Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/70f2bd4f562dbd8a8d550d71b2b6d8/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/8995c261ad27ca9d8a49ac6a05d9b3/aih-tih-sc-6c4b48-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/8f91ac287291b29dd045d81e215012/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/be/8f91ac287291b29dd045d81e215012/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
XPO1--FAM161A
starfusion
arriba
LUC7L3--SERHL
starfusion
arriba
SNX31--P3H2
starfusion
arriba
CYP20A1--NBEAL1
starfusion
arriba
RIT1--SMG5
starfusion
arriba
PRDM15--YIF1B
starfusion
arriba
TEPSIN--NPLOC4
starfusion
arriba
RCAN3--GRHL3
starfusion
arriba
MRPL48--PLEKHB1
starfusion
arriba
PARP8--RASGRF2
starfusion
arriba
SFI1--RNF185
starfusion
arriba
SPINT2--SIPA1L3
starfusion
CAMK1D--ZNF345
starfusion
PNPO--KPNB1
starfusion
arriba
NLRC5--NUP93
starfusion
arriba
VCL--USP54
starfusion
arriba
BCKDHA--ANKRD27
starfusion
arriba
EML1--SLC20A2
starfusion
arriba
NFRKB--ZBTB44
starfusion
arriba
TLK2--AC240565.1
starfusion
AC060780.1--ANKS1A
starfusion
ARG2--MPP5
starfusion
arriba
TBC1D19--RBPJ
starfusion
UBE2Q2P1--GOLGA6L10
starfusion
STX16--NPEPL1
starfusion
arriba
PCDHA6--PCDHA13
arriba
PCDHA6--PCDHAC2
arriba
PCDHA6--PCDHAC1
arriba
SORBS2--ZAR1
arriba
LRRC1--RPL31P33
arriba
RBM14--RBM4
arriba
TVP23C--CDRT4
arriba
HAVCR2--HAVCR2
arriba
SLC10A4--SORBS2
arriba
ITCH--AL031668.2
arriba
ITCH--ASIP
arriba
NCOR1--FTLP12
arriba
METTL17--PRR14L
arriba
TLK2--FAM157A
arriba
0%| | 0/39 [00:00<?, ?it/s]
Processing XPO1--FAM161A: 0%| | 0/39 [00:00<?, ?it/s]
Processing XPO1--FAM161A: 3%|▎ | 1/39 [00:00<00:04, 8.39it/s]
Processing LUC7L3--SERHL: 3%|▎ | 1/39 [00:00<00:04, 8.39it/s]
Processing LUC7L3--SERHL: 5%|▌ | 2/39 [00:00<00:04, 8.81it/s]
Processing SNX31--P3H2: 5%|▌ | 2/39 [00:00<00:04, 8.81it/s]
Processing SNX31--P3H2: 8%|▊ | 3/39 [00:00<00:03, 9.05it/s]
Processing CYP20A1--NBEAL1: 8%|▊ | 3/39 [00:00<00:03, 9.05it/s]
Processing CYP20A1--NBEAL1: 10%|█ | 4/39 [00:00<00:03, 9.17it/s]
Processing RIT1--SMG5: 10%|█ | 4/39 [00:00<00:03, 9.17it/s]
Processing RIT1--SMG5: 13%|█▎ | 5/39 [00:00<00:03, 9.17it/s]
Processing PRDM15--YIF1B: 13%|█▎ | 5/39 [00:00<00:03, 9.17it/s]
Processing PRDM15--YIF1B: 15%|█▌ | 6/39 [00:00<00:03, 9.22it/s]
Processing TEPSIN--NPLOC4: 15%|█▌ | 6/39 [00:00<00:03, 9.22it/s]
Processing TEPSIN--NPLOC4: 18%|█▊ | 7/39 [00:00<00:03, 9.26it/s]
Processing RCAN3--GRHL3: 18%|█▊ | 7/39 [00:00<00:03, 9.26it/s]
Processing RCAN3--GRHL3: 21%|██ | 8/39 [00:00<00:03, 9.23it/s]
Processing MRPL48--PLEKHB1: 21%|██ | 8/39 [00:00<00:03, 9.23it/s]
Processing MRPL48--PLEKHB1: 23%|██▎ | 9/39 [00:00<00:03, 9.25it/s]
Processing PARP8--RASGRF2: 23%|██▎ | 9/39 [00:00<00:03, 9.25it/s]
Processing PARP8--RASGRF2: 26%|██▌ | 10/39 [00:01<00:03, 9.27it/s]
Processing SFI1--RNF185: 26%|██▌ | 10/39 [00:01<00:03, 9.27it/s]
Processing SFI1--RNF185: 28%|██▊ | 11/39 [00:01<00:03, 9.29it/s]
Processing SPINT2--SIPA1L3: 28%|██▊ | 11/39 [00:01<00:03, 9.29it/s]
Processing SPINT2--SIPA1L3: 31%|███ | 12/39 [00:01<00:02, 9.29it/s]
Processing CAMK1D--ZNF345: 31%|███ | 12/39 [00:01<00:02, 9.29it/s]
Processing CAMK1D--ZNF345: 33%|███▎ | 13/39 [00:01<00:02, 9.27it/s]
Processing PNPO--KPNB1: 33%|███▎ | 13/39 [00:01<00:02, 9.27it/s]
Processing PNPO--KPNB1: 36%|███▌ | 14/39 [00:01<00:02, 9.29it/s]
Processing NLRC5--NUP93: 36%|███▌ | 14/39 [00:01<00:02, 9.29it/s]
Processing NLRC5--NUP93: 38%|███▊ | 15/39 [00:01<00:02, 9.25it/s]
Processing VCL--USP54: 38%|███▊ | 15/39 [00:01<00:02, 9.25it/s]
Processing VCL--USP54: 41%|████ | 16/39 [00:01<00:02, 9.28it/s]
Processing BCKDHA--ANKRD27: 41%|████ | 16/39 [00:01<00:02, 9.28it/s]
Processing BCKDHA--ANKRD27: 44%|████▎ | 17/39 [00:01<00:02, 9.27it/s]
Processing EML1--SLC20A2: 44%|████▎ | 17/39 [00:01<00:02, 9.27it/s]
Processing EML1--SLC20A2: 46%|████▌ | 18/39 [00:01<00:02, 9.30it/s]
Processing NFRKB--ZBTB44: 46%|████▌ | 18/39 [00:01<00:02, 9.30it/s]
Processing NFRKB--ZBTB44: 49%|████▊ | 19/39 [00:02<00:02, 9.29it/s]
Processing TLK2--AC240565.1: 49%|████▊ | 19/39 [00:02<00:02, 9.29it/s]
Processing TLK2--AC240565.1: 51%|█████▏ | 20/39 [00:02<00:02, 9.26it/s]
Processing AC060780.1--ANKS1A: 51%|█████▏ | 20/39 [00:02<00:02, 9.26it/s]
Processing AC060780.1--ANKS1A: 54%|█████▍ | 21/39 [00:02<00:01, 9.28it/s]
Processing ARG2--MPP5: 54%|█████▍ | 21/39 [00:02<00:01, 9.28it/s]
Processing ARG2--MPP5: 56%|█████▋ | 22/39 [00:02<00:01, 9.29it/s]
Processing TBC1D19--RBPJ: 56%|█████▋ | 22/39 [00:02<00:01, 9.29it/s]
Processing TBC1D19--RBPJ: 59%|█████▉ | 23/39 [00:02<00:01, 9.29it/s]
Processing UBE2Q2P1--GOLGA6L10: 59%|█████▉ | 23/39 [00:02<00:01, 9.29it/s]
Processing UBE2Q2P1--GOLGA6L10: 62%|██████▏ | 24/39 [00:02<00:01, 9.30it/s]
Processing STX16--NPEPL1: 62%|██████▏ | 24/39 [00:02<00:01, 9.30it/s]
Processing STX16--NPEPL1: 64%|██████▍ | 25/39 [00:02<00:01, 9.32it/s]
Processing PCDHA6--PCDHA13: 64%|██████▍ | 25/39 [00:02<00:01, 9.32it/s]
Processing PCDHA6--PCDHA13: 67%|██████▋ | 26/39 [00:02<00:01, 9.28it/s]
Processing PCDHA6--PCDHAC2: 67%|██████▋ | 26/39 [00:02<00:01, 9.28it/s]
Processing PCDHA6--PCDHAC2: 69%|██████▉ | 27/39 [00:02<00:01, 9.26it/s]
Processing PCDHA6--PCDHAC1: 69%|██████▉ | 27/39 [00:02<00:01, 9.26it/s]
Processing PCDHA6--PCDHAC1: 72%|███████▏ | 28/39 [00:03<00:01, 9.29it/s]
Processing SORBS2--ZAR1: 72%|███████▏ | 28/39 [00:03<00:01, 9.29it/s]
Processing SORBS2--ZAR1: 74%|███████▍ | 29/39 [00:03<00:01, 9.24it/s]
Processing LRRC1--RPL31P33: 74%|███████▍ | 29/39 [00:03<00:01, 9.24it/s]
Processing LRRC1--RPL31P33: 77%|███████▋ | 30/39 [00:03<00:00, 9.26it/s]
Processing RBM14--RBM4: 77%|███████▋ | 30/39 [00:03<00:00, 9.26it/s]
Processing RBM14--RBM4: 79%|███████▉ | 31/39 [00:03<00:00, 9.30it/s]
Processing TVP23C--CDRT4: 79%|███████▉ | 31/39 [00:03<00:00, 9.30it/s]
Processing TVP23C--CDRT4: 82%|████████▏ | 32/39 [00:03<00:00, 9.31it/s]
Processing HAVCR2--HAVCR2: 82%|████████▏ | 32/39 [00:03<00:00, 9.31it/s]
Processing HAVCR2--HAVCR2: 85%|████████▍ | 33/39 [00:03<00:00, 9.29it/s]
Processing SLC10A4--SORBS2: 85%|████████▍ | 33/39 [00:03<00:00, 9.29it/s]
Processing SLC10A4--SORBS2: 87%|████████▋ | 34/39 [00:03<00:00, 9.30it/s]
Processing ITCH--AL031668.2: 87%|████████▋ | 34/39 [00:03<00:00, 9.30it/s]
Processing ITCH--AL031668.2: 90%|████████▉ | 35/39 [00:03<00:00, 9.31it/s]
Processing ITCH--ASIP: 90%|████████▉ | 35/39 [00:03<00:00, 9.31it/s]
Processing ITCH--ASIP: 92%|█████████▏| 36/39 [00:03<00:00, 9.28it/s]
Processing NCOR1--FTLP12: 92%|█████████▏| 36/39 [00:03<00:00, 9.28it/s]
Processing NCOR1--FTLP12: 95%|█████████▍| 37/39 [00:04<00:00, 9.19it/s]
Processing METTL17--PRR14L: 95%|█████████▍| 37/39 [00:04<00:00, 9.19it/s]
Processing METTL17--PRR14L: 97%|█████████▋| 38/39 [00:04<00:00, 9.23it/s]
Processing TLK2--FAM157A: 97%|█████████▋| 38/39 [00:04<00:00, 9.23it/s]
Processing TLK2--FAM157A: 100%|██████████| 39/39 [00:04<00:00, 9.26it/s]
Processing TLK2--FAM157A: 100%|██████████| 39/39 [00:04<00:00, 9.25it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory