Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/314c3122f26d08f548fd108977fa83/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1_1.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/7555ee2aed7b42bc5897245dc9fd49/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/314c3122f26d08f548fd108977fa83/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1_2.fastp.fastq.gz
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/7555ee2aed7b42bc5897245dc9fd49/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/a4547dc5365e8b9ff227d6effa6a10/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)
-ctat genome lib [/tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.G2HLOFS1VD/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary
-sample contains 180961779 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir -J /tmp/nxf.G2HLOFS1VD/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.Chimeric.out.junction -O /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4
-parsing fusion evidence: /tmp/nxf.G2HLOFS1VD/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[1680000], rate=30361.45/min -building interval tree based on /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes
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[1670000], rate=28465.91/min -building interval tree based on /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
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[1670000], rate=27856.55/min -building interval tree based on /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes
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[130000], rate=130000.00/min
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[1660000], rate=24862.71/min
[1670000], rate=24937.78/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir --filt_file /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-parsing /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.
6000000.00 reads per min processed...
6000000.00 reads per min processed...
9000000.00 reads per min processed...
6000000.00 reads per min processed...
5000000.00 reads per min processed...
4500000.00 reads per min processed...
4666666.67 reads per min processed...
4363636.36 reads per min processed...
4153846.15 reads per min processed...
4000000.00 reads per min processed...
4125000.00 reads per min processed...
4000000.00 reads per min processed...
4105263.16 reads per min processed...
4000000.00 reads per min processed...
3913043.48 reads per min processed...
3840000.00 reads per min processed...
3777777.78 reads per min processed...
3724137.93 reads per min processed...
3677419.35 reads per min processed...
3636363.64 reads per min processed...
3705882.35 reads per min processed...
3666666.67 reads per min processed...
3631578.95 reads per min processed...
3692307.69 reads per min processed...
3658536.59 reads per min processed...
3714285.71 reads per min processed...
3681818.18 reads per min processed...
3652173.91 reads per min processed...
3702127.66 reads per min processed...
3673469.39 reads per min processed...
3720000.00 reads per min processed...
3840000.00 reads per min processed...
3882352.94 reads per min processed...
3849056.60 reads per min processed...
3888888.89 reads per min processed...
3857142.86 reads per min processed...
3894736.84 reads per min processed...
3864406.78 reads per min processed...
3900000.00 reads per min processed...
3870967.74 reads per min processed...
3904761.90 reads per min processed...
3876923.08 reads per min processed...
3909090.91 reads per min processed...
3882352.94 reads per min processed...
3913043.48 reads per min processed...
3887323.94 reads per min processed...
3916666.67 reads per min processed...
3891891.89 reads per min processed...
3868421.05 reads per min processed...
done.
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion
-parsing fusion evidence: /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.G2HLOFS1VD/aih-tih-sc-7fc50e-R1_B23WHYVLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -351987.382417
EM: Round [1] log likelihood: -351817.975429
EM: Round [2] log likelihood: -351759.661852
EM: Round [3] log likelihood: -351732.900753
EM: Round [4] log likelihood: -351718.846529
EM: Round [5] log likelihood: -351710.830467
EM: Round [6] log likelihood: -351705.957834
EM: Round [7] log likelihood: -351702.825787
EM: Round [8] log likelihood: -351700.707855
EM: Round [9] log likelihood: -351699.208945
EM: Round [10] log likelihood: -351698.104871
EM: Round [11] log likelihood: -351697.263265
EM: Round [12] log likelihood: -351696.602935
EM: Round [13] log likelihood: -351696.072215
EM: Round [14] log likelihood: -351695.637064
EM: Round [15] log likelihood: -351695.274304
EM: Round [16] log likelihood: -351694.967672
EM: Round [17] log likelihood: -351694.705441
EM: Round [18] log likelihood: -351694.478941
EM: Round [19] log likelihood: -351694.281626
EM: Round [20] log likelihood: -351694.108453
EM: Round [21] log likelihood: -351693.955472
EM: Round [22] log likelihood: -351693.819543
EM: Round [23] log likelihood: -351693.698138
EM: Round [24] log likelihood: -351693.589197
EM: Round [25] log likelihood: -351693.491024
EM: Round [26] log likelihood: -351693.402210
EM: Round [27] log likelihood: -351693.321577
EM: Round [28] log likelihood: -351693.248131
EM: Round [29] log likelihood: -351693.181028
EM: Round [30] log likelihood: -351693.119546
EM: Round [31] log likelihood: -351693.063068
EM: Round [32] log likelihood: -351693.011060
EM: Round [33] log likelihood: -351692.963058
EM: Round [34] log likelihood: -351692.918659
EM: Round [35] log likelihood: -351692.877510
EM: Round [36] log likelihood: -351692.839303
EM: Round [37] log likelihood: -351692.803764
EM: Round [38] log likelihood: -351692.770653
EM: Round [39] log likelihood: -351692.739754
EM: Round [40] log likelihood: -351692.710879
EM: Round [41] log likelihood: -351692.683856
EM: Round [42] log likelihood: -351692.658535
EM: Round [43] log likelihood: -351692.634778
EM: Round [44] log likelihood: -351692.612462
EM: Round [45] log likelihood: -351692.591478
EM: Round [46] log likelihood: -351692.571724
EM: Round [47] log likelihood: -351692.553110
EM: Round [48] log likelihood: -351692.535554
EM: Round [49] log likelihood: -351692.518980
EM: Round [50] log likelihood: -351692.503319
EM: Round [51] log likelihood: -351692.488511
EM: Round [52] log likelihood: -351692.474496
EM: Round [53] log likelihood: -351692.461224
EM: Round [54] log likelihood: -351692.448645
EM: Round [55] log likelihood: -351692.436715
EM: Round [56] log likelihood: -351692.425393
EM: Round [57] log likelihood: -351692.414642
EM: Round [58] log likelihood: -351692.404428
EM: Round [59] log likelihood: -351692.394716
EM: Round [60] log likelihood: -351692.385479
EM: Round [61] log likelihood: -351692.376688
EM: Round [62] log likelihood: -351692.368317
EM: Round [63] log likelihood: -351692.360342
EM: Round [64] log likelihood: -351692.352742
EM: Round [65] log likelihood: -351692.345495
EM: Round [66] log likelihood: -351692.338582
EM: Round [67] log likelihood: -351692.331985
EM: Round [68] log likelihood: -351692.325688
EM: Round [69] log likelihood: -351692.319673
EM: Round [70] log likelihood: -351692.313927
EM: Round [71] log likelihood: -351692.308435
EM: Round [72] log likelihood: -351692.303185
EM: Round [73] log likelihood: -351692.298164
EM: Round [74] log likelihood: -351692.293361
EM: Round [75] log likelihood: -351692.288765
EM: Round [76] log likelihood: -351692.284365
EM: Round [77] log likelihood: -351692.280152
EM: Round [78] log likelihood: -351692.276118
EM: Round [79] log likelihood: -351692.272253
EM: Round [80] log likelihood: -351692.268550
EM: Round [81] log likelihood: -351692.265001
EM: Round [82] log likelihood: -351692.261598
EM: Round [83] log likelihood: -351692.258335
EM: Round [84] log likelihood: -351692.255206
EM: Round [85] log likelihood: -351692.252204
EM: Round [86] log likelihood: -351692.249324
EM: Round [87] log likelihood: -351692.246560
EM: Round [88] log likelihood: -351692.243907
EM: Round [89] log likelihood: -351692.241360
EM: Round [90] log likelihood: -351692.238914
EM: Round [91] log likelihood: -351692.236566
EM: Round [92] log likelihood: -351692.234310
EM: Round [93] log likelihood: -351692.232143
EM: Round [94] log likelihood: -351692.230061
EM: Round [95] log likelihood: -351692.228060
EM: Round [96] log likelihood: -351692.226137
EM: Round [97] log likelihood: -351692.224289
EM: Round [98] log likelihood: -351692.222512
EM: Round [99] log likelihood: -351692.220803
EM: Round [100] log likelihood: -351692.219161
EM: Round [101] log likelihood: -351692.217581
EM: Round [102] log likelihood: -351692.216061
EM: Round [103] log likelihood: -351692.214600
EM: Round [104] log likelihood: -351692.213193
EM: Round [105] log likelihood: -351692.211841
EM: Round [106] log likelihood: -351692.210539
EM: Round [107] log likelihood: -351692.209286
EM: Round [108] log likelihood: -351692.208081
EM: Round [109] log likelihood: -351692.206920
EM: Round [110] log likelihood: -351692.205803
EM: Round [111] log likelihood: -351692.204728
EM: Round [112] log likelihood: -351692.203693
EM: Round [113] log likelihood: -351692.202696
EM: Round [114] log likelihood: -351692.201737
EM: Round [115] log likelihood: -351692.200813
EM: Round [116] log likelihood: -351692.199923
EM: Round [117] log likelihood: -351692.199066
EM: Round [118] log likelihood: -351692.198240
EM: Round [119] log likelihood: -351692.197445
EM: Round [120] log likelihood: -351692.196679
EM: Round [121] log likelihood: -351692.195941
EM: Round [122] log likelihood: -351692.195230
EM: Round [123] log likelihood: -351692.194545
EM: Round [124] log likelihood: -351692.193885
EM: Round [125] log likelihood: -351692.193249
EM: Round [126] log likelihood: -351692.192636
EM: Round [127] log likelihood: -351692.192045
EM: Round [128] log likelihood: -351692.191476
EM: Round [129] log likelihood: -351692.190928
EM: Round [130] log likelihood: -351692.190399
EM: Round [131] log likelihood: -351692.189889
EM: Round [132] log likelihood: -351692.189398
EM: Round [133] log likelihood: -351692.188924
EM: Round [134] log likelihood: -351692.188468
EM: Round [135] log likelihood: -351692.188028
EM: Round [136] log likelihood: -351692.187604
EM: Round [137] log likelihood: -351692.187194
EM: Round [138] log likelihood: -351692.186800
EM: Round [139] log likelihood: -351692.186420
EM: Round [140] log likelihood: -351692.186053
EM: Round [141] log likelihood: -351692.185699
EM: Round [142] log likelihood: -351692.185358
EM: Round [143] log likelihood: -351692.185030
EM: Round [144] log likelihood: -351692.184712
EM: Round [145] log likelihood: -351692.184407
EM: Round [146] log likelihood: -351692.184112
EM: Round [147] log likelihood: -351692.183827
EM: Round [148] log likelihood: -351692.183553
EM: Round [149] log likelihood: -351692.183288
EM: Round [150] log likelihood: -351692.183033
EM: Round [151] log likelihood: -351692.182787
EM: Round [152] log likelihood: -351692.182549
EM: Round [153] log likelihood: -351692.182320
EM: Round [154] log likelihood: -351692.182099
EM: Round [155] log likelihood: -351692.181886
EM: Round [156] log likelihood: -351692.181680
EM: Round [157] log likelihood: -351692.181481
EM: Round [158] log likelihood: -351692.181290
EM: Round [159] log likelihood: -351692.181105
EM: Round [160] log likelihood: -351692.180927
EM: Round [161] log likelihood: -351692.180755
EM: Round [162] log likelihood: -351692.180589
EM: Round [163] log likelihood: -351692.180429
EM: Round [164] log likelihood: -351692.180274
EM: Round [165] log likelihood: -351692.180125
EM: Round [166] log likelihood: -351692.179981
EM: Round [167] log likelihood: -351692.179843
EM: Round [168] log likelihood: -351692.179709
EM: Round [169] log likelihood: -351692.179579
EM: Round [170] log likelihood: -351692.179454
EM: Round [171] log likelihood: -351692.179334
EM: Round [172] log likelihood: -351692.179218
EM: Round [173] log likelihood: -351692.179106
EM: Round [174] log likelihood: -351692.178997
EM: Round [175] log likelihood: -351692.178893
EM: Round [176] log likelihood: -351692.178792
EM: Round [177] log likelihood: -351692.178695
EM: Stopping iterations at round 177 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -351583.419063
EM: Round [1] log likelihood: -351439.555159
EM: Round [2] log likelihood: -351390.687975
EM: Round [3] log likelihood: -351368.666182
EM: Round [4] log likelihood: -351357.311952
EM: Round [5] log likelihood: -351350.950996
EM: Round [6] log likelihood: -351347.152970
EM: Round [7] log likelihood: -351344.753919
EM: Round [8] log likelihood: -351343.157303
EM: Round [9] log likelihood: -351342.042145
EM: Round [10] log likelihood: -351341.228549
EM: Round [11] log likelihood: -351340.611842
EM: Round [12] log likelihood: -351340.128897
EM: Round [13] log likelihood: -351339.740282
EM: Round [14] log likelihood: -351339.420501
EM: Round [15] log likelihood: -351339.152509
EM: Round [16] log likelihood: -351338.924535
EM: Round [17] log likelihood: -351338.728204
EM: Round [18] log likelihood: -351338.557387
EM: Round [19] log likelihood: -351338.407483
EM: Round [20] log likelihood: -351338.274960
EM: Round [21] log likelihood: -351338.157055
EM: Round [22] log likelihood: -351338.051565
EM: Round [23] log likelihood: -351337.956712
EM: Round [24] log likelihood: -351337.871041
EM: Round [25] log likelihood: -351337.793346
EM: Round [26] log likelihood: -351337.722624
EM: Round [27] log likelihood: -351337.658026
EM: Round [28] log likelihood: -351337.598837
EM: Round [29] log likelihood: -351337.544443
EM: Round [30] log likelihood: -351337.494320
EM: Round [31] log likelihood: -351337.448015
EM: Round [32] log likelihood: -351337.405135
EM: Round [33] log likelihood: -351337.365340
EM: Round [34] log likelihood: -351337.328329
EM: Round [35] log likelihood: -351337.293843
EM: Round [36] log likelihood: -351337.261650
EM: Round [37] log likelihood: -351337.231548
EM: Round [38] log likelihood: -351337.203354
EM: Round [39] log likelihood: -351337.176910
EM: Round [40] log likelihood: -351337.152072
EM: Round [41] log likelihood: -351337.128712
EM: Round [42] log likelihood: -351337.106714
EM: Round [43] log likelihood: -351337.085977
EM: Round [44] log likelihood: -351337.066406
EM: Round [45] log likelihood: -351337.047917
EM: Round [46] log likelihood: -351337.030433
EM: Round [47] log likelihood: -351337.013886
EM: Round [48] log likelihood: -351336.998211
EM: Round [49] log likelihood: -351336.983351
EM: Round [50] log likelihood: -351336.969253
EM: Round [51] log likelihood: -351336.955868
EM: Round [52] log likelihood: -351336.943152
EM: Round [53] log likelihood: -351336.931063
EM: Round [54] log likelihood: -351336.919565
EM: Round [55] log likelihood: -351336.908621
EM: Round [56] log likelihood: -351336.898199
EM: Round [57] log likelihood: -351336.888270
EM: Round [58] log likelihood: -351336.878806
EM: Round [59] log likelihood: -351336.869780
EM: Round [60] log likelihood: -351336.861168
EM: Round [61] log likelihood: -351336.852949
EM: Round [62] log likelihood: -351336.845101
EM: Round [63] log likelihood: -351336.837604
EM: Round [64] log likelihood: -351336.830440
EM: Round [65] log likelihood: -351336.823592
EM: Round [66] log likelihood: -351336.817044
EM: Round [67] log likelihood: -351336.810781
EM: Round [68] log likelihood: -351336.804788
EM: Round [69] log likelihood: -351336.799053
EM: Round [70] log likelihood: -351336.793562
EM: Round [71] log likelihood: -351336.788303
EM: Round [72] log likelihood: -351336.783266
EM: Round [73] log likelihood: -351336.778440
EM: Round [74] log likelihood: -351336.773816
EM: Round [75] log likelihood: -351336.769383
EM: Round [76] log likelihood: -351336.765132
EM: Round [77] log likelihood: -351336.761056
EM: Round [78] log likelihood: -351336.757147
EM: Round [79] log likelihood: -351336.753396
EM: Round [80] log likelihood: -351336.749797
EM: Round [81] log likelihood: -351336.746343
EM: Round [82] log likelihood: -351336.743028
EM: Round [83] log likelihood: -351336.739845
EM: Round [84] log likelihood: -351336.736789
EM: Round [85] log likelihood: -351336.733854
EM: Round [86] log likelihood: -351336.731035
EM: Round [87] log likelihood: -351336.728326
EM: Round [88] log likelihood: -351336.725724
EM: Round [89] log likelihood: -351336.723224
EM: Round [90] log likelihood: -351336.720821
EM: Round [91] log likelihood: -351336.718511
EM: Round [92] log likelihood: -351336.716291
EM: Round [93] log likelihood: -351336.714156
EM: Round [94] log likelihood: -351336.712103
EM: Round [95] log likelihood: -351336.710129
EM: Round [96] log likelihood: -351336.708231
EM: Round [97] log likelihood: -351336.706405
EM: Round [98] log likelihood: -351336.704648
EM: Round [99] log likelihood: -351336.702959
EM: Round [100] log likelihood: -351336.701333
EM: Round [101] log likelihood: -351336.699768
EM: Round [102] log likelihood: -351336.698263
EM: Round [103] log likelihood: -351336.696814
EM: Round [104] log likelihood: -351336.695419
EM: Round [105] log likelihood: -351336.694077
EM: Round [106] log likelihood: -351336.692784
EM: Round [107] log likelihood: -351336.691540
EM: Round [108] log likelihood: -351336.690343
EM: Round [109] log likelihood: -351336.689189
EM: Round [110] log likelihood: -351336.688079
EM: Round [111] log likelihood: -351336.687009
EM: Round [112] log likelihood: -351336.685979
EM: Round [113] log likelihood: -351336.684987
EM: Round [114] log likelihood: -351336.684031
EM: Round [115] log likelihood: -351336.683111
EM: Round [116] log likelihood: -351336.682224
EM: Round [117] log likelihood: -351336.681370
EM: Round [118] log likelihood: -351336.680547
EM: Round [119] log likelihood: -351336.679754
EM: Round [120] log likelihood: -351336.678990
EM: Round [121] log likelihood: -351336.678254
EM: Round [122] log likelihood: -351336.677545
EM: Round [123] log likelihood: -351336.676861
EM: Round [124] log likelihood: -351336.676202
EM: Round [125] log likelihood: -351336.675567
EM: Round [126] log likelihood: -351336.674955
EM: Round [127] log likelihood: -351336.674365
EM: Round [128] log likelihood: -351336.673796
EM: Round [129] log likelihood: -351336.673248
EM: Round [130] log likelihood: -351336.672720
EM: Round [131] log likelihood: -351336.672211
EM: Round [132] log likelihood: -351336.671719
EM: Round [133] log likelihood: -351336.671246
EM: Round [134] log likelihood: -351336.670790
EM: Round [135] log likelihood: -351336.670349
EM: Round [136] log likelihood: -351336.669925
EM: Round [137] log likelihood: -351336.669516
EM: Round [138] log likelihood: -351336.669121
EM: Round [139] log likelihood: -351336.668741
EM: Round [140] log likelihood: -351336.668374
EM: Round [141] log likelihood: -351336.668020
EM: Round [142] log likelihood: -351336.667679
EM: Round [143] log likelihood: -351336.667350
EM: Round [144] log likelihood: -351336.667032
EM: Round [145] log likelihood: -351336.666726
EM: Round [146] log likelihood: -351336.666431
EM: Round [147] log likelihood: -351336.666146
EM: Round [148] log likelihood: -351336.665871
EM: Round [149] log likelihood: -351336.665606
EM: Round [150] log likelihood: -351336.665350
EM: Round [151] log likelihood: -351336.665104
EM: Round [152] log likelihood: -351336.664866
EM: Round [153] log likelihood: -351336.664636
EM: Round [154] log likelihood: -351336.664415
EM: Round [155] log likelihood: -351336.664201
EM: Round [156] log likelihood: -351336.663995
EM: Round [157] log likelihood: -351336.663796
EM: Round [158] log likelihood: -351336.663604
EM: Round [159] log likelihood: -351336.663419
EM: Round [160] log likelihood: -351336.663241
EM: Round [161] log likelihood: -351336.663068
EM: Round [162] log likelihood: -351336.662902
EM: Round [163] log likelihood: -351336.662741
EM: Round [164] log likelihood: -351336.662587
EM: Round [165] log likelihood: -351336.662437
EM: Round [166] log likelihood: -351336.662293
EM: Round [167] log likelihood: -351336.662154
EM: Round [168] log likelihood: -351336.662019
EM: Round [169] log likelihood: -351336.661890
EM: Round [170] log likelihood: -351336.661765
EM: Round [171] log likelihood: -351336.661644
EM: Round [172] log likelihood: -351336.661527
EM: Round [173] log likelihood: -351336.661415
EM: Round [174] log likelihood: -351336.661306
EM: Round [175] log likelihood: -351336.661202
EM: Round [176] log likelihood: -351336.661100
EM: Round [177] log likelihood: -351336.661003
EM: Stopping iterations at round 177 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20
CMD: cp /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 180961779 > /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.G2HLOFS1VD/ctat_genome_lib_build_dir > /tmp/nxf.G2HLOFS1VD/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo