155368.16 | chr2:119370802:+ | CNPY4^ENSG00000166997.8 | chr7:100125259:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1463:18782:17675 | . | NO_LDAS | 0.0146 | GT | 1.7056 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr2--chr7]"] | chr2:119370802-chr7:100125259 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DACT3--USP54 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DACT3^ENSG00000197380.11 | chr19:46647980:- | USP54^ENSG00000166348.19 | chr10:73499033:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2432:15869:23364 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr19--chr10]"] | chr19:46647980-chr10:73499033 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| DAAM2--NEAT1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | DAAM2^ENSG00000146122.17 | chr6:39901472:+ | NEAT1^ENSG00000245532.9 | chr11:65423480:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2443:52137:7460 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.4716 | ["INTERCHROMOSOMAL[chr6--chr11]"] | chr6:39901472-chr11:65423480 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CYP4V2--TSC22D2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CYP4V2^ENSG00000145476.16 | chr4:186203693:+ | TSC22D2^ENSG00000196428.12 | chr3:150410647:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1205:11080:16890 | . | NO_LDAS | 0.0146 | GT | 1.8256 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr4--chr3]"] | chr4:186203693-chr3:150410647 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CYP4B1--CYP4X1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CYP4B1^ENSG00000142973.14 | chr1:46815264:+ | CYP4X1^ENSG00000186377.8 | chr1:47029990:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2257:2343:7502 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.7465 | ["GTEx_recurrent_StarF2019","HGNC_GENEFAM","ChimerSeq","INTRACHROMOSOMAL[chr1:0.20Mb]"] | chr1:46815264-chr1:47029990 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| CXCR5--ZBTB34 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CXCR5^ENSG00000160683.5 | chr11:118895650:+ | ZBTB34^ENSG00000177125.5 | chr9:126879850:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1260:38424:28576 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr11--chr9]"] | chr11:118895650-chr9:126879850 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CUL7--TMEM167B | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CUL7^ENSG00000044090.11 | chr6:43037866:- | TMEM167B^ENSG00000215717.7 | chr1:109092890:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1308:48666:22579 | . | NO_LDAS | 0.0146 | GC | 1.8062 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr6--chr1]"] | chr6:43037866-chr1:109092890 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CUL2--PIP4K2A | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CUL2^ENSG00000108094.16 | chr10:35032435:- | PIP4K2A^ENSG00000150867.14 | chr10:22591781:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2308:28514:11243 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr10:12.29Mb]"] | chr10:35032435-chr10:22591781 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CTSD--AC022387.1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CTSD^ENSG00000117984.15 | chr11:1763797:- | AC022387.1^ENSG00000270352.1 | chr10:63658381:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2483:27252:2023 | . | YES_LDAS | 0.0146 | GT | 1.2419 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr11--chr10]"] | chr11:1763797-chr10:63658381 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CSPP1--TPD52 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CSPP1^ENSG00000104218.16 | chr8:67137603:+ | TPD52^ENSG00000076554.15 | chr8:80064593:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2160:10158:6661 | . | NO_LDAS | 0.0146 | GT | 1.6729 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr8:12.84Mb]"] | chr8:67137603-chr8:80064593 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CRYL1--MYCBP2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CRYL1^ENSG00000165475.15 | chr13:20489370:- | MYCBP2^ENSG00000005810.18 | chr13:77296674:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1412:41094:19861 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.3996 | ["INTRACHROMOSOMAL[chr13:56.52Mb]"] | chr13:20489370-chr13:77296674 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CREBL2--EIF2B3 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CREBL2^ENSG00000111269.3 | chr12:12612187:+ | EIF2B3^ENSG00000070785.17 | chr1:44972574:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1484:15457:20127 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr12--chr1]"] | chr12:12612187-chr1:44972574 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| CR2--NBAS | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CR2^ENSG00000117322.18 | chr1:207471499:+ | NBAS^ENSG00000151779.13 | chr2:15238533:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1389:2861:21486 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr1--chr2]"] | chr1:207471499-chr2:15238533 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CPT1B--AL929472.4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CPT1B^ENSG00000205560.13 | chr22:50571154:- | AL929472.4^ENSG00000235673.1 | chr1:37841148:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1176:11404:20645 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr22--chr1]"] | chr22:50571154-chr1:37841148 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CPSF6--GRM8 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CPSF6^ENSG00000111605.18 | chr12:69262562:+ | GRM8^ENSG00000179603.18 | chr7:126445313:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1219:24809:20939 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.8256 | ["DEEPEST2019","TumorFusionsNAR2018","ChimerSeq","TCGA_StarF2019","INTERCHROMOSOMAL[chr12--chr7]"] | chr12:69262562-chr7:126445313 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CPSF1--OR51L1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CPSF1^ENSG00000071894.17 | chr8:144397487:- | OR51L1^ENSG00000176798.3 | chr11:5000522:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1114:39508:25550 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr8--chr11]"] | chr8:144397487-chr11:5000522 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CPPED1--SNX29 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CPPED1^ENSG00000103381.12 | chr16:12781185:- | SNX29^ENSG00000048471.14 | chr16:12277933:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2272:43011:19342 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr16:0.09Mb]","LOCAL_INVERSION:-:+:[85512]"] | chr16:12781185-chr16:12277933 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CPNE8--ANKRD36 | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | CPNE8^ENSG00000139117.14 | chr12:38693657:- | ANKRD36^ENSG00000135976.20 | chr2:97164283:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1141:39961:23111 | . | NO_LDAS | 0.0073 | GT | 1.9219 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr12--chr2]"] | chr12:38693657-chr2:97164283 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| COX6B1P5--COX6B1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | COX6B1P5^ENSG00000249047.2 | chr4:2234457:+ | COX6B1^ENSG00000126267.11 | chr19:35658594:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1127:47526:9393 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr4--chr19]"] | chr4:2234457-chr19:35658594 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| COL4A4--ZDHHC16 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | COL4A4^ENSG00000081052.13 | chr2:227114628:- | ZDHHC16^ENSG00000171307.19 | chr10:97454714:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2438:26241:24288 | . | YES_LDAS | 0.0146 | GT | 1.8256 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr2--chr10]"] | chr2:227114628-chr10:97454714 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| COL1A2--COL5A2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | COL1A2^ENSG00000164692.18 | chr7:94425846:+ | COL5A2^ENSG00000204262.14 | chr2:189062902:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1103:24914:26418 | . | YES_LDAS | 0.0146 | GT | 1.7465 | AG | 1.7819 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr7--chr2]"] | chr7:94425846-chr2:189062902 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| COL1A1--POMT1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | COL1A1^ENSG00000108821.14 | chr17:50196314:- | POMT1^ENSG00000130714.18 | chr9:131511098:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1325:36903:1673 | . | NO_LDAS | 0.0146 | GT | 1.4566 | AG | 1.6049 | ["INTERCHROMOSOMAL[chr17--chr9]"] | chr17:50196314-chr9:131511098 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| COL1A1--BRD9 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | COL1A1^ENSG00000108821.14 | chr17:50195923:- | BRD9^ENSG00000028310.18 | chr5:866156:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1110:20643:9688 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr17--chr5]"] | chr17:50195923-chr5:866156 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| COL18A1--FUS | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | COL18A1^ENSG00000182871.16 | chr21:45473981:+ | FUS^ENSG00000089280.19 | chr16:31183858:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1226:35439:28226 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr21--chr16]"] | chr21:45473981-chr16:31183858 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CNOT3--AC025614.2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CNOT3^ENSG00000088038.19 | chr19:54148747:+ | AC025614.2^ENSG00000287774.1 | chr3:30304671:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2188:3071:11453 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr19--chr3]"] | chr19:54148747-chr3:30304671 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CMSS1--CRYBG3 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CMSS1^ENSG00000184220.12 | chr3:99818043:+ | CRYBG3^ENSG00000080200.10 | chr3:97864217:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1180:25132:17549 | . | YES_LDAS | 0.0146 | GT | 1.5656 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr3:1.87Mb]"] | chr3:99818043-chr3:97864217 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CLTC--MIR183 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CLTC^ENSG00000141367.12 | chr17:59647551:+ | MIR183^ENSG00000207691.1 | chr7:129774958:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1135:40180:4293 | . | NO_LDAS | 0.0146 | GT | 1.4295 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr17--chr7]"] | chr17:59647551-chr7:129774958 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CLN5--SEPTIN2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CLN5^ENSG00000102805.16 | chr13:76990959:+ | SEPTIN2^ENSG00000168385.18 | chr2:241335975:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1186:12860:1785 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.1033 | ["INTERCHROMOSOMAL[chr13--chr2]"] | chr13:76990959-chr2:241335975 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CLIC6--TSC2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CLIC6^ENSG00000159212.13 | chr21:34669826:+ | TSC2^ENSG00000103197.18 | chr16:2062500:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1410:20634:15755 | . | NO_LDAS | 0.0146 | GT | 1.7465 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr21--chr16]"] | chr21:34669826-chr16:2062500 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CLIC3--MSL3P1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CLIC3^ENSG00000169583.13 | chr9:136994664:- | MSL3P1^ENSG00000224287.2 | chr2:233868415:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1130:37316:17352 | . | NO_LDAS | 0.0146 | GT | 1.4256 | AG | 1.3996 | ["INTERCHROMOSOMAL[chr9--chr2]"] | chr9:136994664-chr2:233868415 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CILP--TECR | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CILP^ENSG00000138615.6 | chr15:65197338:- | TECR^ENSG00000099797.15 | chr19:14564182:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2418:20958:19847 | . | NO_LDAS | 0.0146 | GC | 1.6895 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr15--chr19]"] | chr15:65197338-chr19:14564182 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CICP1--KIF7 | 1 | 0 | 0.07 | 0.0 | INCL_NON_REF_SPLICE | CICP1^ENSG00000233652.1 | chrY:25389016:+ | KIF7^ENSG00000166813.16 | chr15:89652891:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2135:27891:15405 | . | NO_LDAS | 0.001 | GT | 1.8892 | AG | 1.7819 | ["INTERCHROMOSOMAL[chrY--chr15]"] | chrY:25389016-chr15:89652891 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CHSY1--AC090907.2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CHSY1^ENSG00000131873.7 | chr15:101235082:- | AC090907.2^ENSG00000259755.1 | chr15:101065664:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1129:40714:14242 | . | YES_LDAS | 0.0146 | GT | 1.8323 | AG | 1.9329 | ["GTEx_recurrent_StarF2019","INTRACHROMOSOMAL[chr15:0.09Mb]","NEIGHBORS[89661]"] | chr15:101235082-chr15:101065664 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| CHMP3--MTRNR2L3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CHMP3^ENSG00000115561.16 | chr2:86542292:- | MTRNR2L3^ENSG00000256222.3 | chr20:57358555:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1314:49961:8090 | . | NO_LDAS | 0.0146 | AT | 1.8062 | AC | 1.6402 | ["INTERCHROMOSOMAL[chr2--chr20]"] | chr2:86542292-chr20:57358555 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CHD3--CYP2J2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CHD3^ENSG00000170004.17 | chr17:7910591:+ | CYP2J2^ENSG00000134716.11 | chr1:59926623:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2217:49589:20057 | . | NO_LDAS | 0.0146 | GT | 1.3753 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr17--chr1]"] | chr17:7910591-chr1:59926623 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CEPT1--ATM | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CEPT1^ENSG00000134255.14 | chr1:111174963:+ | ATM^ENSG00000149311.19 | chr11:108243953:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2154:8532:3816 | . | YES_LDAS | 0.0146 | GT | 1.8295 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr1--chr11]"] | chr1:111174963-chr11:108243953 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CEP164P1--RPL30 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CEP164P1^ENSG00000226937.9 | chr10:45075912:- | RPL30^ENSG00000156482.11 | chr8:98045001:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2241:33587:7642 | . | NO_LDAS | 0.0146 | GT | 1.4295 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr10--chr8]"] | chr10:45075912-chr8:98045001 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CEACAM5--CEACAM4 | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | CEACAM5^ENSG00000105388.16 | chr19:41708795:+ | CEACAM4^ENSG00000105352.10 | chr19:41625960:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2324:8184:3186 | . | NO_LDAS | 0.0073 | GT | 1.8892 | AG | 1.5219 | ["DGD_PARALOGS","HGNC_GENEFAM","INTRACHROMOSOMAL[chr19:0.08Mb]","LOCAL_INVERSION:+:-:[81511]"] | chr19:41708795-chr19:41625960 | False | 0 | Excluded annotation pattern: DGD_PARALOGS | FAIL | 1 | |
| CEACAM1--CEACAMP4 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CEACAM1^ENSG00000079385.23 | chr19:42528311:- | CEACAMP4^ENSG00000230681.1 | chr19:43303536:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2486:44896:22383 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.5219 | ["INTRACHROMOSOMAL[chr19:0.74Mb]"] | chr19:42528311-chr19:43303536 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CDV3--ARID4A | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CDV3^ENSG00000091527.16 | chr3:133575115:+ | ARID4A^ENSG00000032219.19 | chr14:58323512:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1466:42429:1518 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.5628 | ["INTERCHROMOSOMAL[chr3--chr14]"] | chr3:133575115-chr14:58323512 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CDK13--ACER3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CDK13^ENSG00000065883.16 | chr7:39951852:+ | ACER3^ENSG00000078124.13 | chr11:76926623:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1283:16144:22411 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr7--chr11]"] | chr7:39951852-chr11:76926623 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CDIN1--RACK1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CDIN1^ENSG00000186073.14 | chr15:36746951:+ | RACK1^ENSG00000204628.12 | chr5:181241639:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1272:7561:18025 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr15--chr5]"] | chr15:36746951-chr5:181241639 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CDC42SE2--MRPS6 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CDC42SE2^ENSG00000158985.14 | chr5:131264166:+ | MRPS6^ENSG00000243927.6 | chr21:34125341:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1456:47809:14144 | . | YES_LDAS | 0.0146 | GT | 1.5219 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr5--chr21]"] | chr5:131264166-chr21:34125341 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CD3G--CCSAP | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CD3G^ENSG00000160654.11 | chr11:118344478:+ | CCSAP^ENSG00000154429.11 | chr1:229327006:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2436:30084:18810 | . | YES_LDAS | 0.0146 | GT | 1.7465 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr11--chr1]"] | chr11:118344478-chr1:229327006 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CD19--SF3A3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CD19^ENSG00000177455.15 | chr16:28937136:+ | SF3A3^ENSG00000183431.12 | chr1:37969677:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2392:44840:2359 | . | NO_LDAS | 0.0146 | GT | 1.5329 | AG | 1.2867 | ["INTERCHROMOSOMAL[chr16--chr1]"] | chr16:28937136-chr1:37969677 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CCZ1--HP1BP3 | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | CCZ1^ENSG00000122674.12 | chr7:5900932:+ | HP1BP3^ENSG00000127483.19 | chr1:20773610:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2329:18571:6465 | . | NO_LDAS | 0.0073 | GT | 1.4566 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr7--chr1]"] | chr7:5900932-chr1:20773610 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CCL19--SH3BP5-AS1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CCL19^ENSG00000172724.12 | chr9:34690300:- | SH3BP5-AS1^ENSG00000224660.2 | chr3:15260505:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1442:21985:7390 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr9--chr3]"] | chr9:34690300-chr3:15260505 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CCDC91--COTL1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CCDC91^ENSG00000123106.10 | chr12:28190641:+ | COTL1^ENSG00000103187.8 | chr16:84590262:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1423:23482:3929 | . | YES_LDAS | 0.0146 | GT | 1.231 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr12--chr16]"] | chr12:28190641-chr16:84590262 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CCDC88C--ILDR2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CCDC88C^ENSG00000015133.19 | chr14:91338005:- | ILDR2^ENSG00000143195.13 | chr1:166920802:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2290:8661:2443 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr14--chr1]"] | chr14:91338005-chr1:166920802 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CCDC88B--SLC44A2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CCDC88B^ENSG00000168071.22 | chr11:64353240:+ | SLC44A2^ENSG00000129353.15 | chr19:10644170:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1390:34582:4994 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr11--chr19]"] | chr11:64353240-chr19:10644170 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CCAR2--SLC7A11-AS1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CCAR2^ENSG00000158941.16 | chr8:22613136:+ | SLC7A11-AS1^ENSG00000250033.5 | chr4:138098420:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2161:46668:5806 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr8--chr4]"] | chr8:22613136-chr4:138098420 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CATSPERG--CARD19 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CATSPERG^ENSG00000099338.23 | chr19:38361861:+ | CARD19^ENSG00000165233.18 | chr9:93112218:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1251:29590:3102 | . | YES_LDAS | 0.0146 | GT | 1.9899 | AG | 1.9219 | ["INTERCHROMOSOMAL[chr19--chr9]"] | chr19:38361861-chr9:93112218 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CASP8AP2--MTRNR2L3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CASP8AP2^ENSG00000118412.13 | chr6:89863120:+ | MTRNR2L3^ENSG00000256222.3 | chr20:57358555:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1391:36604:19566 | . | NO_LDAS | 0.0146 | AT | 1.7968 | AC | 1.6402 | ["INTERCHROMOSOMAL[chr6--chr20]"] | chr6:89863120-chr20:57358555 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CARMIL1--PTCH1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CARMIL1^ENSG00000079691.18 | chr6:25435604:+ | PTCH1^ENSG00000185920.16 | chr9:95485874:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1177:15263:26180 | . | YES_LDAS | 0.0146 | GT | 1.7819 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr6--chr9]"] | chr6:25435604-chr9:95485874 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CARD8--SAMHD1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CARD8^ENSG00000105483.18 | chr19:48221730:- | SAMHD1^ENSG00000101347.10 | chr20:36893066:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1463:44589:13163 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr19--chr20]"] | chr19:48221730-chr20:36893066 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CAPZA1--CAPZA2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CAPZA1^ENSG00000116489.13 | chr1:112659779:+ | CAPZA2^ENSG00000198898.14 | chr7:116912069:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2425:48488:4503 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr1--chr7]"] | chr1:112659779-chr7:116912069 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CAMK1D--LINC02161 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CAMK1D^ENSG00000183049.13 | chr10:12553356:+ | LINC02161^ENSG00000250437.1 | chr5:89677450:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1111:1995:8833 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr10--chr5]"] | chr10:12553356-chr5:89677450 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CAMK1D--AOAH | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | CAMK1D^ENSG00000183049.13 | chr10:12349910:+ | AOAH^ENSG00000136250.12 | chr7:36637910:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2173:19745:19678 | . | NO_LDAS | 0.0146 | GT | 1.8256 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr10--chr7]"] | chr10:12349910-chr7:36637910 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| CACNA1I--LARP1B | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | CACNA1I^ENSG00000100346.18 | chr22:39686162:+ | LARP1B^ENSG00000138709.19 | chr4:128062003:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2401:2383:25367 | . | NO_LDAS | 0.0073 | GC | 1.053 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr22--chr4]"] | chr22:39686162-chr4:128062003 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CACNA1F--ERCC2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CACNA1F^ENSG00000102001.13 | chrX:49217993:- | ERCC2^ENSG00000104884.16 | chr19:45363804:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1320:42032:23980 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.5546 | ["INTERCHROMOSOMAL[chrX--chr19]"] | chrX:49217993-chr19:45363804 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| CACNA1A--GSTP1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | CACNA1A^ENSG00000141837.22 | chr19:13371259:- | GSTP1^ENSG00000084207.18 | chr11:67585138:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1196:9082:1631 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr19--chr11]"] | chr19:13371259-chr11:67585138 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| C1orf43--STX8 | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | C1orf43^ENSG00000143612.21 | chr1:154213182:- | STX8^ENSG00000170310.15 | chr17:9378653:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1173:16347:2247 | . | YES_LDAS | 0.0073 | GT | 1.9329 | AG | 1.9219 | ["INTERCHROMOSOMAL[chr1--chr17]"] | chr1:154213182-chr17:9378653 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| C19orf12--LHX6 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | C19orf12^ENSG00000131943.18 | chr19:29699374:- | LHX6^ENSG00000106852.15 | chr9:122228121:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1498:2537:26951 | . | YES_LDAS | 0.0146 | GT | 1.7232 | AG | 0.8366 | ["INTERCHROMOSOMAL[chr19--chr9]"] | chr19:29699374-chr9:122228121 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| C17orf77--TBC1D10A | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | C17orf77^ENSG00000182352.8 | chr17:74593630:+ | TBC1D10A^ENSG00000099992.16 | chr22:30307865:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1168:12650:10837 | . | YES_LDAS | 0.0146 | GT | 1.7465 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr17--chr22]"] | chr17:74593630-chr22:30307865 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| C17orf77--AC145207.2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | C17orf77^ENSG00000182352.8 | chr17:74584803:+ | AC145207.2^ENSG00000262413.1 | chr17:81868403:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1164:36046:27595 | . | NO_LDAS | 0.0146 | GT | 1.3996 | AG | 1.5546 | ["INTRACHROMOSOMAL[chr17:7.27Mb]"] | chr17:74584803-chr17:81868403 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| C12orf65--THEM4 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | C12orf65^ENSG00000130921.9 | chr12:123248480:+ | THEM4^ENSG00000159445.13 | chr1:151895194:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1470:28312:6353 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr12--chr1]"] | chr12:123248480-chr1:151895194 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| C11orf80--CMTR2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | C11orf80^ENSG00000173715.18 | chr11:66759096:+ | CMTR2^ENSG00000180917.18 | chr16:71281439:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2242:41280:8384 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.371 | ["INTERCHROMOSOMAL[chr11--chr16]"] | chr11:66759096-chr16:71281439 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| BZW2--HERPUD2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | BZW2^ENSG00000136261.15 | chr7:16646288:+ | HERPUD2^ENSG00000122557.11 | chr7:35638472:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2492:2691:12924 | . | YES_LDAS | 0.0146 | GT | 1.9219 | AG | 1.7232 | ["INTRACHROMOSOMAL[chr7:18.93Mb]"] | chr7:16646288-chr7:35638472 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| BMS1--AL845331.1 | 1 | 0 | 0.07 | 0.0 | INCL_NON_REF_SPLICE | BMS1^ENSG00000165733.8 | chr10:42823784:+ | AL845331.1^ENSG00000259916.1 | chr2:94588497:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1280:32527:4937 | . | NO_LDAS | 0.001 | GT | 1.9656 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr10--chr2]"] | chr10:42823784-chr2:94588497 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| BIRC6--ST3GAL5 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | BIRC6^ENSG00000115760.14 | chr2:32431090:+ | ST3GAL5^ENSG00000115525.18 | chr2:85849998:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2201:35795:15391 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.8062 | ["INTRACHROMOSOMAL[chr2:53.22Mb]"] | chr2:32431090-chr2:85849998 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| BHLHE40--TRANK1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | BHLHE40^ENSG00000134107.5 | chr3:4981515:+ | TRANK1^ENSG00000168016.15 | chr3:36864480:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2266:33862:24597 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.9329 | ["INTRACHROMOSOMAL[chr3:31.84Mb]"] | chr3:4981515-chr3:36864480 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| BEST1--CYBA | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | BEST1^ENSG00000167995.17 | chr11:61962242:+ | CYBA^ENSG00000051523.11 | chr16:88646197:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1264:35318:16273 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.5058 | ["INTERCHROMOSOMAL[chr11--chr16]"] | chr11:61962242-chr16:88646197 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| BCL11B--THRB | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | BCL11B^ENSG00000127152.18 | chr14:99173324:- | THRB^ENSG00000151090.20 | chr3:24119534:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2258:27236:14886 | . | NO_LDAS | 0.0146 | GC | 1.4295 | AG | 1.4716 | ["INTERCHROMOSOMAL[chr14--chr3]"] | chr14:99173324-chr3:24119534 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| BCAR1--NEDD9 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | BCAR1^ENSG00000050820.17 | chr16:75234889:- | NEDD9^ENSG00000111859.17 | chr6:11188307:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2350:24429:9463 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.5301 | ["HGNC_GENEFAM","INTERCHROMOSOMAL[chr16--chr6]"] | chr16:75234889-chr6:11188307 | False | 0 | Excluded annotation pattern: HGNC_GENEFAM | FAIL | 1 | |
| BCAM--RN7SL865P | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | BCAM^ENSG00000187244.12 | chr19:44814288:+ | RN7SL865P^ENSG00000240205.3 | chr12:115717762:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2262:29032:13317 | . | NO_LDAS | 0.0073 | GT | 1.7056 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr19--chr12]"] | chr19:44814288-chr12:115717762 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| BACE1--BLCAP | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | BACE1^ENSG00000186318.17 | chr11:117290564:- | BLCAP^ENSG00000166619.15 | chr20:37524389:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2218:19267:17815 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr11--chr20]"] | chr11:117290564-chr20:37524389 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| B4GALT1--DPYD | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | B4GALT1^ENSG00000086062.13 | chr9:33166758:- | DPYD^ENSG00000188641.14 | chr1:97515941:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1237:30270:10136 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr9--chr1]"] | chr9:33166758-chr1:97515941 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| B3GALT6--ZXDB | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | B3GALT6^ENSG00000176022.7 | chr1:1232311:+ | ZXDB^ENSG00000198455.5 | chrX:57592294:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2109:10522:8272 | . | NO_LDAS | 0.0073 | GC | 1.1589 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr1--chrX]"] | chr1:1232311-chrX:57592294 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AZIN1--XRN2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AZIN1^ENSG00000155096.14 | chr8:102843547:- | XRN2^ENSG00000088930.8 | chr20:21333937:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1479:22422:22103 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr8--chr20]"] | chr8:102843547-chr20:21333937 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AVL9--BBS9 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AVL9^ENSG00000105778.19 | chr7:32495802:+ | BBS9^ENSG00000122507.21 | chr7:33336441:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2265:2691:29039 | . | YES_LDAS | 0.0146 | GT | 1.7819 | AG | 1.585 | ["TCGA_StarF2019","INTRACHROMOSOMAL[chr7:0.52Mb]"] | chr7:32495802-chr7:33336441 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AUTS2--CPEB4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AUTS2^ENSG00000158321.18 | chr7:69598407:+ | CPEB4^ENSG00000113742.14 | chr5:173888409:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1288:48642:11159 | . | NO_LDAS | 0.0146 | GT | 0.9183 | AG | 1.1589 | ["INTERCHROMOSOMAL[chr7--chr5]"] | chr7:69598407-chr5:173888409 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ATP8B1--NEDD4L | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ATP8B1^ENSG00000081923.15 | chr18:57802998:- | NEDD4L^ENSG00000049759.20 | chr18:58165788:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1239:19745:12896 | . | NO_LDAS | 0.0146 | GT | 1.5301 | AG | 1.9656 | ["INTRACHROMOSOMAL[chr18:0.24Mb]"] | chr18:57802998-chr18:58165788 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ATP5F1D--VRK1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ATP5F1D^ENSG00000099624.8 | chr19:1241991:+ | VRK1^ENSG00000100749.9 | chr14:96884915:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2260:15991:11159 | . | NO_LDAS | 0.0146 | GT | 1.7232 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr19--chr14]"] | chr19:1241991-chr14:96884915 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ATP5F1D--MYH13 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ATP5F1D^ENSG00000099624.8 | chr19:1241991:+ | MYH13^ENSG00000006788.14 | chr17:10330523:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1416:8524:5400 | . | NO_LDAS | 0.0146 | GT | 1.7232 | AG | 1.8295 | ["INTERCHROMOSOMAL[chr19--chr17]"] | chr19:1241991-chr17:10330523 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ATP5F1B--CALR | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ATP5F1B^ENSG00000110955.9 | chr12:56645220:- | CALR^ENSG00000179218.15 | chr19:12938587:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1204:42097:5288 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr12--chr19]"] | chr12:56645220-chr19:12938587 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ATP10B--THBS3 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | ATP10B^ENSG00000118322.14 | chr5:160632329:- | THBS3^ENSG00000169231.13 | chr1:155198220:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1334:8896:16161 | . | NO_LDAS | 0.0073 | GT | 1.9656 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr5--chr1]"] | chr5:160632329-chr1:155198220 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ATG2B--EMP1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ATG2B^ENSG00000066739.12 | chr14:96343207:- | EMP1^ENSG00000134531.10 | chr12:13211488:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1332:26427:17128 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.1033 | ["INTERCHROMOSOMAL[chr14--chr12]"] | chr14:96343207-chr12:13211488 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ATG13--SLC25A42 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ATG13^ENSG00000175224.16 | chr11:46630100:+ | SLC25A42^ENSG00000181035.14 | chr19:19096091:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2152:2222:6311 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr11--chr19]"] | chr11:46630100-chr19:19096091 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ASB16--NLRC5 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ASB16^ENSG00000161664.7 | chr17:44170501:+ | NLRC5^ENSG00000140853.16 | chr16:57028084:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1411:28158:19987 | . | NO_LDAS | 0.0146 | GT | 1.3383 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr17--chr16]"] | chr17:44170501-chr16:57028084 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ARRB1--SBNO2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ARRB1^ENSG00000137486.17 | chr11:75265261:- | SBNO2^ENSG00000064932.16 | chr19:1123606:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1277:2262:2822 | . | NO_LDAS | 0.0146 | GT | 1.1589 | AG | 1.6402 | ["INTERCHROMOSOMAL[chr11--chr19]"] | chr11:75265261-chr19:1123606 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ARRB1--POLR3E | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ARRB1^ENSG00000137486.17 | chr11:75265261:- | POLR3E^ENSG00000058600.16 | chr16:22325937:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2172:17787:29459 | . | NO_LDAS | 0.0146 | GT | 1.1589 | AG | 1.3996 | ["INTERCHROMOSOMAL[chr11--chr16]"] | chr11:75265261-chr16:22325937 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ARRB1--KRI1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ARRB1^ENSG00000137486.17 | chr11:75265261:- | KRI1^ENSG00000129347.21 | chr19:10561237:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2101:22908:9912 | . | NO_LDAS | 0.0146 | GT | 1.1589 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr11--chr19]"] | chr11:75265261-chr19:10561237 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ARRB1--ITPRID2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ARRB1^ENSG00000137486.17 | chr11:75265261:- | ITPRID2^ENSG00000138434.17 | chr2:181892226:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2430:24307:8777 | . | NO_LDAS | 0.0146 | GT | 1.1589 | AG | 1.3996 | ["INTERCHROMOSOMAL[chr11--chr2]"] | chr11:75265261-chr2:181892226 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ARPC1B--C9orf116 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ARPC1B^ENSG00000130429.15 | chr7:99392876:+ | C9orf116^ENSG00000160345.13 | chr9:135500287:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2205:21985:15629 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr7--chr9]"] | chr7:99392876-chr9:135500287 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ARMH3--BACH2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ARMH3^ENSG00000120029.13 | chr10:101956597:- | BACH2^ENSG00000112182.15 | chr6:89951862:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1384:28571:28324 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr10--chr6]"] | chr10:101956597-chr6:89951862 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ARL4C--LAMA5 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ARL4C^ENSG00000188042.8 | chr2:234496612:- | LAMA5^ENSG00000130702.15 | chr20:62311286:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1333:8087:4811 | . | NO_LDAS | 0.0146 | GT | 1.3383 | AG | 1.5546 | ["INTERCHROMOSOMAL[chr2--chr20]"] | chr2:234496612-chr20:62311286 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ARHGAP35--YWHAE | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ARHGAP35^ENSG00000160007.19 | chr19:46861209:+ | YWHAE^ENSG00000108953.17 | chr17:1365058:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2209:7828:9407 | . | YES_LDAS | 0.0146 | GT | 1.6895 | AG | 1.7819 | ["INTERCHROMOSOMAL[chr19--chr17]"] | chr19:46861209-chr17:1365058 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ARHGAP35--TP73 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | ARHGAP35^ENSG00000160007.19 | chr19:47000612:+ | TP73^ENSG00000078900.15 | chr1:3733812:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1176:37373:16301 | . | NO_LDAS | 0.0073 | GT | 1.5546 | AG | 1.5301 | ["INTERCHROMOSOMAL[chr19--chr1]"] | chr19:47000612-chr1:3733812 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ARHGAP35--NR2F2 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | ARHGAP35^ENSG00000160007.19 | chr19:47000612:+ | NR2F2^ENSG00000185551.15 | chr15:96331529:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1176:37373:16301 | . | NO_LDAS | 0.0073 | GT | 1.5546 | AG | 1.231 | ["INTERCHROMOSOMAL[chr19--chr15]"] | chr19:47000612-chr15:96331529 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ARHGAP27--FOXP1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ARHGAP27^ENSG00000159314.11 | chr17:45405676:- | FOXP1^ENSG00000114861.23 | chr3:71582084:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1108:7674:4377 | . | NO_LDAS | 0.0146 | GT | 1.4295 | AG | 1.4256 | ["INTERCHROMOSOMAL[chr17--chr3]"] | chr17:45405676-chr3:71582084 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ARHGAP25--SESTD1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ARHGAP25^ENSG00000163219.12 | chr2:68735260:+ | SESTD1^ENSG00000187231.14 | chr2:179191866:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2138:33522:15909 | . | YES_LDAS | 0.0146 | GT | 1.8323 | AG | 1.7465 | ["INTRACHROMOSOMAL[chr2:110.27Mb]"] | chr2:68735260-chr2:179191866 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| APBB1IP--CLIC4 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | APBB1IP^ENSG00000077420.16 | chr10:26503274:+ | CLIC4^ENSG00000169504.15 | chr1:24745614:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1307:48731:17591 | . | NO_LDAS | 0.0146 | GT | 1.8323 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr10--chr1]"] | chr10:26503274-chr1:24745614 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ANXA2P2--ASPHD2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ANXA2P2^ENSG00000231991.4 | chr9:33624802:+ | ASPHD2^ENSG00000128203.7 | chr22:26443097:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1379:15748:13709 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr9--chr22]"] | chr9:33624802-chr22:26443097 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ANTXR2--FBXO8 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ANTXR2^ENSG00000163297.18 | chr4:79977621:- | FBXO8^ENSG00000164117.14 | chr4:174263100:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1184:34428:11453 | . | YES_LDAS | 0.0146 | GT | 1.5628 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr4:94.11Mb]"] | chr4:79977621-chr4:174263100 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ANO8--TNFRSF11A | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ANO8^ENSG00000074855.11 | chr19:17327438:- | TNFRSF11A^ENSG00000141655.17 | chr18:62387033:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2235:45972:4713 | . | NO_LDAS | 0.0146 | GT | 1.7968 | AG | 1.5329 | ["INTERCHROMOSOMAL[chr19--chr18]"] | chr19:17327438-chr18:62387033 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ANO6--CLASP1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ANO6^ENSG00000177119.17 | chr12:45302093:+ | CLASP1^ENSG00000074054.20 | chr2:121606180:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1112:3775:27469 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr12--chr2]"] | chr12:45302093-chr2:121606180 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ANKRD44--CCDC141 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ANKRD44^ENSG00000065413.20 | chr2:197025196:- | CCDC141^ENSG00000163492.15 | chr2:178978675:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2407:20804:16638 | . | YES_LDAS | 0.0146 | GT | 1.7465 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr2:17.92Mb]"] | chr2:197025196-chr2:178978675 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ANKRD36--SIDT2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ANKRD36^ENSG00000135976.20 | chr2:97204096:+ | SIDT2^ENSG00000149577.16 | chr11:117188322:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2342:30448:2962 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr2--chr11]"] | chr2:97204096-chr11:117188322 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ANKRD26--ANKRD36BP2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ANKRD26^ENSG00000107890.17 | chr10:27053320:- | ANKRD36BP2^ENSG00000230006.7 | chr2:88782734:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1489:35625:23083 | . | NO_LDAS | 0.0146 | GT | 1.6895 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr10--chr2]"] | chr10:27053320-chr2:88782734 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ANKLE2--TMEM132B | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | ANKLE2^ENSG00000176915.15 | chr12:132742187:- | TMEM132B^ENSG00000139364.10 | chr12:125587205:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1169:5296:13849 | . | YES_LDAS | 0.0073 | GT | 0.9968 | AG | 1.2867 | ["INTRACHROMOSOMAL[chr12:7.06Mb]"] | chr12:132742187-chr12:125587205 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AMOTL1--GNAI3 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AMOTL1^ENSG00000166025.18 | chr11:94768560:+ | GNAI3^ENSG00000065135.12 | chr1:109573737:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2118:8888:19510 | . | YES_LDAS | 0.0146 | GT | 1.8892 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr11--chr1]"] | chr11:94768560-chr1:109573737 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ALS2--ERCC5 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ALS2^ENSG00000003393.16 | chr2:201753146:- | ERCC5^ENSG00000134899.23 | chr13:102853757:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2276:13426:10332 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.5628 | ["INTERCHROMOSOMAL[chr2--chr13]"] | chr2:201753146-chr13:102853757 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AL645638.1--UBE2D2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AL645638.1^ENSG00000232576.2 | chrX:88908526:+ | UBE2D2^ENSG00000131508.16 | chr5:139614861:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1284:6461:18277 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.9086 | ["INTERCHROMOSOMAL[chrX--chr5]"] | chrX:88908526-chr5:139614861 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AL390957.1--POU2F1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AL390957.1^ENSG00000285280.2 | chr1:192925612:- | POU2F1^ENSG00000143190.23 | chr1:167332470:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1316:28506:26699 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.7232 | ["INTRACHROMOSOMAL[chr1:24.74Mb]"] | chr1:192925612-chr1:167332470 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AL365258.2--RPL24P7 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AL365258.2^ENSG00000235582.2 | chr1:197735996:+ | RPL24P7^ENSG00000215016.2 | chr3:23134667:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1123:22843:18768 | . | NO_LDAS | 0.0146 | GT | 1.5546 | AG | 1.8892 | ["TCGA_StarF2019","INTERCHROMOSOMAL[chr1--chr3]"] | chr1:197735996-chr3:23134667 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AL354993.1--VPS13C | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | AL354993.1^ENSG00000231703.2 | chr20:53399565:- | VPS13C^ENSG00000129003.19 | chr15:61910305:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1339:7553:6773 | . | NO_LDAS | 0.0048 | GT | 1.7232 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr20--chr15]"] | chr20:53399565-chr15:61910305 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AL354821.1--KLHDC3 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AL354821.1^ENSG00000274090.1 | chr13:55536181:- | KLHDC3^ENSG00000124702.18 | chr6:43019288:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1261:49411:28072 | . | NO_LDAS | 0.0146 | GT | 1.6402 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr13--chr6]"] | chr13:55536181-chr6:43019288 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AL121761.1--RPL19 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AL121761.1^ENSG00000268628.2 | chr20:19757816:- | RPL19^ENSG00000108298.12 | chr17:39203047:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1278:6784:28758 | . | NO_LDAS | 0.0146 | GT | 1.5058 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr20--chr17]"] | chr20:19757816-chr17:39203047 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AL049874.2--AC004223.1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AL049874.2^ENSG00000244756.1 | chr14:60572181:- | AC004223.1^ENSG00000243423.1 | chr17:35076852:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2303:51999:28212 | . | YES_LDAS | 0.0146 | GT | 1.5058 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr14--chr17]"] | chr14:60572181-chr17:35076852 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AL034546.1--RAP1GDS1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AL034546.1^ENSG00000280395.1 | chr22:50095054:+ | RAP1GDS1^ENSG00000138698.15 | chr4:98261478:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2120:32009:3480 | . | YES_LDAS | 0.0146 | GT | 0.7219 | AG | 1.5329 | ["INTERCHROMOSOMAL[chr22--chr4]"] | chr22:50095054-chr4:98261478 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AL008729.1--STX8 | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | AL008729.1^ENSG00000215022.7 | chr6:13281429:- | STX8^ENSG00000170310.15 | chr17:9378653:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1173:16347:2247 | . | YES_LDAS | 0.0073 | GT | 1.9329 | AG | 1.9219 | ["INTERCHROMOSOMAL[chr6--chr17]"] | chr6:13281429-chr17:9378653 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AKR1B1--CLASRP | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AKR1B1^ENSG00000085662.14 | chr7:134451366:- | CLASRP^ENSG00000104859.15 | chr19:45064035:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2326:17787:26068 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr7--chr19]"] | chr7:134451366-chr19:45064035 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AKNA--SCAF1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AKNA^ENSG00000106948.17 | chr9:114361704:- | SCAF1^ENSG00000126461.15 | chr19:49653513:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1306:14340:10767 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr9--chr19]"] | chr9:114361704-chr19:49653513 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AK8--SURF4 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AK8^ENSG00000165695.10 | chr9:132854857:- | SURF4^ENSG00000148248.14 | chr9:133363759:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2104:29558:3859 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9329 | ["INTRACHROMOSOMAL[chr9:0.48Mb]"] | chr9:132854857-chr9:133363759 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AIFM2--SAR1A | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AIFM2^ENSG00000042286.15 | chr10:70114920:- | SAR1A^ENSG00000079332.15 | chr10:70161931:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1290:14357:1603 | . | YES_LDAS | 0.0146 | GT | 1.8256 | AG | 1.7819 | ["INTRACHROMOSOMAL[chr10:0.01Mb]","LOCAL_REARRANGEMENT:-:[14355]"] | chr10:70114920-chr10:70161931 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AHCYP3--LTF | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AHCYP3^ENSG00000233955.1 | chr2:104396110:- | LTF^ENSG00000012223.13 | chr3:46459794:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2389:11630:12322 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr2--chr3]"] | chr2:104396110-chr3:46459794 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AHCYL2--ANKRD44 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AHCYL2^ENSG00000158467.16 | chr7:129225439:+ | ANKRD44^ENSG00000065413.20 | chr2:197187106:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2270:30553:13933 | . | NO_LDAS | 0.0146 | GT | 1.8062 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr7--chr2]"] | chr7:129225439-chr2:197187106 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AGPS--STAM2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AGPS^ENSG00000018510.18 | chr2:177420358:+ | STAM2^ENSG00000115145.10 | chr2:152150229:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1453:15133:27497 | . | YES_LDAS | 0.0146 | GT | 1.7819 | AG | 1.6729 | ["INTRACHROMOSOMAL[chr2:25.22Mb]"] | chr2:177420358-chr2:152150229 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AGAP4--RET | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AGAP4^ENSG00000188234.14 | chr10:45825938:- | RET^ENSG00000165731.20 | chr10:43112894:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2380:48310:19580 | . | NO_LDAS | 0.0146 | GC | 1.9329 | AG | 1.6402 | ["INTRACHROMOSOMAL[chr10:2.70Mb]"] | chr10:45825938-chr10:43112894 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AGAP3--TSNARE1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AGAP3^ENSG00000133612.19 | chr7:151087072:+ | TSNARE1^ENSG00000171045.16 | chr8:142315089:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1367:9365:9015 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr7--chr8]"] | chr7:151087072-chr8:142315089 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AGAP10P--AC022400.4 | 1 | 0 | 0.12 | 0.0 | INCL_NON_REF_SPLICE | AGAP10P^ENSG00000230869.1 | chr10:45684520:+ | AC022400.4^ENSG00000272140.2 | chr10:73713332:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1201:28652:28997 | . | YES_LDAS | 0.0018 | GT | 1.7465 | AG | 1.9086 | ["INTRACHROMOSOMAL[chr10:28.00Mb]"] | chr10:45684520-chr10:73713332 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| ADGRF1--TOX2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ADGRF1^ENSG00000153292.16 | chr6:47013520:- | TOX2^ENSG00000124191.18 | chr20:44054368:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1473:29072:14256 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8062 | ["INTERCHROMOSOMAL[chr6--chr20]"] | chr6:47013520-chr20:44054368 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ADARB2--UBAC2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ADARB2^ENSG00000185736.16 | chr10:1737051:- | UBAC2^ENSG00000134882.16 | chr13:99238427:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1474:51514:26418 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr10--chr13]"] | chr10:1737051-chr13:99238427 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ADARB1--AC106798.1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ADARB1^ENSG00000197381.16 | chr21:45128577:+ | AC106798.1^ENSG00000250421.5 | chr5:67824042:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2183:5959:12644 | . | NO_LDAS | 0.0146 | GT | 1.7465 | AG | 1.5628 | ["INTERCHROMOSOMAL[chr21--chr5]"] | chr21:45128577-chr5:67824042 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ADAR--CELF1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ADAR^ENSG00000160710.18 | chr1:154601041:- | CELF1^ENSG00000149187.18 | chr11:47483532:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2244:28474:6941 | . | YES_LDAS | 0.0146 | GT | 1.7968 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr1--chr11]"] | chr1:154601041-chr11:47483532 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ADAP1--ARHGEF1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ADAP1^ENSG00000105963.15 | chr7:899241:- | ARHGEF1^ENSG00000076928.18 | chr19:41888192:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2304:42227:24653 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.3753 | ["INTERCHROMOSOMAL[chr7--chr19]"] | chr7:899241-chr19:41888192 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ADAMTS7P4--CAPN7 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ADAMTS7P4^ENSG00000218052.5 | chr15:85273992:- | CAPN7^ENSG00000131375.10 | chr3:15212104:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1267:7351:5078 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8256 | ["INTERCHROMOSOMAL[chr15--chr3]"] | chr15:85273992-chr3:15212104 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ADAMTS10--CST2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ADAMTS10^ENSG00000142303.14 | chr19:8580438:- | CST2^ENSG00000170369.4 | chr20:23823778:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1462:28069:5540 | . | NO_LDAS | 0.0146 | GT | 0.9056 | AG | 1.7465 | ["INTERCHROMOSOMAL[chr19--chr20]"] | chr19:8580438-chr20:23823778 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ADAM10--SPNS2 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | ADAM10^ENSG00000137845.15 | chr15:58749480:- | SPNS2^ENSG00000183018.9 | chr17:4513247:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1408:45705:24541 | . | YES_LDAS | 0.0146 | GT | 1.4256 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr15--chr17]"] | chr15:58749480-chr17:4513247 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ACVR1B--STX6 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ACVR1B^ENSG00000135503.13 | chr12:51986852:+ | STX6^ENSG00000135823.14 | chr1:181002700:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2482:21840:8090 | . | NO_LDAS | 0.0146 | AT | 1.8323 | AC | 1.8892 | ["INTERCHROMOSOMAL[chr12--chr1]"] | chr12:51986852-chr1:181002700 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ACVR1B--PRKCI | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ACVR1B^ENSG00000135503.13 | chr12:51951737:+ | PRKCI^ENSG00000163558.13 | chr3:170222716:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1190:28935:9814 | . | NO_LDAS | 0.0146 | GT | 1.1589 | AG | 1.1589 | ["INTERCHROMOSOMAL[chr12--chr3]"] | chr12:51951737-chr3:170222716 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ACP1--CYRIA | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ACP1^ENSG00000143727.16 | chr2:272150:+ | CYRIA^ENSG00000197872.11 | chr2:16624016:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2276:34476:7530 | . | YES_LDAS | 0.0146 | GT | 1.8323 | AG | 1.9329 | ["INTRACHROMOSOMAL[chr2:16.27Mb]"] | chr2:272150-chr2:16624016 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ACAT1--RPL13 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ACAT1^ENSG00000075239.14 | chr11:108138900:+ | RPL13^ENSG00000167526.14 | chr16:89560940:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2410:6720:12252 | . | NO_LDAS | 0.0146 | GT | 1.9086 | AG | 1.6895 | ["INTERCHROMOSOMAL[chr11--chr16]"] | chr11:108138900-chr16:89560940 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC241585.1--EXOC4 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | AC241585.1^ENSG00000223612.3 | chr1:145233191:+ | EXOC4^ENSG00000131558.15 | chr7:133630045:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2209:35633:14073 | . | YES_LDAS | 0.0073 | GT | 1.7819 | AG | 1.9219 | ["INTERCHROMOSOMAL[chr1--chr7]"] | chr1:145233191-chr7:133630045 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC138393.1--SEPTIN14 | 1 | 0 | 0.33 | 0.0 | ONLY_REF_SPLICE | AC138393.1^ENSG00000229930.1 | chr1:224030704:- | SEPTIN14^ENSG00000154997.9 | chr7:55796092:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1417:2205:15755 | . | NO_LDAS | 0.0048 | GT | 1.7819 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr1--chr7]"] | chr1:224030704-chr7:55796092 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AC130509.1--PGK1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AC130509.1^ENSG00000243596.1 | chr3:146344158:- | PGK1^ENSG00000102144.15 | chrX:78125790:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1469:51255:25101 | . | NO_LDAS | 0.0146 | GT | 1.9656 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr3--chrX]"] | chr3:146344158-chrX:78125790 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC124016.1--VNN2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AC124016.1^ENSG00000273156.2 | chr4:82345626:- | VNN2^ENSG00000112303.14 | chr6:132749865:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1465:20942:6955 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr4--chr6]"] | chr4:82345626-chr6:132749865 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC105020.3--ASAH1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AC105020.3^ENSG00000260235.1 | chr15:75625696:+ | ASAH1^ENSG00000104763.20 | chr8:18075587:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:2346:18571:27147 | . | NO_LDAS | 0.0146 | GC | 1.5329 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr15--chr8]"] | chr15:75625696-chr8:18075587 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC092828.1--JMJD7 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AC092828.1^ENSG00000253284.2 | chr12:19153992:+ | JMJD7^ENSG00000243789.11 | chr15:41836148:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1256:20020:17773 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr12--chr15]"] | chr12:19153992-chr15:41836148 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC092068.3--SPG11 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AC092068.3^ENSG00000267749.1 | chr19:2642235:- | SPG11^ENSG00000104133.15 | chr15:44584087:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1333:21929:2948 | . | NO_LDAS | 0.0146 | GT | 1.9899 | AG | 1.7968 | ["INTERCHROMOSOMAL[chr19--chr15]"] | chr19:2642235-chr15:44584087 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC083906.3--C3orf33 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AC083906.3^ENSG00000250643.1 | chr3:129969198:- | C3orf33^ENSG00000174928.16 | chr3:155802591:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1307:23523:3522 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.8892 | ["INTRACHROMOSOMAL[chr3:25.79Mb]"] | chr3:129969198-chr3:155802591 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AC083864.5--AL512310.8 | 1 | 0 | 0.25 | 0.0 | INCL_NON_REF_SPLICE | AC083864.5^ENSG00000287893.1 | chr7:36011879:- | AL512310.8^ENSG00000258324.2 | chr14:19653735:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2256:34557:13359 | . | NO_LDAS | 0.0037 | GT | 1.8892 | AG | 1.9899 | ["INTERCHROMOSOMAL[chr7--chr14]"] | chr7:36011879-chr14:19653735 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC078845.1--LRBA | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AC078845.1^ENSG00000232053.7 | chr7:136117188:+ | LRBA^ENSG00000198589.14 | chr4:150808398:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:7:1453:43723:12728 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9656 | ["INTERCHROMOSOMAL[chr7--chr4]"] | chr7:136117188-chr4:150808398 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AC027129.1--SH3RF2 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AC027129.1^ENSG00000288077.1 | chr3:15503696:+ | SH3RF2^ENSG00000156463.18 | chr5:146055981:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:1387:37632:28492 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr3--chr5]"] | chr3:15503696-chr5:146055981 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC026765.3--BCORL1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AC026765.3^ENSG00000257817.2 | chr12:114748210:+ | BCORL1^ENSG00000085185.16 | chrX:130012578:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1148:6259:9211 | . | NO_LDAS | 0.0146 | GT | 1.9329 | AG | 1.9329 | ["INTERCHROMOSOMAL[chr12--chrX]"] | chr12:114748210-chrX:130012578 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AC025178.1--GOLPH3 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AC025178.1^ENSG00000250764.1 | chr5:32106124:- | GOLPH3^ENSG00000113384.14 | chr5:32143880:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1181:11307:15377 | . | YES_LDAS | 0.0146 | GT | 1.9329 | AG | 1.8892 | ["GTEx_recurrent_StarF2019","INTRACHROMOSOMAL[chr5:0.00Mb]","LOCAL_REARRANGEMENT:-:[2775]"] | chr5:32106124-chr5:32143880 | False | 0 | Excluded annotation pattern: GTEx_recurrent_StarF2019 | FAIL | 1 | |
| AC023442.1--NACA | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | AC023442.1^ENSG00000254668.1 | chr11:41797679:+ | NACA^ENSG00000196531.14 | chr12:56714648:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1462:29533:26797 | . | NO_LDAS | 0.0073 | GT | 1.7819 | AG | 1.8323 | ["INTERCHROMOSOMAL[chr11--chr12]"] | chr11:41797679-chr12:56714648 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC016831.6--PLXND1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AC016831.6^ENSG00000285106.2 | chr7:131108216:- | PLXND1^ENSG00000004399.13 | chr3:129606583:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2450:24364:1729 | . | NO_LDAS | 0.0146 | GT | 1.231 | AG | 1.4256 | ["INTERCHROMOSOMAL[chr7--chr3]"] | chr7:131108216-chr3:129606583 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC012443.1--RPL22 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | AC012443.1^ENSG00000270776.1 | chr2:152539305:- | RPL22^ENSG00000116251.11 | chr1:6193051:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1157:2909:22495 | . | NO_LDAS | 0.0073 | GT | 1.9656 | AG | 1.9086 | ["INTERCHROMOSOMAL[chr2--chr1]"] | chr2:152539305-chr1:6193051 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC009093.8--AC138512.1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AC009093.8^ENSG00000284649.1 | chr16:29116326:+ | AC138512.1^ENSG00000261273.1 | chr16:88276474:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:1154:52121:23013 | . | NO_LDAS | 0.0146 | GT | 1.8892 | AG | 1.9086 | ["INTRACHROMOSOMAL[chr16:59.12Mb]"] | chr16:29116326-chr16:88276474 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AC007384.1--SCAF1 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AC007384.1^ENSG00000237513.2 | chr7:105000584:+ | SCAF1^ENSG00000126461.15 | chr19:49652349:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2345:27996:12336 | . | YES_LDAS | 0.0146 | GT | 1.9656 | AG | 1.6729 | ["INTERCHROMOSOMAL[chr7--chr19]"] | chr7:105000584-chr19:49652349 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC005884.1--EHD4 | 1 | 0 | 0.33 | 0.0 | INCL_NON_REF_SPLICE | AC005884.1^ENSG00000267207.1 | chr17:61070025:- | EHD4^ENSG00000103966.11 | chr15:41899650:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2475:51522:27918 | . | NO_LDAS | 0.0048 | GT | 1.9656 | AG | 1.5656 | ["INTERCHROMOSOMAL[chr17--chr15]"] | chr17:61070025-chr15:41899650 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC005759.1--MGRN1 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AC005759.1^ENSG00000268650.3 | chr19:18217307:+ | MGRN1^ENSG00000102858.13 | chr16:4650365:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2114:43408:9155 | . | NO_LDAS | 0.0146 | GT | 1.8256 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr19--chr16]"] | chr19:18217307-chr16:4650365 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AC005332.4--C5orf24 | 1 | 0 | 1.0 | 0.0 | ONLY_REF_SPLICE | AC005332.4^ENSG00000274712.2 | chr17:68206238:+ | C5orf24^ENSG00000181904.9 | chr5:134854898:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1428:29275:13541 | . | NO_LDAS | 0.0146 | GT | 1.7819 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr17--chr5]"] | chr17:68206238-chr5:134854898 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| AC005034.6--SUMO2P17 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | AC005034.6^ENSG00000286045.1 | chr2:75725664:+ | SUMO2P17^ENSG00000248278.1 | chr17:48892389:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:8:2120:46579:23280 | . | NO_LDAS | 0.0146 | GT | 1.3383 | AG | 1.2419 | ["INTERCHROMOSOMAL[chr2--chr17]"] | chr2:75725664-chr17:48892389 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AC004923.1--ENPP7P4 | 1 | 0 | 0.5 | 0.0 | ONLY_REF_SPLICE | AC004923.1^ENSG00000254610.3 | chr11:67955482:- | ENPP7P4^ENSG00000241278.1 | chr3:125909203:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:1353:7877:14536 | . | YES_LDAS | 0.0073 | GT | 1.4566 | AG | 1.5219 | ["TCGA_StarF2019","CCLE_StarF2019","INTERCHROMOSOMAL[chr11--chr3]"] | chr11:67955482-chr3:125909203 | False | 0 | Read count too low: 1 < 5 | FAIL | 1 | |
| ABLIM3--PTPRB | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ABLIM3^ENSG00000173210.20 | chr5:149251419:+ | PTPRB^ENSG00000127329.16 | chr12:70558894:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2297:39355:28338 | . | NO_LDAS | 0.0146 | GT | 1.8295 | AG | 1.8892 | ["INTERCHROMOSOMAL[chr5--chr12]"] | chr5:149251419-chr12:70558894 | True | pair|recurrent breakpoints | 0 | Blacklisted | FAIL | 1 |
| ABCD3--ACSM2A | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | ABCD3^ENSG00000117528.14 | chr1:94464873:+ | ACSM2A^ENSG00000183747.12 | chr16:20487100:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2263:2432:7235 | . | NO_LDAS | 0.0073 | GT | 1.7819 | AG | 0.9183 | ["INTERCHROMOSOMAL[chr1--chr16]"] | chr1:94464873-chr16:20487100 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| ABCC5--SNX31 | 1 | 0 | 1.0 | 0.0 | INCL_NON_REF_SPLICE | ABCC5^ENSG00000114770.17 | chr3:183977517:- | SNX31^ENSG00000174226.9 | chr8:100573609:- | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:5:2379:35933:6941 | . | NO_LDAS | 0.0146 | GT | 1.8256 | AG | 1.371 | ["INTERCHROMOSOMAL[chr3--chr8]"] | chr3:183977517-chr8:100573609 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 | |
| AAK1--AC104257.1 | 1 | 0 | 0.5 | 0.0 | INCL_NON_REF_SPLICE | AAK1^ENSG00000115977.21 | chr2:69465439:- | AC104257.1^ENSG00000253507.5 | chr8:131315760:+ | &HeadNeckN_FFPE_L06_RNA_01_B23LG7FLT4_1@LH00166:238:23LG7FLT4:6:2468:34307:10542 | . | NO_LDAS | 0.0073 | GC | 1.8256 | AG | 1.7232 | ["INTERCHROMOSOMAL[chr2--chr8]"] | chr2:69465439-chr8:131315760 | False | 0 | Excluded SpliceType: INCL_NON_REF_SPLICE | FAIL | 1 |
644 rows