Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/3474f0840fb85346238d4688293a58/aih-tih-sc-377071-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8b/922c689b77c51f8f6a6be5e1144126/aih-tih-sc-377071-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/33464588d14cdff9be1c5839769105/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/33464588d14cdff9be1c5839769105/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
STAT3--ACLY
starfusion
arriba
LAMA3--RMC1
starfusion
arriba
STK3--DPH6
starfusion
arriba
SNTA1--EIF2S2
starfusion
arriba
MSI2--AC004448.2
starfusion
arriba
TLK2--AC240565.1
starfusion
EGF--LINC01722
starfusion
arriba
STX16--NPEPL1
starfusion
arriba
DPH6--STK3
starfusion
AC005993.1--RGS6
starfusion
arriba
GUCY1B2--NKAIN2
starfusion
TVP23C--CDRT4
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGA2--PCDHGA8
arriba
PCDHGA2--PCDHGB6
arriba
PCDHGA2--PCDHGC5
arriba
PCDHGA5--PCDHGA8
arriba
PCDHGA2--PCDHGC4
arriba
PCDHGA2--PCDHGC3
arriba
PCDHGA5--PCDHGB6
arriba
PCDHGA5--PCDHGC5
arriba
PCDHGA2--PCDHGA11
arriba
PCDHGA5--PCDHGC4
arriba
PCDHGA2--PCDHGA9
arriba
PCDHGA2--PCDHGB7
arriba
PCDHGA5--PCDHGC3
arriba
PCDHGA5--PCDHGA11
arriba
PCDHGA2--PCDHGA12
arriba
PCDHGA2--PCDHGA10
arriba
PCDHGA5--PCDHGA9
arriba
PCDHGA5--PCDHGB7
arriba
PCDHGA5--PCDHGA12
arriba
PCDHGA5--PCDHGA10
arriba
PCDHGB3--PCDHGA8
arriba
PCDHGB3--PCDHGB6
arriba
PCDHGB3--PCDHGC5
arriba
PCDHGB3--PCDHGC4
arriba
PCDHGB3--PCDHGC3
arriba
PCDHGB3--PCDHGA11
arriba
PCDHGB3--PCDHGA9
arriba
PCDHGB3--PCDHGB7
arriba
PCDHGB3--PCDHGA12
arriba
PCDHGB3--PCDHGA10
arriba
PCDHA10--PCDHAC2
arriba
PCDHA10--PCDHAC1
arriba
PCDHGA6--PCDHGA8
arriba
PCDHGA6--PCDHGB6
arriba
PCDHGA6--PCDHGC5
arriba
PCDHGA6--PCDHGC4
arriba
PCDHA10--PCDHA13
arriba
PCDHGA6--PCDHGC3
arriba
PCDHGA6--PCDHGA11
arriba
PCDHGA6--PCDHGA9
arriba
PCDHGA6--PCDHGB7
arriba
PCDHGA6--PCDHGA12
arriba
PCDHGA6--PCDHGA10
arriba
AC092807.3--DDAH1
arriba
AC015911.9--SLFN12L
arriba
EGF--LINC01723
arriba
DNAJA3--PRSS27
arriba
FGGY--LINC01725
arriba
TUBB4BP8--DUSP10
arriba
PAICSP7--DUSP10
arriba
PSMD11--ACLY
arriba
STON1--GTF2A1L
arriba
EFL1--GOLGA6L11P
arriba
MKNK1--DMBX1
arriba
EGF--SPTLC3
arriba
0%| | 0/77 [00:00<?, ?it/s]
Processing STAT3--ACLY: 0%| | 0/77 [00:00<?, ?it/s]
Processing STAT3--ACLY: 1%|▏ | 1/77 [00:00<00:08, 8.69it/s]
Processing LAMA3--RMC1: 1%|▏ | 1/77 [00:00<00:08, 8.69it/s]
Processing LAMA3--RMC1: 3%|▎ | 2/77 [00:00<00:08, 9.07it/s]
Processing STK3--DPH6: 3%|▎ | 2/77 [00:00<00:08, 9.07it/s]
Processing STK3--DPH6: 4%|▍ | 3/77 [00:00<00:08, 9.20it/s]
Processing SNTA1--EIF2S2: 4%|▍ | 3/77 [00:00<00:08, 9.20it/s]
Processing SNTA1--EIF2S2: 5%|▌ | 4/77 [00:00<00:07, 9.27it/s]
Processing MSI2--AC004448.2: 5%|▌ | 4/77 [00:00<00:07, 9.27it/s]
Processing MSI2--AC004448.2: 6%|▋ | 5/77 [00:00<00:07, 9.30it/s]
Processing TLK2--AC240565.1: 6%|▋ | 5/77 [00:00<00:07, 9.30it/s]
Processing TLK2--AC240565.1: 8%|▊ | 6/77 [00:00<00:07, 9.32it/s]
Processing EGF--LINC01722: 8%|▊ | 6/77 [00:00<00:07, 9.32it/s]
Processing EGF--LINC01722: 9%|▉ | 7/77 [00:00<00:07, 9.34it/s]
Processing STX16--NPEPL1: 9%|▉ | 7/77 [00:00<00:07, 9.34it/s]
Processing STX16--NPEPL1: 10%|█ | 8/77 [00:00<00:07, 9.34it/s]
Processing DPH6--STK3: 10%|█ | 8/77 [00:00<00:07, 9.34it/s]
Processing DPH6--STK3: 12%|█▏ | 9/77 [00:00<00:07, 9.35it/s]
Processing AC005993.1--RGS6: 12%|█▏ | 9/77 [00:00<00:07, 9.35it/s]
Processing AC005993.1--RGS6: 13%|█▎ | 10/77 [00:01<00:07, 9.36it/s]
Processing GUCY1B2--NKAIN2: 13%|█▎ | 10/77 [00:01<00:07, 9.36it/s]
Processing GUCY1B2--NKAIN2: 14%|█▍ | 11/77 [00:01<00:07, 9.36it/s]
Processing TVP23C--CDRT4: 14%|█▍ | 11/77 [00:01<00:07, 9.36it/s]
Processing TVP23C--CDRT4: 16%|█▌ | 12/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGA8: 16%|█▌ | 12/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGA8: 17%|█▋ | 13/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGB6: 17%|█▋ | 13/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGB6: 18%|█▊ | 14/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGC5: 18%|█▊ | 14/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGC5: 19%|█▉ | 15/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGC4: 19%|█▉ | 15/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGC4: 21%|██ | 16/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGC3: 21%|██ | 16/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGC3: 22%|██▏ | 17/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGA11: 22%|██▏ | 17/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGA11: 23%|██▎ | 18/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGA9: 23%|██▎ | 18/77 [00:01<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGA9: 25%|██▍ | 19/77 [00:02<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGB7: 25%|██▍ | 19/77 [00:02<00:06, 9.36it/s]
Processing PCDHGB2--PCDHGB7: 26%|██▌ | 20/77 [00:02<00:06, 9.37it/s]
Processing PCDHGB2--PCDHGA12: 26%|██▌ | 20/77 [00:02<00:06, 9.37it/s]
Processing PCDHGB2--PCDHGA12: 27%|██▋ | 21/77 [00:02<00:05, 9.36it/s]
Processing PCDHGB2--PCDHGA10: 27%|██▋ | 21/77 [00:02<00:05, 9.36it/s]
Processing PCDHGB2--PCDHGA10: 29%|██▊ | 22/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGA8: 29%|██▊ | 22/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGA8: 30%|██▉ | 23/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGB6: 30%|██▉ | 23/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGB6: 31%|███ | 24/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGC5: 31%|███ | 24/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGC5: 32%|███▏ | 25/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA5--PCDHGA8: 32%|███▏ | 25/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA5--PCDHGA8: 34%|███▍ | 26/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGC4: 34%|███▍ | 26/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGC4: 35%|███▌ | 27/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGC3: 35%|███▌ | 27/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGC3: 36%|███▋ | 28/77 [00:02<00:05, 9.36it/s]
Processing PCDHGA5--PCDHGB6: 36%|███▋ | 28/77 [00:03<00:05, 9.36it/s]
Processing PCDHGA5--PCDHGB6: 38%|███▊ | 29/77 [00:03<00:05, 9.36it/s]
Processing PCDHGA5--PCDHGC5: 38%|███▊ | 29/77 [00:03<00:05, 9.36it/s]
Processing PCDHGA5--PCDHGC5: 39%|███▉ | 30/77 [00:03<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGA11: 39%|███▉ | 30/77 [00:03<00:05, 9.36it/s]
Processing PCDHGA2--PCDHGA11: 40%|████ | 31/77 [00:03<00:04, 9.37it/s]
Processing PCDHGA5--PCDHGC4: 40%|████ | 31/77 [00:03<00:04, 9.37it/s]
Processing PCDHGA5--PCDHGC4: 42%|████▏ | 32/77 [00:03<00:04, 9.37it/s]
Processing PCDHGA2--PCDHGA9: 42%|████▏ | 32/77 [00:03<00:04, 9.37it/s]
Processing PCDHGA2--PCDHGA9: 43%|████▎ | 33/77 [00:03<00:04, 9.37it/s]
Processing PCDHGA2--PCDHGB7: 43%|████▎ | 33/77 [00:03<00:04, 9.37it/s]
Processing PCDHGA2--PCDHGB7: 44%|████▍ | 34/77 [00:03<00:04, 9.37it/s]
Processing PCDHGA5--PCDHGC3: 44%|████▍ | 34/77 [00:03<00:04, 9.37it/s]
Processing PCDHGA5--PCDHGC3: 45%|████▌ | 35/77 [00:03<00:04, 9.37it/s]
Processing PCDHGA5--PCDHGA11: 45%|████▌ | 35/77 [00:03<00:04, 9.37it/s]
Processing PCDHGA5--PCDHGA11: 47%|████▋ | 36/77 [00:03<00:04, 9.36it/s]
Processing PCDHGA2--PCDHGA12: 47%|████▋ | 36/77 [00:03<00:04, 9.36it/s]
Processing PCDHGA2--PCDHGA12: 48%|████▊ | 37/77 [00:03<00:04, 9.36it/s]
Processing PCDHGA2--PCDHGA10: 48%|████▊ | 37/77 [00:03<00:04, 9.36it/s]
Processing PCDHGA2--PCDHGA10: 49%|████▉ | 38/77 [00:04<00:04, 9.36it/s]
Processing PCDHGA5--PCDHGA9: 49%|████▉ | 38/77 [00:04<00:04, 9.36it/s]
Processing PCDHGA5--PCDHGA9: 51%|█████ | 39/77 [00:04<00:04, 9.36it/s]
Processing PCDHGA5--PCDHGB7: 51%|█████ | 39/77 [00:04<00:04, 9.36it/s]
Processing PCDHGA5--PCDHGB7: 52%|█████▏ | 40/77 [00:04<00:03, 9.36it/s]
Processing PCDHGA5--PCDHGA12: 52%|█████▏ | 40/77 [00:04<00:03, 9.36it/s]
Processing PCDHGA5--PCDHGA12: 53%|█████▎ | 41/77 [00:04<00:03, 9.36it/s]
Processing PCDHGA5--PCDHGA10: 53%|█████▎ | 41/77 [00:04<00:03, 9.36it/s]
Processing PCDHGA5--PCDHGA10: 55%|█████▍ | 42/77 [00:04<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGA8: 55%|█████▍ | 42/77 [00:04<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGA8: 56%|█████▌ | 43/77 [00:04<00:03, 9.37it/s]
Processing PCDHGB3--PCDHGB6: 56%|█████▌ | 43/77 [00:04<00:03, 9.37it/s]
Processing PCDHGB3--PCDHGB6: 57%|█████▋ | 44/77 [00:04<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGC5: 57%|█████▋ | 44/77 [00:04<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGC5: 58%|█████▊ | 45/77 [00:04<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGC4: 58%|█████▊ | 45/77 [00:04<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGC4: 60%|█████▉ | 46/77 [00:04<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGC3: 60%|█████▉ | 46/77 [00:04<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGC3: 61%|██████ | 47/77 [00:05<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGA11: 61%|██████ | 47/77 [00:05<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGA11: 62%|██████▏ | 48/77 [00:05<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGA9: 62%|██████▏ | 48/77 [00:05<00:03, 9.36it/s]
Processing PCDHGB3--PCDHGA9: 64%|██████▎ | 49/77 [00:05<00:02, 9.36it/s]
Processing PCDHGB3--PCDHGB7: 64%|██████▎ | 49/77 [00:05<00:02, 9.36it/s]
Processing PCDHGB3--PCDHGB7: 65%|██████▍ | 50/77 [00:05<00:02, 9.36it/s]
Processing PCDHGB3--PCDHGA12: 65%|██████▍ | 50/77 [00:05<00:02, 9.36it/s]
Processing PCDHGB3--PCDHGA12: 66%|██████▌ | 51/77 [00:05<00:02, 9.36it/s]
Processing PCDHGB3--PCDHGA10: 66%|██████▌ | 51/77 [00:05<00:02, 9.36it/s]
Processing PCDHGB3--PCDHGA10: 68%|██████▊ | 52/77 [00:05<00:02, 9.36it/s]
Processing PCDHA10--PCDHAC2: 68%|██████▊ | 52/77 [00:05<00:02, 9.36it/s]
Processing PCDHA10--PCDHAC2: 69%|██████▉ | 53/77 [00:05<00:02, 9.36it/s]
Processing PCDHA10--PCDHAC1: 69%|██████▉ | 53/77 [00:05<00:02, 9.36it/s]
Processing PCDHA10--PCDHAC1: 70%|███████ | 54/77 [00:05<00:02, 9.36it/s]
Processing PCDHGA6--PCDHGA8: 70%|███████ | 54/77 [00:05<00:02, 9.36it/s]
Processing PCDHGA6--PCDHGA8: 71%|███████▏ | 55/77 [00:05<00:02, 9.36it/s]
Processing PCDHGA6--PCDHGB6: 71%|███████▏ | 55/77 [00:05<00:02, 9.36it/s]
Processing PCDHGA6--PCDHGB6: 73%|███████▎ | 56/77 [00:05<00:02, 9.36it/s]
Processing PCDHGA6--PCDHGC5: 73%|███████▎ | 56/77 [00:05<00:02, 9.36it/s]
Processing PCDHGA6--PCDHGC5: 74%|███████▍ | 57/77 [00:06<00:02, 9.36it/s]
Processing PCDHGA6--PCDHGC4: 74%|███████▍ | 57/77 [00:06<00:02, 9.36it/s]
Processing PCDHGA6--PCDHGC4: 75%|███████▌ | 58/77 [00:06<00:02, 9.36it/s]
Processing PCDHA10--PCDHA13: 75%|███████▌ | 58/77 [00:06<00:02, 9.36it/s]
Processing PCDHA10--PCDHA13: 77%|███████▋ | 59/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGC3: 77%|███████▋ | 59/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGC3: 78%|███████▊ | 60/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGA11: 78%|███████▊ | 60/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGA11: 79%|███████▉ | 61/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGA9: 79%|███████▉ | 61/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGA9: 81%|████████ | 62/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGB7: 81%|████████ | 62/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGB7: 82%|████████▏ | 63/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGA12: 82%|████████▏ | 63/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGA12: 83%|████████▎ | 64/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGA10: 83%|████████▎ | 64/77 [00:06<00:01, 9.36it/s]
Processing PCDHGA6--PCDHGA10: 84%|████████▍ | 65/77 [00:06<00:01, 9.36it/s]
Processing AC092807.3--DDAH1: 84%|████████▍ | 65/77 [00:06<00:01, 9.36it/s]
Processing AC092807.3--DDAH1: 86%|████████▌ | 66/77 [00:07<00:01, 9.37it/s]
Processing AC015911.9--SLFN12L: 86%|████████▌ | 66/77 [00:07<00:01, 9.37it/s]
Processing AC015911.9--SLFN12L: 87%|████████▋ | 67/77 [00:07<00:01, 9.36it/s]
Processing EGF--LINC01723: 87%|████████▋ | 67/77 [00:07<00:01, 9.36it/s]
Processing EGF--LINC01723: 88%|████████▊ | 68/77 [00:07<00:00, 9.36it/s]
Processing DNAJA3--PRSS27: 88%|████████▊ | 68/77 [00:07<00:00, 9.36it/s]
Processing DNAJA3--PRSS27: 90%|████████▉ | 69/77 [00:07<00:00, 9.36it/s]
Processing FGGY--LINC01725: 90%|████████▉ | 69/77 [00:07<00:00, 9.36it/s]
Processing FGGY--LINC01725: 91%|█████████ | 70/77 [00:07<00:00, 9.36it/s]
Processing TUBB4BP8--DUSP10: 91%|█████████ | 70/77 [00:07<00:00, 9.36it/s]
Processing TUBB4BP8--DUSP10: 92%|█████████▏| 71/77 [00:07<00:00, 9.36it/s]
Processing PAICSP7--DUSP10: 92%|█████████▏| 71/77 [00:07<00:00, 9.36it/s]
Processing PAICSP7--DUSP10: 94%|█████████▎| 72/77 [00:07<00:00, 9.34it/s]
Processing PSMD11--ACLY: 94%|█████████▎| 72/77 [00:07<00:00, 9.34it/s]
Processing PSMD11--ACLY: 95%|█████████▍| 73/77 [00:07<00:00, 9.35it/s]
Processing STON1--GTF2A1L: 95%|█████████▍| 73/77 [00:07<00:00, 9.35it/s]
Processing STON1--GTF2A1L: 96%|█████████▌| 74/77 [00:07<00:00, 9.35it/s]
Processing EFL1--GOLGA6L11P: 96%|█████████▌| 74/77 [00:07<00:00, 9.35it/s]
Processing EFL1--GOLGA6L11P: 97%|█████████▋| 75/77 [00:08<00:00, 9.36it/s]
Processing MKNK1--DMBX1: 97%|█████████▋| 75/77 [00:08<00:00, 9.36it/s]
Processing MKNK1--DMBX1: 99%|█████████▊| 76/77 [00:08<00:00, 9.36it/s]
Processing EGF--SPTLC3: 99%|█████████▊| 76/77 [00:08<00:00, 9.36it/s]
Processing EGF--SPTLC3: 100%|██████████| 77/77 [00:08<00:00, 9.36it/s]
Processing EGF--SPTLC3: 100%|██████████| 77/77 [00:08<00:00, 9.35it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory