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Filename
NTC_0001_0001_A23YTGFLT4_1_collectinsertsize.txt
Full Path
s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0021/A23YTGFLT4/nfcore_rnafusion__d2190e45--20260603-105009/QC/picard/NTC_0001_0001_A23YTGFLT4_1_collectinsertsize.txt
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2.0 KB
Published
Jun 03, 2026 11:59 AM
## htsjdk.samtools.metrics.StringHeader
# CollectInsertSizeMetrics --Histogram_FILE NTC_0001_0001_A23YTGFLT4_1_collectinsertsize.pdf --INPUT NTC_0001_0001_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT NTC_0001_0001_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
## htsjdk.samtools.metrics.StringHeader
# Started on: Wed Jun 03 18:59:09 GMT 2026

## METRICS CLASS	picard.analysis.InsertSizeMetrics
MEDIAN_INSERT_SIZE	MODE_INSERT_SIZE	MEDIAN_ABSOLUTE_DEVIATION	MIN_INSERT_SIZE	MAX_INSERT_SIZE	MEAN_INSERT_SIZE	STANDARD_DEVIATION	READ_PAIRS	PAIR_ORIENTATION	WIDTH_OF_10_PERCENT	WIDTH_OF_20_PERCENT	WIDTH_OF_30_PERCENT	WIDTH_OF_40_PERCENT	WIDTH_OF_50_PERCENT	WIDTH_OF_60_PERCENT	WIDTH_OF_70_PERCENT	WIDTH_OF_80_PERCENT	WIDTH_OF_90_PERCENT	WIDTH_OF_95_PERCENT	WIDTH_OF_99_PERCENT	SAMPLE	LIBRARY	READ_GROUP
53	26	26	14	74985	55.920728	32.729725	1888	FR	9	17	29	43	53	55	63	75	91	109	749			

## HISTOGRAM	java.lang.Integer
insert_size	All_Reads.fr_count
14	3
15	42
16	42
17	20
18	21
19	15
20	20
21	30
22	26
23	29
24	41
25	27
26	112
27	59
28	51
29	27
30	13
31	14
32	41
33	16
34	9
35	9
36	4
37	4
38	4
39	2
40	3
41	10
42	7
43	24
44	15
45	42
46	4
47	50
48	16
49	8
50	20
51	42
52	16
53	16
54	21
55	25
56	33
57	20
58	32
59	34
60	21
61	10
62	15
63	14
64	11
65	21
66	21
67	18
68	19
69	20
70	15
71	13
72	23
73	6
74	21
75	11
76	14
77	17
78	19
79	16
80	9
81	16
82	16
83	20
84	13
85	12
86	11
87	17
88	12
89	11
90	14
91	19
92	16
93	14
94	14
95	15
96	10
97	12
98	11
99	17
100	13
101	15
102	6
103	12
104	3
105	8
106	7
107	7
108	12
109	3
110	4
111	2
112	2
113	2
114	1
116	4
121	3
122	1
123	3
125	4
127	1
128	1
130	2
131	1
132	2
133	1
137	2
138	1
153	2
157	2
163	3
177	1
178	2
190	1
210	1
211	1
229	2
255	1
271	2
278	1
289	1
293	1