Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/fa30cda2ee6ad5883585bbc3ab3b30/aih-tih-sc-69be7e-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/f9ba552338ab574bbc5e0aad33f521/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/f9ba552338ab574bbc5e0aad33f521/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/03a7be65a0b8047c302aa7d9ad9abb/aih-tih-sc-69be7e-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
SLBP--LETM1
starfusion
arriba
HNRNPR--TCEA3
starfusion
arriba
ANO6--ARID2
starfusion
VOPP1--TNS3
starfusion
arriba
MAP4K3--CRHR2
starfusion
arriba
TLK2--FAM157A
starfusion
arriba
DHRS2--GSTM2
starfusion
WWTR1--AC079841.2
starfusion
ARID1B--AFDN
starfusion
BRPF1--ATG7
starfusion
arriba
SPPL2B--PSPN
starfusion
FBXO25--AC240565.1
starfusion
STX16--NPEPL1
arriba
AC005993.1--RGS6
arriba
TVP23C--CDRT4
arriba
AP000347.1--IGLL1
arriba
CCDC169--SOHLH2
arriba
SLBP--NSD2
arriba
0%| | 0/18 [00:00<?, ?it/s]
Processing SLBP--LETM1: 0%| | 0/18 [00:00<?, ?it/s]
Processing SLBP--LETM1: 6%|▌ | 1/18 [00:00<00:01, 8.76it/s]
Processing HNRNPR--TCEA3: 6%|▌ | 1/18 [00:00<00:01, 8.76it/s]
Processing HNRNPR--TCEA3: 11%|█ | 2/18 [00:00<00:01, 9.11it/s]
Processing ANO6--ARID2: 11%|█ | 2/18 [00:00<00:01, 9.11it/s]
Processing ANO6--ARID2: 17%|█▋ | 3/18 [00:00<00:01, 9.23it/s]
Processing VOPP1--TNS3: 17%|█▋ | 3/18 [00:00<00:01, 9.23it/s]
Processing VOPP1--TNS3: 22%|██▏ | 4/18 [00:00<00:01, 9.30it/s]
Processing MAP4K3--CRHR2: 22%|██▏ | 4/18 [00:00<00:01, 9.30it/s]
Processing MAP4K3--CRHR2: 28%|██▊ | 5/18 [00:00<00:01, 9.35it/s]
Processing TLK2--FAM157A: 28%|██▊ | 5/18 [00:00<00:01, 9.35it/s]
Processing TLK2--FAM157A: 33%|███▎ | 6/18 [00:00<00:01, 9.39it/s]
Processing DHRS2--GSTM2: 33%|███▎ | 6/18 [00:00<00:01, 9.39it/s]
Processing DHRS2--GSTM2: 39%|███▉ | 7/18 [00:00<00:01, 9.41it/s]
Processing WWTR1--AC079841.2: 39%|███▉ | 7/18 [00:00<00:01, 9.41it/s]
Processing WWTR1--AC079841.2: 44%|████▍ | 8/18 [00:00<00:01, 9.42it/s]
Processing ARID1B--AFDN: 44%|████▍ | 8/18 [00:00<00:01, 9.42it/s]
Processing ARID1B--AFDN: 50%|█████ | 9/18 [00:00<00:00, 9.43it/s]
Processing BRPF1--ATG7: 50%|█████ | 9/18 [00:00<00:00, 9.43it/s]
Processing BRPF1--ATG7: 56%|█████▌ | 10/18 [00:01<00:00, 9.44it/s]
Processing SPPL2B--PSPN: 56%|█████▌ | 10/18 [00:01<00:00, 9.44it/s]
Processing SPPL2B--PSPN: 61%|██████ | 11/18 [00:01<00:00, 9.44it/s]
Processing FBXO25--AC240565.1: 61%|██████ | 11/18 [00:01<00:00, 9.44it/s]
Processing FBXO25--AC240565.1: 67%|██████▋ | 12/18 [00:01<00:00, 9.43it/s]
Processing STX16--NPEPL1: 67%|██████▋ | 12/18 [00:01<00:00, 9.43it/s]
Processing STX16--NPEPL1: 72%|███████▏ | 13/18 [00:01<00:00, 9.43it/s]
Processing AC005993.1--RGS6: 72%|███████▏ | 13/18 [00:01<00:00, 9.43it/s]
Processing AC005993.1--RGS6: 78%|███████▊ | 14/18 [00:01<00:00, 9.44it/s]
Processing TVP23C--CDRT4: 78%|███████▊ | 14/18 [00:01<00:00, 9.44it/s]
Processing TVP23C--CDRT4: 83%|████████▎ | 15/18 [00:01<00:00, 9.44it/s]
Processing AP000347.1--IGLL1: 83%|████████▎ | 15/18 [00:01<00:00, 9.44it/s]
Processing AP000347.1--IGLL1: 89%|████████▉ | 16/18 [00:01<00:00, 9.45it/s]
Processing CCDC169--SOHLH2: 89%|████████▉ | 16/18 [00:01<00:00, 9.45it/s]
Processing CCDC169--SOHLH2: 94%|█████████▍| 17/18 [00:01<00:00, 9.45it/s]
Processing SLBP--NSD2: 94%|█████████▍| 17/18 [00:01<00:00, 9.45it/s]
Processing SLBP--NSD2: 100%|██████████| 18/18 [00:01<00:00, 9.44it/s]
Processing SLBP--NSD2: 100%|██████████| 18/18 [00:01<00:00, 9.39it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory