.command.log - Workdir - NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (aih-tih-sc-762402-R1_B23WHYVLT4_1)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/30e5678b5e3b87f7c9a913ab1a82ab/.command.log
Size: 48.8 KB
Task: NFCORE_RNAFUSION:RNAFUSION:STARFUSION_WORKFLOW:STARFUSION (aih-tih-sc-762402-R1_B23WHYVLT4_1)
Attempt
Content

  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/30e5678b5e3b87f7c9a913ab1a82ab/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/30e5678b5e3b87f7c9a913ab1a82ab/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/9b4784e989937274c95e3ce5e97ec3/aih-tih-sc-762402-R1_B23WHYVLT4_1.Chimeric.out.junction
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/15030876305a5ac727d6f7919f5c46/aih-tih-sc-762402-R1_B23WHYVLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/15030876305a5ac727d6f7919f5c46/aih-tih-sc-762402-R1_B23WHYVLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.RCj0AEj3sg/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary
-sample contains 211921192 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir  -J /tmp/nxf.RCj0AEj3sg/aih-tih-sc-762402-R1_B23WHYVLT4_1.Chimeric.out.junction  -O /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.RCj0AEj3sg/aih-tih-sc-762402-R1_B23WHYVLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[1730000], rate=39362.91/min -building interval tree based on /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[1760000], rate=36376.16/min -building interval tree based on /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

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[1550000], rate=36356.53/min 
[1560000], rate=36477.01/min 
[1570000], rate=36610.96/min 
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[1660000], rate=35508.02/min 
[1670000], rate=35256.86/min 
[1680000], rate=35000.00/min 
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[1700000], rate=34693.88/min 
[1710000], rate=34557.09/min 
[1720000], rate=34434.43/min 
[1730000], rate=34382.25/min 
[1740000], rate=34274.46/min 
[1750000], rate=34381.14/min 
[1760000], rate=34487.26/min -building interval tree based on /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=100000.00/min 
[20000], rate=92307.69/min 
[30000], rate=112500.00/min 
[40000], rate=109090.91/min 
[50000], rate=96774.19/min 
[60000], rate=94736.84/min 
[70000], rate=95454.55/min 
[80000], rate=96000.00/min 
[90000], rate=90000.00/min 
[100000], rate=92307.69/min 
[110000], rate=92957.75/min 
[120000], rate=94736.84/min 
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[1450000], rate=24328.86/min 
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[1480000], rate=24209.38/min 
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[1500000], rate=24187.05/min 
[1510000], rate=24198.72/min 
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[1720000], rate=25690.81/min 
[1730000], rate=25788.82/min 
[1740000], rate=25886.44/min 
[1750000], rate=25990.10/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 4500000.00 reads per min processed...  
 4000000.00 reads per min processed...  
 3750000.00 reads per min processed...  
 3600000.00 reads per min processed...  
 3500000.00 reads per min processed...  
 3428571.43 reads per min processed...  
 3375000.00 reads per min processed...  
 3333333.33 reads per min processed...  
 3300000.00 reads per min processed...  
 3428571.43 reads per min processed...  
 3250000.00 reads per min processed...  
 3230769.23 reads per min processed...  
 3214285.71 reads per min processed...  
 3200000.00 reads per min processed...  
 3090909.09 reads per min processed...  
 3176470.59 reads per min processed...  
 3166666.67 reads per min processed...  
 3157894.74 reads per min processed...  
 3230769.23 reads per min processed...  
 3219512.20 reads per min processed...  
 3209302.33 reads per min processed...  
 3272727.27 reads per min processed...  
 3260869.57 reads per min processed...  
 3250000.00 reads per min processed...  
 3240000.00 reads per min processed...  
 3230769.23 reads per min processed...  
 3222222.22 reads per min processed...  
 3214285.71 reads per min processed...  
 3206896.55 reads per min processed...  
 3254237.29 reads per min processed...  
 3245901.64 reads per min processed...  
 3290322.58 reads per min processed...  
 3281250.00 reads per min processed...  
 3272727.27 reads per min processed...  
 3264705.88 reads per min processed...  
 3257142.86 reads per min processed...  
 3250000.00 reads per min processed...  
 3243243.24 reads per min processed...  
 3236842.11 reads per min processed...  
 3230769.23 reads per min processed...  
 3225000.00 reads per min processed...  
 3219512.20 reads per min processed...  
 3214285.71 reads per min processed...  
 3209302.33 reads per min processed...  
 3204545.45 reads per min processed...  
 3200000.00 reads per min processed...  
 3195652.17 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.RCj0AEj3sg/aih-tih-sc-762402-R1_B23WHYVLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -607487.912312
EM: Round [1] log likelihood: -607163.681078
EM: Round [2] log likelihood: -607065.719098
EM: Round [3] log likelihood: -607022.206743
EM: Round [4] log likelihood: -606999.391809
EM: Round [5] log likelihood: -606986.135565
EM: Round [6] log likelihood: -606977.840647
EM: Round [7] log likelihood: -606972.330588
EM: Round [8] log likelihood: -606968.482671
EM: Round [9] log likelihood: -606965.680639
EM: Round [10] log likelihood: -606963.568056
EM: Round [11] log likelihood: -606961.928847
EM: Round [12] log likelihood: -606960.626310
EM: Round [13] log likelihood: -606959.570569
EM: Round [14] log likelihood: -606958.700469
EM: Round [15] log likelihood: -606957.973135
EM: Round [16] log likelihood: -606957.357700
EM: Round [17] log likelihood: -606956.831436
EM: Round [18] log likelihood: -606956.377264
EM: Round [19] log likelihood: -606955.982126
EM: Round [20] log likelihood: -606955.635883
EM: Round [21] log likelihood: -606955.330548
EM: Round [22] log likelihood: -606955.059753
EM: Round [23] log likelihood: -606954.818365
EM: Round [24] log likelihood: -606954.602196
EM: Round [25] log likelihood: -606954.407806
EM: Round [26] log likelihood: -606954.232337
EM: Round [27] log likelihood: -606954.073399
EM: Round [28] log likelihood: -606953.928978
EM: Round [29] log likelihood: -606953.797367
EM: Round [30] log likelihood: -606953.677107
EM: Round [31] log likelihood: -606953.566946
EM: Round [32] log likelihood: -606953.465802
EM: Round [33] log likelihood: -606953.372737
EM: Round [34] log likelihood: -606953.286934
EM: Round [35] log likelihood: -606953.207677
EM: Round [36] log likelihood: -606953.134337
EM: Round [37] log likelihood: -606953.066358
EM: Round [38] log likelihood: -606953.003250
EM: Round [39] log likelihood: -606952.944575
EM: Round [40] log likelihood: -606952.889944
EM: Round [41] log likelihood: -606952.839011
EM: Round [42] log likelihood: -606952.791463
EM: Round [43] log likelihood: -606952.747021
EM: Round [44] log likelihood: -606952.705433
EM: Round [45] log likelihood: -606952.666471
EM: Round [46] log likelihood: -606952.629930
EM: Round [47] log likelihood: -606952.595624
EM: Round [48] log likelihood: -606952.563384
EM: Round [49] log likelihood: -606952.533055
EM: Round [50] log likelihood: -606952.504498
EM: Round [51] log likelihood: -606952.477584
EM: Round [52] log likelihood: -606952.452197
EM: Round [53] log likelihood: -606952.428229
EM: Round [54] log likelihood: -606952.405582
EM: Round [55] log likelihood: -606952.384167
EM: Round [56] log likelihood: -606952.363900
EM: Round [57] log likelihood: -606952.344705
EM: Round [58] log likelihood: -606952.326512
EM: Round [59] log likelihood: -606952.309256
EM: Round [60] log likelihood: -606952.292877
EM: Round [61] log likelihood: -606952.277320
EM: Round [62] log likelihood: -606952.262533
EM: Round [63] log likelihood: -606952.248469
EM: Round [64] log likelihood: -606952.235085
EM: Round [65] log likelihood: -606952.222338
EM: Round [66] log likelihood: -606952.210192
EM: Round [67] log likelihood: -606952.198611
EM: Round [68] log likelihood: -606952.187562
EM: Round [69] log likelihood: -606952.177014
EM: Round [70] log likelihood: -606952.166939
EM: Round [71] log likelihood: -606952.157311
EM: Round [72] log likelihood: -606952.148104
EM: Round [73] log likelihood: -606952.139295
EM: Round [74] log likelihood: -606952.130863
EM: Round [75] log likelihood: -606952.122787
EM: Round [76] log likelihood: -606952.115047
EM: Round [77] log likelihood: -606952.107628
EM: Round [78] log likelihood: -606952.100510
EM: Round [79] log likelihood: -606952.093680
EM: Round [80] log likelihood: -606952.087122
EM: Round [81] log likelihood: -606952.080822
EM: Round [82] log likelihood: -606952.074768
EM: Round [83] log likelihood: -606952.068946
EM: Round [84] log likelihood: -606952.063346
EM: Round [85] log likelihood: -606952.057957
EM: Round [86] log likelihood: -606952.052768
EM: Round [87] log likelihood: -606952.047770
EM: Round [88] log likelihood: -606952.042954
EM: Round [89] log likelihood: -606952.038311
EM: Round [90] log likelihood: -606952.033833
EM: Round [91] log likelihood: -606952.029513
EM: Round [92] log likelihood: -606952.025343
EM: Round [93] log likelihood: -606952.021316
EM: Round [94] log likelihood: -606952.017426
EM: Round [95] log likelihood: -606952.013667
EM: Round [96] log likelihood: -606952.010033
EM: Round [97] log likelihood: -606952.006518
EM: Round [98] log likelihood: -606952.003118
EM: Round [99] log likelihood: -606951.999828
EM: Round [100] log likelihood: -606951.996642
EM: Round [101] log likelihood: -606951.993556
EM: Round [102] log likelihood: -606951.990566
EM: Round [103] log likelihood: -606951.987668
EM: Round [104] log likelihood: -606951.984859
EM: Round [105] log likelihood: -606951.982134
EM: Round [106] log likelihood: -606951.979491
EM: Round [107] log likelihood: -606951.976925
EM: Round [108] log likelihood: -606951.974434
EM: Round [109] log likelihood: -606951.972015
EM: Round [110] log likelihood: -606951.969665
EM: Round [111] log likelihood: -606951.967382
EM: Round [112] log likelihood: -606951.965162
EM: Round [113] log likelihood: -606951.963004
EM: Round [114] log likelihood: -606951.960904
EM: Round [115] log likelihood: -606951.958861
EM: Round [116] log likelihood: -606951.956873
EM: Round [117] log likelihood: -606951.954938
EM: Round [118] log likelihood: -606951.953053
EM: Round [119] log likelihood: -606951.951217
EM: Round [120] log likelihood: -606951.949429
EM: Round [121] log likelihood: -606951.947685
EM: Round [122] log likelihood: -606951.945986
EM: Round [123] log likelihood: -606951.944328
EM: Round [124] log likelihood: -606951.942712
EM: Round [125] log likelihood: -606951.941134
EM: Round [126] log likelihood: -606951.939595
EM: Round [127] log likelihood: -606951.938093
EM: Round [128] log likelihood: -606951.936626
EM: Round [129] log likelihood: -606951.935193
EM: Round [130] log likelihood: -606951.933793
EM: Round [131] log likelihood: -606951.932426
EM: Round [132] log likelihood: -606951.931089
EM: Round [133] log likelihood: -606951.929782
EM: Round [134] log likelihood: -606951.928505
EM: Round [135] log likelihood: -606951.927255
EM: Round [136] log likelihood: -606951.926033
EM: Round [137] log likelihood: -606951.924837
EM: Round [138] log likelihood: -606951.923667
EM: Round [139] log likelihood: -606951.922521
EM: Round [140] log likelihood: -606951.921400
EM: Round [141] log likelihood: -606951.920302
EM: Round [142] log likelihood: -606951.919226
EM: Round [143] log likelihood: -606951.918172
EM: Round [144] log likelihood: -606951.917140
EM: Round [145] log likelihood: -606951.916128
EM: Round [146] log likelihood: -606951.915136
EM: Round [147] log likelihood: -606951.914164
EM: Round [148] log likelihood: -606951.913210
EM: Round [149] log likelihood: -606951.912275
EM: Round [150] log likelihood: -606951.911358
EM: Round [151] log likelihood: -606951.910458
EM: Round [152] log likelihood: -606951.909575
EM: Round [153] log likelihood: -606951.908709
EM: Round [154] log likelihood: -606951.907858
EM: Round [155] log likelihood: -606951.907023
EM: Round [156] log likelihood: -606951.906203
EM: Round [157] log likelihood: -606951.905398
EM: Round [158] log likelihood: -606951.904608
EM: Round [159] log likelihood: -606951.903831
EM: Round [160] log likelihood: -606951.903068
EM: Round [161] log likelihood: -606951.902318
EM: Round [162] log likelihood: -606951.901582
EM: Round [163] log likelihood: -606951.900858
EM: Round [164] log likelihood: -606951.900146
EM: Round [165] log likelihood: -606951.899446
EM: Round [166] log likelihood: -606951.898758
EM: Round [167] log likelihood: -606951.898081
EM: Round [168] log likelihood: -606951.897416
EM: Round [169] log likelihood: -606951.896762
EM: Round [170] log likelihood: -606951.896118
EM: Round [171] log likelihood: -606951.895484
EM: Round [172] log likelihood: -606951.894861
EM: Round [173] log likelihood: -606951.894248
EM: Round [174] log likelihood: -606951.893644
EM: Round [175] log likelihood: -606951.893050
EM: Round [176] log likelihood: -606951.892466
EM: Round [177] log likelihood: -606951.891890
EM: Round [178] log likelihood: -606951.891323
EM: Round [179] log likelihood: -606951.890765
EM: Round [180] log likelihood: -606951.890216
EM: Round [181] log likelihood: -606951.889674
EM: Round [182] log likelihood: -606951.889141
EM: Round [183] log likelihood: -606951.888616
EM: Round [184] log likelihood: -606951.888099
EM: Round [185] log likelihood: -606951.887590
EM: Round [186] log likelihood: -606951.887088
EM: Round [187] log likelihood: -606951.886593
EM: Round [188] log likelihood: -606951.886105
EM: Round [189] log likelihood: -606951.885625
EM: Round [190] log likelihood: -606951.885152
EM: Round [191] log likelihood: -606951.884685
EM: Round [192] log likelihood: -606951.884225
EM: Round [193] log likelihood: -606951.883772
EM: Round [194] log likelihood: -606951.883325
EM: Round [195] log likelihood: -606951.882884
EM: Round [196] log likelihood: -606951.882450
EM: Round [197] log likelihood: -606951.882021
EM: Round [198] log likelihood: -606951.881599
EM: Round [199] log likelihood: -606951.881182
EM: Round [200] log likelihood: -606951.880771
EM: Round [201] log likelihood: -606951.880366
EM: Round [202] log likelihood: -606951.879966
EM: Round [203] log likelihood: -606951.879572
EM: Round [204] log likelihood: -606951.879183
EM: Round [205] log likelihood: -606951.878800
EM: Round [206] log likelihood: -606951.878421
EM: Round [207] log likelihood: -606951.878048
EM: Round [208] log likelihood: -606951.877680
EM: Round [209] log likelihood: -606951.877316
EM: Round [210] log likelihood: -606951.876958
EM: Round [211] log likelihood: -606951.876604
EM: Round [212] log likelihood: -606951.876255
EM: Round [213] log likelihood: -606951.875910
EM: Round [214] log likelihood: -606951.875570
EM: Round [215] log likelihood: -606951.875234
EM: Round [216] log likelihood: -606951.874903
EM: Round [217] log likelihood: -606951.874576
EM: Round [218] log likelihood: -606951.874254
EM: Round [219] log likelihood: -606951.873935
EM: Round [220] log likelihood: -606951.873621
EM: Round [221] log likelihood: -606951.873310
EM: Round [222] log likelihood: -606951.873004
EM: Round [223] log likelihood: -606951.872702
EM: Round [224] log likelihood: -606951.872403
EM: Round [225] log likelihood: -606951.872108
EM: Round [226] log likelihood: -606951.871817
EM: Round [227] log likelihood: -606951.871530
EM: Round [228] log likelihood: -606951.871247
EM: Round [229] log likelihood: -606951.870967
EM: Round [230] log likelihood: -606951.870690
EM: Round [231] log likelihood: -606951.870417
EM: Round [232] log likelihood: -606951.870147
EM: Round [233] log likelihood: -606951.869881
EM: Round [234] log likelihood: -606951.869618
EM: Round [235] log likelihood: -606951.869359
EM: Round [236] log likelihood: -606951.869102
EM: Round [237] log likelihood: -606951.868849
EM: Round [238] log likelihood: -606951.868599
EM: Round [239] log likelihood: -606951.868352
EM: Round [240] log likelihood: -606951.868109
EM: Round [241] log likelihood: -606951.867868
EM: Round [242] log likelihood: -606951.867630
EM: Round [243] log likelihood: -606951.867395
EM: Round [244] log likelihood: -606951.867163
EM: Round [245] log likelihood: -606951.866934
EM: Round [246] log likelihood: -606951.866708
EM: Round [247] log likelihood: -606951.866484
EM: Round [248] log likelihood: -606951.866263
EM: Round [249] log likelihood: -606951.866045
EM: Round [250] log likelihood: -606951.865830
EM: Round [251] log likelihood: -606951.865617
EM: Round [252] log likelihood: -606951.865407
EM: Round [253] log likelihood: -606951.865199
EM: Round [254] log likelihood: -606951.864994
EM: Round [255] log likelihood: -606951.864792
EM: Round [256] log likelihood: -606951.864592
EM: Round [257] log likelihood: -606951.864394
EM: Round [258] log likelihood: -606951.864199
EM: Round [259] log likelihood: -606951.864006
EM: Round [260] log likelihood: -606951.863815
EM: Round [261] log likelihood: -606951.863627
EM: Round [262] log likelihood: -606951.863441
EM: Round [263] log likelihood: -606951.863257
EM: Round [264] log likelihood: -606951.863076
EM: Round [265] log likelihood: -606951.862896
EM: Round [266] log likelihood: -606951.862719
EM: Round [267] log likelihood: -606951.862544
EM: Round [268] log likelihood: -606951.862371
EM: Round [269] log likelihood: -606951.862200
EM: Round [270] log likelihood: -606951.862032
EM: Round [271] log likelihood: -606951.861865
EM: Round [272] log likelihood: -606951.861700
EM: Round [273] log likelihood: -606951.861537
EM: Round [274] log likelihood: -606951.861376
EM: Round [275] log likelihood: -606951.861218
EM: Round [276] log likelihood: -606951.861061
EM: Round [277] log likelihood: -606951.860905
EM: Round [278] log likelihood: -606951.860752
EM: Round [279] log likelihood: -606951.860601
EM: Round [280] log likelihood: -606951.860451
EM: Round [281] log likelihood: -606951.860303
EM: Round [282] log likelihood: -606951.860157
EM: Round [283] log likelihood: -606951.860013
EM: Round [284] log likelihood: -606951.859870
EM: Round [285] log likelihood: -606951.859730
EM: Round [286] log likelihood: -606951.859590
EM: Round [287] log likelihood: -606951.859453
EM: Round [288] log likelihood: -606951.859317
EM: Round [289] log likelihood: -606951.859183
EM: Round [290] log likelihood: -606951.859050
EM: Round [291] log likelihood: -606951.858919
EM: Round [292] log likelihood: -606951.858789
EM: Round [293] log likelihood: -606951.858661
EM: Round [294] log likelihood: -606951.858535
EM: Round [295] log likelihood: -606951.858410
EM: Round [296] log likelihood: -606951.858286
EM: Round [297] log likelihood: -606951.858164
EM: Round [298] log likelihood: -606951.858044
EM: Round [299] log likelihood: -606951.857925
EM: Round [300] log likelihood: -606951.857807
EM: Round [301] log likelihood: -606951.857691
EM: Round [302] log likelihood: -606951.857576
EM: Round [303] log likelihood: -606951.857462
EM: Round [304] log likelihood: -606951.857350
EM: Round [305] log likelihood: -606951.857239
EM: Round [306] log likelihood: -606951.857129
EM: Round [307] log likelihood: -606951.857021
EM: Round [308] log likelihood: -606951.856914
EM: Round [309] log likelihood: -606951.856808
EM: Round [310] log likelihood: -606951.856704
EM: Round [311] log likelihood: -606951.856601
EM: Round [312] log likelihood: -606951.856498
EM: Round [313] log likelihood: -606951.856398
EM: Round [314] log likelihood: -606951.856298
EM: Stopping iterations at round 314 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -600155.797235
EM: Round [1] log likelihood: -599907.589748
EM: Round [2] log likelihood: -599832.777657
EM: Round [3] log likelihood: -599800.508180
EM: Round [4] log likelihood: -599784.161082
EM: Round [5] log likelihood: -599775.000574
EM: Round [6] log likelihood: -599769.476448
EM: Round [7] log likelihood: -599765.935419
EM: Round [8] log likelihood: -599763.541159
EM: Round [9] log likelihood: -599761.845523
EM: Round [10] log likelihood: -599760.596424
EM: Round [11] log likelihood: -599759.645543
EM: Round [12] log likelihood: -599758.901819
EM: Round [13] log likelihood: -599758.307051
EM: Round [14] log likelihood: -599757.822636
EM: Round [15] log likelihood: -599757.422085
EM: Round [16] log likelihood: -599757.086670
EM: Round [17] log likelihood: -599756.802786
EM: Round [18] log likelihood: -599756.560320
EM: Round [19] log likelihood: -599756.351599
EM: Round [20] log likelihood: -599756.170692
EM: Round [21] log likelihood: -599756.012949
EM: Round [22] log likelihood: -599755.874666
EM: Round [23] log likelihood: -599755.752862
EM: Round [24] log likelihood: -599755.645109
EM: Round [25] log likelihood: -599755.549411
EM: Round [26] log likelihood: -599755.464113
EM: Round [27] log likelihood: -599755.387832
EM: Round [28] log likelihood: -599755.319405
EM: Round [29] log likelihood: -599755.257847
EM: Round [30] log likelihood: -599755.202319
EM: Round [31] log likelihood: -599755.152103
EM: Round [32] log likelihood: -599755.106583
EM: Round [33] log likelihood: -599755.065225
EM: Round [34] log likelihood: -599755.027568
EM: Round [35] log likelihood: -599754.993210
EM: Round [36] log likelihood: -599754.961799
EM: Round [37] log likelihood: -599754.933029
EM: Round [38] log likelihood: -599754.906628
EM: Round [39] log likelihood: -599754.882359
EM: Round [40] log likelihood: -599754.860013
EM: Round [41] log likelihood: -599754.839402
EM: Round [42] log likelihood: -599754.820362
EM: Round [43] log likelihood: -599754.802745
EM: Round [44] log likelihood: -599754.786421
EM: Round [45] log likelihood: -599754.771273
EM: Round [46] log likelihood: -599754.757197
EM: Round [47] log likelihood: -599754.744097
EM: Round [48] log likelihood: -599754.731891
EM: Round [49] log likelihood: -599754.720502
EM: Round [50] log likelihood: -599754.709862
EM: Round [51] log likelihood: -599754.699910
EM: Round [52] log likelihood: -599754.690589
EM: Round [53] log likelihood: -599754.681850
EM: Round [54] log likelihood: -599754.673646
EM: Round [55] log likelihood: -599754.665937
EM: Round [56] log likelihood: -599754.658684
EM: Round [57] log likelihood: -599754.651854
EM: Round [58] log likelihood: -599754.645416
EM: Round [59] log likelihood: -599754.639340
EM: Round [60] log likelihood: -599754.633601
EM: Round [61] log likelihood: -599754.628175
EM: Round [62] log likelihood: -599754.623040
EM: Round [63] log likelihood: -599754.618177
EM: Round [64] log likelihood: -599754.613567
EM: Round [65] log likelihood: -599754.609193
EM: Round [66] log likelihood: -599754.605040
EM: Round [67] log likelihood: -599754.601094
EM: Round [68] log likelihood: -599754.597342
EM: Round [69] log likelihood: -599754.593771
EM: Round [70] log likelihood: -599754.590370
EM: Round [71] log likelihood: -599754.587130
EM: Round [72] log likelihood: -599754.584040
EM: Round [73] log likelihood: -599754.581092
EM: Round [74] log likelihood: -599754.578277
EM: Round [75] log likelihood: -599754.575589
EM: Round [76] log likelihood: -599754.573019
EM: Round [77] log likelihood: -599754.570561
EM: Round [78] log likelihood: -599754.568210
EM: Round [79] log likelihood: -599754.565959
EM: Round [80] log likelihood: -599754.563804
EM: Round [81] log likelihood: -599754.561738
EM: Round [82] log likelihood: -599754.559758
EM: Round [83] log likelihood: -599754.557860
EM: Round [84] log likelihood: -599754.556038
EM: Round [85] log likelihood: -599754.554290
EM: Round [86] log likelihood: -599754.552611
EM: Round [87] log likelihood: -599754.550999
EM: Round [88] log likelihood: -599754.549450
EM: Round [89] log likelihood: -599754.547962
EM: Round [90] log likelihood: -599754.546530
EM: Round [91] log likelihood: -599754.545154
EM: Round [92] log likelihood: -599754.543830
EM: Round [93] log likelihood: -599754.542556
EM: Round [94] log likelihood: -599754.541330
EM: Round [95] log likelihood: -599754.540150
EM: Round [96] log likelihood: -599754.539013
EM: Round [97] log likelihood: -599754.537918
EM: Round [98] log likelihood: -599754.536863
EM: Round [99] log likelihood: -599754.535846
EM: Round [100] log likelihood: -599754.534867
EM: Round [101] log likelihood: -599754.533922
EM: Round [102] log likelihood: -599754.533011
EM: Round [103] log likelihood: -599754.532133
EM: Round [104] log likelihood: -599754.531286
EM: Round [105] log likelihood: -599754.530469
EM: Round [106] log likelihood: -599754.529680
EM: Round [107] log likelihood: -599754.528920
EM: Round [108] log likelihood: -599754.528185
EM: Round [109] log likelihood: -599754.527476
EM: Round [110] log likelihood: -599754.526792
EM: Round [111] log likelihood: -599754.526131
EM: Round [112] log likelihood: -599754.525493
EM: Round [113] log likelihood: -599754.524877
EM: Round [114] log likelihood: -599754.524281
EM: Round [115] log likelihood: -599754.523706
EM: Round [116] log likelihood: -599754.523151
EM: Round [117] log likelihood: -599754.522614
EM: Round [118] log likelihood: -599754.522095
EM: Round [119] log likelihood: -599754.521594
EM: Round [120] log likelihood: -599754.521109
EM: Round [121] log likelihood: -599754.520641
EM: Round [122] log likelihood: -599754.520188
EM: Round [123] log likelihood: -599754.519750
EM: Round [124] log likelihood: -599754.519327
EM: Round [125] log likelihood: -599754.518918
EM: Round [126] log likelihood: -599754.518522
EM: Round [127] log likelihood: -599754.518140
EM: Round [128] log likelihood: -599754.517769
EM: Round [129] log likelihood: -599754.517412
EM: Round [130] log likelihood: -599754.517065
EM: Round [131] log likelihood: -599754.516730
EM: Round [132] log likelihood: -599754.516407
EM: Round [133] log likelihood: -599754.516093
EM: Round [134] log likelihood: -599754.515790
EM: Round [135] log likelihood: -599754.515496
EM: Round [136] log likelihood: -599754.515213
EM: Round [137] log likelihood: -599754.514938
EM: Round [138] log likelihood: -599754.514672
EM: Round [139] log likelihood: -599754.514415
EM: Round [140] log likelihood: -599754.514166
EM: Round [141] log likelihood: -599754.513925
EM: Round [142] log likelihood: -599754.513692
EM: Round [143] log likelihood: -599754.513466
EM: Round [144] log likelihood: -599754.513248
EM: Round [145] log likelihood: -599754.513036
EM: Round [146] log likelihood: -599754.512831
EM: Round [147] log likelihood: -599754.512633
EM: Round [148] log likelihood: -599754.512441
EM: Round [149] log likelihood: -599754.512256
EM: Round [150] log likelihood: -599754.512076
EM: Round [151] log likelihood: -599754.511902
EM: Round [152] log likelihood: -599754.511733
EM: Round [153] log likelihood: -599754.511570
EM: Round [154] log likelihood: -599754.511412
EM: Round [155] log likelihood: -599754.511258
EM: Round [156] log likelihood: -599754.511110
EM: Round [157] log likelihood: -599754.510967
EM: Round [158] log likelihood: -599754.510828
EM: Round [159] log likelihood: -599754.510693
EM: Round [160] log likelihood: -599754.510563
EM: Round [161] log likelihood: -599754.510436
EM: Round [162] log likelihood: -599754.510314
EM: Round [163] log likelihood: -599754.510196
EM: Round [164] log likelihood: -599754.510081
EM: Round [165] log likelihood: -599754.509970
EM: Round [166] log likelihood: -599754.509862
EM: Round [167] log likelihood: -599754.509758
EM: Round [168] log likelihood: -599754.509657
EM: Round [169] log likelihood: -599754.509559
EM: Stopping iterations at round 169 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.RCj0AEj3sg/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.RCj0AEj3sg/ctat_genome_lib_build_dir