/usr/local/bin/picard: line 5: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8): No such file or directory
INFO	2026-06-03 19:56:27	RExecutor	Executing R script via command: Rscript /tmp/script3923747276870463407.R
ERROR	2026-06-03 19:56:27	ProcessExecutor	/bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 19:56:27	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 19:56:27	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 19:56:27	ProcessExecutor	During startup - Warning messages:
ERROR	2026-06-03 19:56:27	ProcessExecutor	1: Setting LC_CTYPE failed, using "C" 
ERROR	2026-06-03 19:56:27	ProcessExecutor	2: Setting LC_COLLATE failed, using "C" 
ERROR	2026-06-03 19:56:27	ProcessExecutor	3: Setting LC_TIME failed, using "C" 
ERROR	2026-06-03 19:56:27	ProcessExecutor	4: Setting LC_MESSAGES failed, using "C" 
ERROR	2026-06-03 19:56:27	ProcessExecutor	5: Setting LC_MONETARY failed, using "C" 
ERROR	2026-06-03 19:56:27	ProcessExecutor	6: Setting LC_PAPER failed, using "C" 
ERROR	2026-06-03 19:56:27	ProcessExecutor	7: Setting LC_MEASUREMENT failed, using "C" 
INFO	2026-06-03 19:56:27	ProcessExecutor	[1] "Checking if R is installed"
ERROR	2026-06-03 19:56:27	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
Jun 03, 2026 7:56:27 PM com.intel.gkl.NativeLibraryLoader load
INFO: Loading libgkl_compression.so from jar:file:/usr/local/share/picard-3.1.0-0/picard.jar!/com/intel/gkl/native/libgkl_compression.so
[Wed Jun 03 19:56:27 GMT 2026] CollectInsertSizeMetrics --Histogram_FILE aih-tih-sc-242a7d-R1_A23YTGFLT4_1_collectinsertsize.pdf --INPUT aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam --OUTPUT aih-tih-sc-242a7d-R1_A23YTGFLT4_1_collectinsertsize.txt --DEVIATIONS 10.0 --MINIMUM_PCT 0.05 --METRIC_ACCUMULATION_LEVEL ALL_READS --INCLUDE_DUPLICATES false --ASSUME_SORTED true --STOP_AFTER 0 --VERBOSITY INFO --QUIET false --VALIDATION_STRINGENCY STRICT --COMPRESSION_LEVEL 5 --MAX_RECORDS_IN_RAM 500000 --CREATE_INDEX false --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Wed Jun 03 19:56:27 GMT 2026] Executing as ?@nf-dcb024a01530ed4a39f7090f1e13cf26-650d2-ckw69 on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 20-internal-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:3.1.0
INFO	2026-06-03 19:56:29	SinglePassSamProgram	Processed     1,000,000 records.  Elapsed time: 00:00:01s.  Time for last 1,000,000:    1s.  Last read position: chr1:1,296,218
INFO	2026-06-03 19:56:31	SinglePassSamProgram	Processed     2,000,000 records.  Elapsed time: 00:00:03s.  Time for last 1,000,000:    1s.  Last read position: chr1:1,700,288
INFO	2026-06-03 19:56:32	SinglePassSamProgram	Processed     3,000,000 records.  Elapsed time: 00:00:04s.  Time for last 1,000,000:    1s.  Last read position: chr1:6,468,282
INFO	2026-06-03 19:56:33	SinglePassSamProgram	Processed     4,000,000 records.  Elapsed time: 00:00:05s.  Time for last 1,000,000:    1s.  Last read position: chr1:9,749,495
INFO	2026-06-03 19:56:35	SinglePassSamProgram	Processed     5,000,000 records.  Elapsed time: 00:00:07s.  Time for last 1,000,000:    1s.  Last read position: chr1:12,260,975
INFO	2026-06-03 19:56:36	SinglePassSamProgram	Processed     6,000,000 records.  Elapsed time: 00:00:08s.  Time for last 1,000,000:    1s.  Last read position: chr1:16,241,177
INFO	2026-06-03 19:56:38	SinglePassSamProgram	Processed     7,000,000 records.  Elapsed time: 00:00:10s.  Time for last 1,000,000:    1s.  Last read position: chr1:19,172,867
INFO	2026-06-03 19:56:39	SinglePassSamProgram	Processed     8,000,000 records.  Elapsed time: 00:00:11s.  Time for last 1,000,000:    1s.  Last read position: chr1:21,828,952
INFO	2026-06-03 19:56:40	SinglePassSamProgram	Processed     9,000,000 records.  Elapsed time: 00:00:12s.  Time for last 1,000,000:    1s.  Last read position: chr1:22,091,488
INFO	2026-06-03 19:56:41	SinglePassSamProgram	Processed    10,000,000 records.  Elapsed time: 00:00:13s.  Time for last 1,000,000:    0s.  Last read position: chr1:23,442,238
INFO	2026-06-03 19:56:42	SinglePassSamProgram	Processed    11,000,000 records.  Elapsed time: 00:00:15s.  Time for last 1,000,000:    1s.  Last read position: chr1:26,697,153
INFO	2026-06-03 19:56:44	SinglePassSamProgram	Processed    12,000,000 records.  Elapsed time: 00:00:16s.  Time for last 1,000,000:    1s.  Last read position: chr1:28,201,266
INFO	2026-06-03 19:56:45	SinglePassSamProgram	Processed    13,000,000 records.  Elapsed time: 00:00:17s.  Time for last 1,000,000:    1s.  Last read position: chr1:31,672,458
INFO	2026-06-03 19:56:46	SinglePassSamProgram	Processed    14,000,000 records.  Elapsed time: 00:00:18s.  Time for last 1,000,000:    1s.  Last read position: chr1:32,771,067
INFO	2026-06-03 19:56:48	SinglePassSamProgram	Processed    15,000,000 records.  Elapsed time: 00:00:20s.  Time for last 1,000,000:    1s.  Last read position: chr1:36,137,254
INFO	2026-06-03 19:56:49	SinglePassSamProgram	Processed    16,000,000 records.  Elapsed time: 00:00:21s.  Time for last 1,000,000:    1s.  Last read position: chr1:39,357,578
INFO	2026-06-03 19:56:50	SinglePassSamProgram	Processed    17,000,000 records.  Elapsed time: 00:00:23s.  Time for last 1,000,000:    1s.  Last read position: chr1:41,046,443
INFO	2026-06-03 19:56:52	SinglePassSamProgram	Processed    18,000,000 records.  Elapsed time: 00:00:24s.  Time for last 1,000,000:    1s.  Last read position: chr1:43,617,511
INFO	2026-06-03 19:56:53	SinglePassSamProgram	Processed    19,000,000 records.  Elapsed time: 00:00:26s.  Time for last 1,000,000:    1s.  Last read position: chr1:46,035,466
INFO	2026-06-03 19:56:55	SinglePassSamProgram	Processed    20,000,000 records.  Elapsed time: 00:00:27s.  Time for last 1,000,000:    1s.  Last read position: chr1:52,475,250
INFO	2026-06-03 19:56:57	SinglePassSamProgram	Processed    21,000,000 records.  Elapsed time: 00:00:29s.  Time for last 1,000,000:    1s.  Last read position: chr1:61,787,757
INFO	2026-06-03 19:56:58	SinglePassSamProgram	Processed    22,000,000 records.  Elapsed time: 00:00:30s.  Time for last 1,000,000:    1s.  Last read position: chr1:84,965,695
INFO	2026-06-03 19:57:00	SinglePassSamProgram	Processed    23,000,000 records.  Elapsed time: 00:00:32s.  Time for last 1,000,000:    1s.  Last read position: chr1:97,546,348
INFO	2026-06-03 19:57:01	SinglePassSamProgram	Processed    24,000,000 records.  Elapsed time: 00:00:33s.  Time for last 1,000,000:    1s.  Last read position: chr1:109,280,905
INFO	2026-06-03 19:57:03	SinglePassSamProgram	Processed    25,000,000 records.  Elapsed time: 00:00:35s.  Time for last 1,000,000:    1s.  Last read position: chr1:113,940,659
INFO	2026-06-03 19:57:04	SinglePassSamProgram	Processed    26,000,000 records.  Elapsed time: 00:00:36s.  Time for last 1,000,000:    1s.  Last read position: chr1:119,916,090
INFO	2026-06-03 19:57:06	SinglePassSamProgram	Processed    27,000,000 records.  Elapsed time: 00:00:38s.  Time for last 1,000,000:    1s.  Last read position: chr1:120,578,717
INFO	2026-06-03 19:57:07	SinglePassSamProgram	Processed    28,000,000 records.  Elapsed time: 00:00:39s.  Time for last 1,000,000:    1s.  Last read position: chr1:146,088,491
INFO	2026-06-03 19:57:09	SinglePassSamProgram	Processed    29,000,000 records.  Elapsed time: 00:00:41s.  Time for last 1,000,000:    1s.  Last read position: chr1:148,548,992
INFO	2026-06-03 19:57:10	SinglePassSamProgram	Processed    30,000,000 records.  Elapsed time: 00:00:42s.  Time for last 1,000,000:    1s.  Last read position: chr1:149,480,794
INFO	2026-06-03 19:57:12	SinglePassSamProgram	Processed    31,000,000 records.  Elapsed time: 00:00:44s.  Time for last 1,000,000:    1s.  Last read position: chr1:150,579,220
INFO	2026-06-03 19:57:13	SinglePassSamProgram	Processed    32,000,000 records.  Elapsed time: 00:00:45s.  Time for last 1,000,000:    1s.  Last read position: chr1:151,583,123
INFO	2026-06-03 19:57:15	SinglePassSamProgram	Processed    33,000,000 records.  Elapsed time: 00:00:47s.  Time for last 1,000,000:    1s.  Last read position: chr1:153,960,606
INFO	2026-06-03 19:57:16	SinglePassSamProgram	Processed    34,000,000 records.  Elapsed time: 00:00:48s.  Time for last 1,000,000:    1s.  Last read position: chr1:154,607,936
INFO	2026-06-03 19:57:18	SinglePassSamProgram	Processed    35,000,000 records.  Elapsed time: 00:00:50s.  Time for last 1,000,000:    1s.  Last read position: chr1:155,190,055
INFO	2026-06-03 19:57:20	SinglePassSamProgram	Processed    36,000,000 records.  Elapsed time: 00:00:52s.  Time for last 1,000,000:    1s.  Last read position: chr1:155,729,075
INFO	2026-06-03 19:57:21	SinglePassSamProgram	Processed    37,000,000 records.  Elapsed time: 00:00:53s.  Time for last 1,000,000:    1s.  Last read position: chr1:156,135,965
INFO	2026-06-03 19:57:23	SinglePassSamProgram	Processed    38,000,000 records.  Elapsed time: 00:00:55s.  Time for last 1,000,000:    1s.  Last read position: chr1:156,791,760
INFO	2026-06-03 19:57:24	SinglePassSamProgram	Processed    39,000,000 records.  Elapsed time: 00:00:56s.  Time for last 1,000,000:    1s.  Last read position: chr1:161,042,596
INFO	2026-06-03 19:57:26	SinglePassSamProgram	Processed    40,000,000 records.  Elapsed time: 00:00:58s.  Time for last 1,000,000:    1s.  Last read position: chr1:165,872,946
INFO	2026-06-03 19:57:27	SinglePassSamProgram	Processed    41,000,000 records.  Elapsed time: 00:00:59s.  Time for last 1,000,000:    1s.  Last read position: chr1:171,588,488
INFO	2026-06-03 19:57:29	SinglePassSamProgram	Processed    42,000,000 records.  Elapsed time: 00:01:01s.  Time for last 1,000,000:    1s.  Last read position: chr1:182,384,465
INFO	2026-06-03 19:57:30	SinglePassSamProgram	Processed    43,000,000 records.  Elapsed time: 00:01:02s.  Time for last 1,000,000:    1s.  Last read position: chr1:186,323,686
INFO	2026-06-03 19:57:32	SinglePassSamProgram	Processed    44,000,000 records.  Elapsed time: 00:01:04s.  Time for last 1,000,000:    1s.  Last read position: chr1:201,484,711
INFO	2026-06-03 19:57:34	SinglePassSamProgram	Processed    45,000,000 records.  Elapsed time: 00:01:06s.  Time for last 1,000,000:    1s.  Last read position: chr1:203,848,383
INFO	2026-06-03 19:57:35	SinglePassSamProgram	Processed    46,000,000 records.  Elapsed time: 00:01:07s.  Time for last 1,000,000:    1s.  Last read position: chr1:207,785,629
INFO	2026-06-03 19:57:37	SinglePassSamProgram	Processed    47,000,000 records.  Elapsed time: 00:01:09s.  Time for last 1,000,000:    1s.  Last read position: chr1:221,739,189
INFO	2026-06-03 19:57:39	SinglePassSamProgram	Processed    48,000,000 records.  Elapsed time: 00:01:11s.  Time for last 1,000,000:    1s.  Last read position: chr1:225,831,885
INFO	2026-06-03 19:57:40	SinglePassSamProgram	Processed    49,000,000 records.  Elapsed time: 00:01:12s.  Time for last 1,000,000:    1s.  Last read position: chr1:228,371,454
INFO	2026-06-03 19:57:42	SinglePassSamProgram	Processed    50,000,000 records.  Elapsed time: 00:01:14s.  Time for last 1,000,000:    1s.  Last read position: chr1:235,260,695
INFO	2026-06-03 19:57:44	SinglePassSamProgram	Processed    51,000,000 records.  Elapsed time: 00:01:16s.  Time for last 1,000,000:    1s.  Last read position: chr1:245,156,453
INFO	2026-06-03 19:57:45	SinglePassSamProgram	Processed    52,000,000 records.  Elapsed time: 00:01:17s.  Time for last 1,000,000:    1s.  Last read position: chr2:8,882,481
INFO	2026-06-03 19:57:47	SinglePassSamProgram	Processed    53,000,000 records.  Elapsed time: 00:01:19s.  Time for last 1,000,000:    1s.  Last read position: chr2:20,204,075
INFO	2026-06-03 19:57:48	SinglePassSamProgram	Processed    54,000,000 records.  Elapsed time: 00:01:20s.  Time for last 1,000,000:    1s.  Last read position: chr2:27,053,025
INFO	2026-06-03 19:57:50	SinglePassSamProgram	Processed    55,000,000 records.  Elapsed time: 00:01:22s.  Time for last 1,000,000:    1s.  Last read position: chr2:28,929,645
INFO	2026-06-03 19:57:52	SinglePassSamProgram	Processed    56,000,000 records.  Elapsed time: 00:01:24s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,264
INFO	2026-06-03 19:57:53	SinglePassSamProgram	Processed    57,000,000 records.  Elapsed time: 00:01:25s.  Time for last 1,000,000:    1s.  Last read position: chr2:32,916,406
INFO	2026-06-03 19:57:54	SinglePassSamProgram	Processed    58,000,000 records.  Elapsed time: 00:01:26s.  Time for last 1,000,000:    1s.  Last read position: chr2:39,035,242
INFO	2026-06-03 19:57:56	SinglePassSamProgram	Processed    59,000,000 records.  Elapsed time: 00:01:28s.  Time for last 1,000,000:    1s.  Last read position: chr2:46,941,584
INFO	2026-06-03 19:57:58	SinglePassSamProgram	Processed    60,000,000 records.  Elapsed time: 00:01:30s.  Time for last 1,000,000:    1s.  Last read position: chr2:55,328,301
INFO	2026-06-03 19:57:59	SinglePassSamProgram	Processed    61,000,000 records.  Elapsed time: 00:01:31s.  Time for last 1,000,000:    1s.  Last read position: chr2:68,244,936
INFO	2026-06-03 19:58:00	SinglePassSamProgram	Processed    62,000,000 records.  Elapsed time: 00:01:32s.  Time for last 1,000,000:    1s.  Last read position: chr2:73,112,464
INFO	2026-06-03 19:58:01	SinglePassSamProgram	Processed    63,000,000 records.  Elapsed time: 00:01:33s.  Time for last 1,000,000:    1s.  Last read position: chr2:75,647,209
INFO	2026-06-03 19:58:03	SinglePassSamProgram	Processed    64,000,000 records.  Elapsed time: 00:01:35s.  Time for last 1,000,000:    1s.  Last read position: chr2:87,795,696
INFO	2026-06-03 19:58:04	SinglePassSamProgram	Processed    65,000,000 records.  Elapsed time: 00:01:36s.  Time for last 1,000,000:    1s.  Last read position: chr2:96,612,299
INFO	2026-06-03 19:58:06	SinglePassSamProgram	Processed    66,000,000 records.  Elapsed time: 00:01:38s.  Time for last 1,000,000:    1s.  Last read position: chr2:102,164,863
INFO	2026-06-03 19:58:07	SinglePassSamProgram	Processed    67,000,000 records.  Elapsed time: 00:01:39s.  Time for last 1,000,000:    1s.  Last read position: chr2:109,835,978
INFO	2026-06-03 19:58:09	SinglePassSamProgram	Processed    68,000,000 records.  Elapsed time: 00:01:41s.  Time for last 1,000,000:    1s.  Last read position: chr2:113,890,235
INFO	2026-06-03 19:58:10	SinglePassSamProgram	Processed    69,000,000 records.  Elapsed time: 00:01:42s.  Time for last 1,000,000:    1s.  Last read position: chr2:134,946,125
INFO	2026-06-03 19:58:11	SinglePassSamProgram	Processed    70,000,000 records.  Elapsed time: 00:01:43s.  Time for last 1,000,000:    1s.  Last read position: chr2:159,382,713
INFO	2026-06-03 19:58:12	SinglePassSamProgram	Processed    71,000,000 records.  Elapsed time: 00:01:44s.  Time for last 1,000,000:    1s.  Last read position: chr2:174,562,007
INFO	2026-06-03 19:58:14	SinglePassSamProgram	Processed    72,000,000 records.  Elapsed time: 00:01:46s.  Time for last 1,000,000:    1s.  Last read position: chr2:186,590,343
INFO	2026-06-03 19:58:15	SinglePassSamProgram	Processed    73,000,000 records.  Elapsed time: 00:01:47s.  Time for last 1,000,000:    1s.  Last read position: chr2:188,994,298
INFO	2026-06-03 19:58:16	SinglePassSamProgram	Processed    74,000,000 records.  Elapsed time: 00:01:49s.  Time for last 1,000,000:    1s.  Last read position: chr2:188,999,550
INFO	2026-06-03 19:58:18	SinglePassSamProgram	Processed    75,000,000 records.  Elapsed time: 00:01:50s.  Time for last 1,000,000:    1s.  Last read position: chr2:189,008,035
INFO	2026-06-03 19:58:19	SinglePassSamProgram	Processed    76,000,000 records.  Elapsed time: 00:01:51s.  Time for last 1,000,000:    1s.  Last read position: chr2:189,060,737
INFO	2026-06-03 19:58:20	SinglePassSamProgram	Processed    77,000,000 records.  Elapsed time: 00:01:52s.  Time for last 1,000,000:    1s.  Last read position: chr2:197,401,868
INFO	2026-06-03 19:58:21	SinglePassSamProgram	Processed    78,000,000 records.  Elapsed time: 00:01:53s.  Time for last 1,000,000:    1s.  Last read position: chr2:205,765,557
INFO	2026-06-03 19:58:23	SinglePassSamProgram	Processed    79,000,000 records.  Elapsed time: 00:01:55s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,361,995
INFO	2026-06-03 19:58:24	SinglePassSamProgram	Processed    80,000,000 records.  Elapsed time: 00:01:56s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,370,378
INFO	2026-06-03 19:58:25	SinglePassSamProgram	Processed    81,000,000 records.  Elapsed time: 00:01:58s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,372,295
INFO	2026-06-03 19:58:27	SinglePassSamProgram	Processed    82,000,000 records.  Elapsed time: 00:01:59s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,375,654
INFO	2026-06-03 19:58:28	SinglePassSamProgram	Processed    83,000,000 records.  Elapsed time: 00:02:01s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,379,251
INFO	2026-06-03 19:58:30	SinglePassSamProgram	Processed    84,000,000 records.  Elapsed time: 00:02:02s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,384,882
INFO	2026-06-03 19:58:32	SinglePassSamProgram	Processed    85,000,000 records.  Elapsed time: 00:02:04s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,394,606
INFO	2026-06-03 19:58:33	SinglePassSamProgram	Processed    86,000,000 records.  Elapsed time: 00:02:05s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,404,617
INFO	2026-06-03 19:58:34	SinglePassSamProgram	Processed    87,000,000 records.  Elapsed time: 00:02:06s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,408,361
INFO	2026-06-03 19:58:36	SinglePassSamProgram	Processed    88,000,000 records.  Elapsed time: 00:02:08s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,419,241
INFO	2026-06-03 19:58:37	SinglePassSamProgram	Processed    89,000,000 records.  Elapsed time: 00:02:09s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,425,151
INFO	2026-06-03 19:58:38	SinglePassSamProgram	Processed    90,000,000 records.  Elapsed time: 00:02:10s.  Time for last 1,000,000:    1s.  Last read position: chr2:215,431,918
INFO	2026-06-03 19:58:40	SinglePassSamProgram	Processed    91,000,000 records.  Elapsed time: 00:02:12s.  Time for last 1,000,000:    1s.  Last read position: chr2:217,817,805
INFO	2026-06-03 19:58:41	SinglePassSamProgram	Processed    92,000,000 records.  Elapsed time: 00:02:13s.  Time for last 1,000,000:    1s.  Last read position: chr2:219,245,972
INFO	2026-06-03 19:58:43	SinglePassSamProgram	Processed    93,000,000 records.  Elapsed time: 00:02:15s.  Time for last 1,000,000:    1s.  Last read position: chr2:230,170,730
INFO	2026-06-03 19:58:44	SinglePassSamProgram	Processed    94,000,000 records.  Elapsed time: 00:02:16s.  Time for last 1,000,000:    1s.  Last read position: chr2:237,334,641
INFO	2026-06-03 19:58:45	SinglePassSamProgram	Processed    95,000,000 records.  Elapsed time: 00:02:18s.  Time for last 1,000,000:    1s.  Last read position: chr2:237,359,361
INFO	2026-06-03 19:58:47	SinglePassSamProgram	Processed    96,000,000 records.  Elapsed time: 00:02:19s.  Time for last 1,000,000:    1s.  Last read position: chr2:237,381,056
INFO	2026-06-03 19:58:49	SinglePassSamProgram	Processed    97,000,000 records.  Elapsed time: 00:02:21s.  Time for last 1,000,000:    1s.  Last read position: chr2:241,229,476
INFO	2026-06-03 19:58:50	SinglePassSamProgram	Processed    98,000,000 records.  Elapsed time: 00:02:22s.  Time for last 1,000,000:    1s.  Last read position: chr3:9,445,078
INFO	2026-06-03 19:58:52	SinglePassSamProgram	Processed    99,000,000 records.  Elapsed time: 00:02:24s.  Time for last 1,000,000:    1s.  Last read position: chr3:12,935,474
INFO	2026-06-03 19:58:53	SinglePassSamProgram	Processed   100,000,000 records.  Elapsed time: 00:02:25s.  Time for last 1,000,000:    1s.  Last read position: chr3:18,394,817
INFO	2026-06-03 19:58:54	SinglePassSamProgram	Processed   101,000,000 records.  Elapsed time: 00:02:26s.  Time for last 1,000,000:    1s.  Last read position: chr3:37,286,031
INFO	2026-06-03 19:58:56	SinglePassSamProgram	Processed   102,000,000 records.  Elapsed time: 00:02:28s.  Time for last 1,000,000:    1s.  Last read position: chr3:42,658,859
INFO	2026-06-03 19:58:57	SinglePassSamProgram	Processed   103,000,000 records.  Elapsed time: 00:02:29s.  Time for last 1,000,000:    1s.  Last read position: chr3:47,124,010
INFO	2026-06-03 19:58:59	SinglePassSamProgram	Processed   104,000,000 records.  Elapsed time: 00:02:31s.  Time for last 1,000,000:    1s.  Last read position: chr3:48,591,698
INFO	2026-06-03 19:59:00	SinglePassSamProgram	Processed   105,000,000 records.  Elapsed time: 00:02:32s.  Time for last 1,000,000:    1s.  Last read position: chr3:49,298,617
INFO	2026-06-03 19:59:01	SinglePassSamProgram	Processed   106,000,000 records.  Elapsed time: 00:02:34s.  Time for last 1,000,000:    1s.  Last read position: chr3:51,389,011
INFO	2026-06-03 19:59:03	SinglePassSamProgram	Processed   107,000,000 records.  Elapsed time: 00:02:35s.  Time for last 1,000,000:    1s.  Last read position: chr3:52,514,458
INFO	2026-06-03 19:59:05	SinglePassSamProgram	Processed   108,000,000 records.  Elapsed time: 00:02:37s.  Time for last 1,000,000:    1s.  Last read position: chr3:58,150,126
INFO	2026-06-03 19:59:06	SinglePassSamProgram	Processed   109,000,000 records.  Elapsed time: 00:02:38s.  Time for last 1,000,000:    1s.  Last read position: chr3:75,736,751
INFO	2026-06-03 19:59:07	SinglePassSamProgram	Processed   110,000,000 records.  Elapsed time: 00:02:40s.  Time for last 1,000,000:    1s.  Last read position: chr3:100,842,014
INFO	2026-06-03 19:59:09	SinglePassSamProgram	Processed   111,000,000 records.  Elapsed time: 00:02:41s.  Time for last 1,000,000:    1s.  Last read position: chr3:112,638,555
INFO	2026-06-03 19:59:11	SinglePassSamProgram	Processed   112,000,000 records.  Elapsed time: 00:02:43s.  Time for last 1,000,000:    1s.  Last read position: chr3:119,708,640
INFO	2026-06-03 19:59:12	SinglePassSamProgram	Processed   113,000,000 records.  Elapsed time: 00:02:44s.  Time for last 1,000,000:    1s.  Last read position: chr3:123,700,323
INFO	2026-06-03 19:59:14	SinglePassSamProgram	Processed   114,000,000 records.  Elapsed time: 00:02:46s.  Time for last 1,000,000:    1s.  Last read position: chr3:127,692,121
INFO	2026-06-03 19:59:15	SinglePassSamProgram	Processed   115,000,000 records.  Elapsed time: 00:02:48s.  Time for last 1,000,000:    1s.  Last read position: chr3:129,606,468
INFO	2026-06-03 19:59:17	SinglePassSamProgram	Processed   116,000,000 records.  Elapsed time: 00:02:49s.  Time for last 1,000,000:    1s.  Last read position: chr3:138,497,973
INFO	2026-06-03 19:59:18	SinglePassSamProgram	Processed   117,000,000 records.  Elapsed time: 00:02:51s.  Time for last 1,000,000:    1s.  Last read position: chr3:149,542,356
INFO	2026-06-03 19:59:20	SinglePassSamProgram	Processed   118,000,000 records.  Elapsed time: 00:02:52s.  Time for last 1,000,000:    1s.  Last read position: chr3:159,764,816
INFO	2026-06-03 19:59:21	SinglePassSamProgram	Processed   119,000,000 records.  Elapsed time: 00:02:53s.  Time for last 1,000,000:    1s.  Last read position: chr3:175,755,229
INFO	2026-06-03 19:59:23	SinglePassSamProgram	Processed   120,000,000 records.  Elapsed time: 00:02:55s.  Time for last 1,000,000:    1s.  Last read position: chr3:184,245,248
INFO	2026-06-03 19:59:24	SinglePassSamProgram	Processed   121,000,000 records.  Elapsed time: 00:02:57s.  Time for last 1,000,000:    1s.  Last read position: chr3:187,042,974
INFO	2026-06-03 19:59:26	SinglePassSamProgram	Processed   122,000,000 records.  Elapsed time: 00:02:58s.  Time for last 1,000,000:    1s.  Last read position: chr3:194,137,998
INFO	2026-06-03 19:59:27	SinglePassSamProgram	Processed   123,000,000 records.  Elapsed time: 00:02:59s.  Time for last 1,000,000:    1s.  Last read position: chr3:195,725,566
INFO	2026-06-03 19:59:29	SinglePassSamProgram	Processed   124,000,000 records.  Elapsed time: 00:03:01s.  Time for last 1,000,000:    1s.  Last read position: chr4:500,575
INFO	2026-06-03 19:59:31	SinglePassSamProgram	Processed   125,000,000 records.  Elapsed time: 00:03:03s.  Time for last 1,000,000:    1s.  Last read position: chr4:2,512,362
INFO	2026-06-03 19:59:32	SinglePassSamProgram	Processed   126,000,000 records.  Elapsed time: 00:03:04s.  Time for last 1,000,000:    1s.  Last read position: chr4:7,734,274
INFO	2026-06-03 19:59:34	SinglePassSamProgram	Processed   127,000,000 records.  Elapsed time: 00:03:06s.  Time for last 1,000,000:    1s.  Last read position: chr4:24,533,008
INFO	2026-06-03 19:59:35	SinglePassSamProgram	Processed   128,000,000 records.  Elapsed time: 00:03:07s.  Time for last 1,000,000:    1s.  Last read position: chr4:39,045,057
INFO	2026-06-03 19:59:37	SinglePassSamProgram	Processed   129,000,000 records.  Elapsed time: 00:03:09s.  Time for last 1,000,000:    1s.  Last read position: chr4:55,396,176
INFO	2026-06-03 19:59:39	SinglePassSamProgram	Processed   130,000,000 records.  Elapsed time: 00:03:11s.  Time for last 1,000,000:    1s.  Last read position: chr4:76,740,285
INFO	2026-06-03 19:59:40	SinglePassSamProgram	Processed   131,000,000 records.  Elapsed time: 00:03:12s.  Time for last 1,000,000:    1s.  Last read position: chr4:87,047,193
INFO	2026-06-03 19:59:41	SinglePassSamProgram	Processed   132,000,000 records.  Elapsed time: 00:03:13s.  Time for last 1,000,000:    1s.  Last read position: chr4:105,235,583
INFO	2026-06-03 19:59:43	SinglePassSamProgram	Processed   133,000,000 records.  Elapsed time: 00:03:15s.  Time for last 1,000,000:    1s.  Last read position: chr4:122,262,840
INFO	2026-06-03 19:59:45	SinglePassSamProgram	Processed   134,000,000 records.  Elapsed time: 00:03:17s.  Time for last 1,000,000:    1s.  Last read position: chr4:147,732,437
INFO	2026-06-03 19:59:46	SinglePassSamProgram	Processed   135,000,000 records.  Elapsed time: 00:03:18s.  Time for last 1,000,000:    1s.  Last read position: chr4:158,708,037
INFO	2026-06-03 19:59:48	SinglePassSamProgram	Processed   136,000,000 records.  Elapsed time: 00:03:20s.  Time for last 1,000,000:    1s.  Last read position: chr4:185,398,989
INFO	2026-06-03 19:59:50	SinglePassSamProgram	Processed   137,000,000 records.  Elapsed time: 00:03:22s.  Time for last 1,000,000:    1s.  Last read position: chr5:6,750,411
INFO	2026-06-03 19:59:51	SinglePassSamProgram	Processed   138,000,000 records.  Elapsed time: 00:03:23s.  Time for last 1,000,000:    1s.  Last read position: chr5:14,487,574
INFO	2026-06-03 19:59:53	SinglePassSamProgram	Processed   139,000,000 records.  Elapsed time: 00:03:25s.  Time for last 1,000,000:    1s.  Last read position: chr5:36,608,458
INFO	2026-06-03 19:59:56	SinglePassSamProgram	Processed   140,000,000 records.  Elapsed time: 00:03:28s.  Time for last 1,000,000:    2s.  Last read position: chr5:53,886,365
INFO	2026-06-03 19:59:58	SinglePassSamProgram	Processed   141,000,000 records.  Elapsed time: 00:03:30s.  Time for last 1,000,000:    1s.  Last read position: chr5:70,108,827
INFO	2026-06-03 19:59:59	SinglePassSamProgram	Processed   142,000,000 records.  Elapsed time: 00:03:31s.  Time for last 1,000,000:    1s.  Last read position: chr5:77,708,316
INFO	2026-06-03 20:00:00	SinglePassSamProgram	Processed   143,000,000 records.  Elapsed time: 00:03:33s.  Time for last 1,000,000:    1s.  Last read position: chr5:83,572,430
INFO	2026-06-03 20:00:02	SinglePassSamProgram	Processed   144,000,000 records.  Elapsed time: 00:03:34s.  Time for last 1,000,000:    1s.  Last read position: chr5:109,337,234
INFO	2026-06-03 20:00:03	SinglePassSamProgram	Processed   145,000,000 records.  Elapsed time: 00:03:35s.  Time for last 1,000,000:    1s.  Last read position: chr5:132,203,722
INFO	2026-06-03 20:00:05	SinglePassSamProgram	Processed   146,000,000 records.  Elapsed time: 00:03:37s.  Time for last 1,000,000:    1s.  Last read position: chr5:137,644,692
INFO	2026-06-03 20:00:07	SinglePassSamProgram	Processed   147,000,000 records.  Elapsed time: 00:03:39s.  Time for last 1,000,000:    1s.  Last read position: chr5:140,243,313
INFO	2026-06-03 20:00:08	SinglePassSamProgram	Processed   148,000,000 records.  Elapsed time: 00:03:40s.  Time for last 1,000,000:    1s.  Last read position: chr5:141,400,142
INFO	2026-06-03 20:00:09	SinglePassSamProgram	Processed   149,000,000 records.  Elapsed time: 00:03:42s.  Time for last 1,000,000:    1s.  Last read position: chr5:147,415,746
INFO	2026-06-03 20:00:11	SinglePassSamProgram	Processed   150,000,000 records.  Elapsed time: 00:03:43s.  Time for last 1,000,000:    1s.  Last read position: chr5:150,133,677
INFO	2026-06-03 20:00:13	SinglePassSamProgram	Processed   151,000,000 records.  Elapsed time: 00:03:45s.  Time for last 1,000,000:    1s.  Last read position: chr5:150,405,120
INFO	2026-06-03 20:00:14	SinglePassSamProgram	Processed   152,000,000 records.  Elapsed time: 00:03:46s.  Time for last 1,000,000:    1s.  Last read position: chr5:151,025,252
INFO	2026-06-03 20:00:16	SinglePassSamProgram	Processed   153,000,000 records.  Elapsed time: 00:03:48s.  Time for last 1,000,000:    1s.  Last read position: chr5:154,802,372
INFO	2026-06-03 20:00:17	SinglePassSamProgram	Processed   154,000,000 records.  Elapsed time: 00:03:50s.  Time for last 1,000,000:    1s.  Last read position: chr5:171,392,729
INFO	2026-06-03 20:00:19	SinglePassSamProgram	Processed   155,000,000 records.  Elapsed time: 00:03:51s.  Time for last 1,000,000:    1s.  Last read position: chr5:177,097,296
INFO	2026-06-03 20:00:20	SinglePassSamProgram	Processed   156,000,000 records.  Elapsed time: 00:03:52s.  Time for last 1,000,000:    1s.  Last read position: chr5:178,986,644
INFO	2026-06-03 20:00:22	SinglePassSamProgram	Processed   157,000,000 records.  Elapsed time: 00:03:54s.  Time for last 1,000,000:    1s.  Last read position: chr5:179,833,115
INFO	2026-06-03 20:00:23	SinglePassSamProgram	Processed   158,000,000 records.  Elapsed time: 00:03:55s.  Time for last 1,000,000:    1s.  Last read position: chr6:1,611,002
INFO	2026-06-03 20:00:25	SinglePassSamProgram	Processed   159,000,000 records.  Elapsed time: 00:03:57s.  Time for last 1,000,000:    1s.  Last read position: chr6:7,289,810
INFO	2026-06-03 20:00:26	SinglePassSamProgram	Processed   160,000,000 records.  Elapsed time: 00:03:58s.  Time for last 1,000,000:    1s.  Last read position: chr6:21,201,151
INFO	2026-06-03 20:00:28	SinglePassSamProgram	Processed   161,000,000 records.  Elapsed time: 00:04:00s.  Time for last 1,000,000:    1s.  Last read position: chr6:30,071,019
INFO	2026-06-03 20:00:29	SinglePassSamProgram	Processed   162,000,000 records.  Elapsed time: 00:04:01s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,269,145
INFO	2026-06-03 20:00:31	SinglePassSamProgram	Processed   163,000,000 records.  Elapsed time: 00:04:03s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,666,196
INFO	2026-06-03 20:00:32	SinglePassSamProgram	Processed   164,000,000 records.  Elapsed time: 00:04:04s.  Time for last 1,000,000:    1s.  Last read position: chr6:31,991,771
INFO	2026-06-03 20:00:34	SinglePassSamProgram	Processed   165,000,000 records.  Elapsed time: 00:04:06s.  Time for last 1,000,000:    1s.  Last read position: chr6:32,049,379
INFO	2026-06-03 20:00:35	SinglePassSamProgram	Processed   166,000,000 records.  Elapsed time: 00:04:07s.  Time for last 1,000,000:    1s.  Last read position: chr6:32,181,563
INFO	2026-06-03 20:00:36	SinglePassSamProgram	Processed   167,000,000 records.  Elapsed time: 00:04:08s.  Time for last 1,000,000:    1s.  Last read position: chr6:33,268,151
INFO	2026-06-03 20:00:38	SinglePassSamProgram	Processed   168,000,000 records.  Elapsed time: 00:04:10s.  Time for last 1,000,000:    1s.  Last read position: chr6:34,243,481
INFO	2026-06-03 20:00:39	SinglePassSamProgram	Processed   169,000,000 records.  Elapsed time: 00:04:11s.  Time for last 1,000,000:    1s.  Last read position: chr6:38,288,289
INFO	2026-06-03 20:00:41	SinglePassSamProgram	Processed   170,000,000 records.  Elapsed time: 00:04:13s.  Time for last 1,000,000:    1s.  Last read position: chr6:43,142,046
INFO	2026-06-03 20:00:42	SinglePassSamProgram	Processed   171,000,000 records.  Elapsed time: 00:04:14s.  Time for last 1,000,000:    1s.  Last read position: chr6:46,883,633
INFO	2026-06-03 20:00:43	SinglePassSamProgram	Processed   172,000,000 records.  Elapsed time: 00:04:15s.  Time for last 1,000,000:    1s.  Last read position: chr6:56,701,936
INFO	2026-06-03 20:00:44	SinglePassSamProgram	Processed   173,000,000 records.  Elapsed time: 00:04:16s.  Time for last 1,000,000:    1s.  Last read position: chr6:75,156,445
INFO	2026-06-03 20:00:46	SinglePassSamProgram	Processed   174,000,000 records.  Elapsed time: 00:04:18s.  Time for last 1,000,000:    1s.  Last read position: chr6:88,614,379
INFO	2026-06-03 20:00:47	SinglePassSamProgram	Processed   175,000,000 records.  Elapsed time: 00:04:19s.  Time for last 1,000,000:    1s.  Last read position: chr6:108,663,832
INFO	2026-06-03 20:00:49	SinglePassSamProgram	Processed   176,000,000 records.  Elapsed time: 00:04:21s.  Time for last 1,000,000:    1s.  Last read position: chr6:117,566,949
INFO	2026-06-03 20:00:50	SinglePassSamProgram	Processed   177,000,000 records.  Elapsed time: 00:04:22s.  Time for last 1,000,000:    1s.  Last read position: chr6:131,950,796
INFO	2026-06-03 20:00:52	SinglePassSamProgram	Processed   178,000,000 records.  Elapsed time: 00:04:24s.  Time for last 1,000,000:    1s.  Last read position: chr6:144,436,078
INFO	2026-06-03 20:00:53	SinglePassSamProgram	Processed   179,000,000 records.  Elapsed time: 00:04:25s.  Time for last 1,000,000:    1s.  Last read position: chr6:152,136,651
INFO	2026-06-03 20:00:54	SinglePassSamProgram	Processed   180,000,000 records.  Elapsed time: 00:04:26s.  Time for last 1,000,000:    1s.  Last read position: chr6:158,789,338
INFO	2026-06-03 20:00:56	SinglePassSamProgram	Processed   181,000,000 records.  Elapsed time: 00:04:28s.  Time for last 1,000,000:    1s.  Last read position: chr6:167,962,511
INFO	2026-06-03 20:00:57	SinglePassSamProgram	Processed   182,000,000 records.  Elapsed time: 00:04:29s.  Time for last 1,000,000:    1s.  Last read position: chr7:898,949
INFO	2026-06-03 20:00:59	SinglePassSamProgram	Processed   183,000,000 records.  Elapsed time: 00:04:31s.  Time for last 1,000,000:    1s.  Last read position: chr7:3,407,437
INFO	2026-06-03 20:01:00	SinglePassSamProgram	Processed   184,000,000 records.  Elapsed time: 00:04:32s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,394,499
INFO	2026-06-03 20:01:02	SinglePassSamProgram	Processed   185,000,000 records.  Elapsed time: 00:04:34s.  Time for last 1,000,000:    1s.  Last read position: chr7:5,603,337
INFO	2026-06-03 20:01:04	SinglePassSamProgram	Processed   186,000,000 records.  Elapsed time: 00:04:36s.  Time for last 1,000,000:    1s.  Last read position: chr7:17,339,175
INFO	2026-06-03 20:01:05	SinglePassSamProgram	Processed   187,000,000 records.  Elapsed time: 00:04:37s.  Time for last 1,000,000:    1s.  Last read position: chr7:28,804,466
INFO	2026-06-03 20:01:07	SinglePassSamProgram	Processed   188,000,000 records.  Elapsed time: 00:04:39s.  Time for last 1,000,000:    1s.  Last read position: chr7:43,787,931
INFO	2026-06-03 20:01:09	SinglePassSamProgram	Processed   189,000,000 records.  Elapsed time: 00:04:41s.  Time for last 1,000,000:    1s.  Last read position: chr7:44,207,477
INFO	2026-06-03 20:01:10	SinglePassSamProgram	Processed   190,000,000 records.  Elapsed time: 00:04:42s.  Time for last 1,000,000:    1s.  Last read position: chr7:55,492,314
INFO	2026-06-03 20:01:12	SinglePassSamProgram	Processed   191,000,000 records.  Elapsed time: 00:04:44s.  Time for last 1,000,000:    1s.  Last read position: chr7:70,790,744
INFO	2026-06-03 20:01:13	SinglePassSamProgram	Processed   192,000,000 records.  Elapsed time: 00:04:45s.  Time for last 1,000,000:    1s.  Last read position: chr7:74,037,711
INFO	2026-06-03 20:01:15	SinglePassSamProgram	Processed   193,000,000 records.  Elapsed time: 00:04:47s.  Time for last 1,000,000:    1s.  Last read position: chr7:75,422,169
INFO	2026-06-03 20:01:16	SinglePassSamProgram	Processed   194,000,000 records.  Elapsed time: 00:04:48s.  Time for last 1,000,000:    1s.  Last read position: chr7:77,005,677
INFO	2026-06-03 20:01:17	SinglePassSamProgram	Processed   195,000,000 records.  Elapsed time: 00:04:49s.  Time for last 1,000,000:    1s.  Last read position: chr7:92,062,275
INFO	2026-06-03 20:01:19	SinglePassSamProgram	Processed   196,000,000 records.  Elapsed time: 00:04:51s.  Time for last 1,000,000:    1s.  Last read position: chr7:94,404,880
INFO	2026-06-03 20:01:21	SinglePassSamProgram	Processed   197,000,000 records.  Elapsed time: 00:04:53s.  Time for last 1,000,000:    1s.  Last read position: chr7:94,412,098
INFO	2026-06-03 20:01:23	SinglePassSamProgram	Processed   198,000,000 records.  Elapsed time: 00:04:55s.  Time for last 1,000,000:    1s.  Last read position: chr7:94,420,624
INFO	2026-06-03 20:01:24	SinglePassSamProgram	Processed   199,000,000 records.  Elapsed time: 00:04:57s.  Time for last 1,000,000:    1s.  Last read position: chr7:94,429,302
INFO	2026-06-03 20:01:26	SinglePassSamProgram	Processed   200,000,000 records.  Elapsed time: 00:04:58s.  Time for last 1,000,000:    1s.  Last read position: chr7:99,572,801
INFO	2026-06-03 20:01:28	SinglePassSamProgram	Processed   201,000,000 records.  Elapsed time: 00:05:00s.  Time for last 1,000,000:    1s.  Last read position: chr7:100,605,114
INFO	2026-06-03 20:01:29	SinglePassSamProgram	Processed   202,000,000 records.  Elapsed time: 00:05:01s.  Time for last 1,000,000:    1s.  Last read position: chr7:102,353,150
INFO	2026-06-03 20:01:30	SinglePassSamProgram	Processed   203,000,000 records.  Elapsed time: 00:05:03s.  Time for last 1,000,000:    1s.  Last read position: chr7:105,063,458
INFO	2026-06-03 20:01:32	SinglePassSamProgram	Processed   204,000,000 records.  Elapsed time: 00:05:04s.  Time for last 1,000,000:    1s.  Last read position: chr7:116,906,263
INFO	2026-06-03 20:01:34	SinglePassSamProgram	Processed   205,000,000 records.  Elapsed time: 00:05:06s.  Time for last 1,000,000:    1s.  Last read position: chr7:128,840,870
INFO	2026-06-03 20:01:35	SinglePassSamProgram	Processed   206,000,000 records.  Elapsed time: 00:05:07s.  Time for last 1,000,000:    1s.  Last read position: chr7:137,882,411
INFO	2026-06-03 20:01:37	SinglePassSamProgram	Processed   207,000,000 records.  Elapsed time: 00:05:09s.  Time for last 1,000,000:    1s.  Last read position: chr7:141,071,476
INFO	2026-06-03 20:01:39	SinglePassSamProgram	Processed   208,000,000 records.  Elapsed time: 00:05:11s.  Time for last 1,000,000:    1s.  Last read position: chr7:144,365,554
INFO	2026-06-03 20:01:40	SinglePassSamProgram	Processed   209,000,000 records.  Elapsed time: 00:05:12s.  Time for last 1,000,000:    1s.  Last read position: chr7:151,082,275
INFO	2026-06-03 20:01:42	SinglePassSamProgram	Processed   210,000,000 records.  Elapsed time: 00:05:14s.  Time for last 1,000,000:    1s.  Last read position: chr7:152,179,929
INFO	2026-06-03 20:01:43	SinglePassSamProgram	Processed   211,000,000 records.  Elapsed time: 00:05:15s.  Time for last 1,000,000:    1s.  Last read position: chr7:155,741,836
INFO	2026-06-03 20:01:44	SinglePassSamProgram	Processed   212,000,000 records.  Elapsed time: 00:05:16s.  Time for last 1,000,000:    1s.  Last read position: chr8:13,100,701
INFO	2026-06-03 20:01:46	SinglePassSamProgram	Processed   213,000,000 records.  Elapsed time: 00:05:18s.  Time for last 1,000,000:    1s.  Last read position: chr8:22,617,384
INFO	2026-06-03 20:01:48	SinglePassSamProgram	Processed   214,000,000 records.  Elapsed time: 00:05:20s.  Time for last 1,000,000:    1s.  Last read position: chr8:30,700,087
INFO	2026-06-03 20:01:49	SinglePassSamProgram	Processed   215,000,000 records.  Elapsed time: 00:05:21s.  Time for last 1,000,000:    1s.  Last read position: chr8:38,426,180
INFO	2026-06-03 20:01:51	SinglePassSamProgram	Processed   216,000,000 records.  Elapsed time: 00:05:23s.  Time for last 1,000,000:    1s.  Last read position: chr8:47,778,472
INFO	2026-06-03 20:01:52	SinglePassSamProgram	Processed   217,000,000 records.  Elapsed time: 00:05:24s.  Time for last 1,000,000:    1s.  Last read position: chr8:67,163,783
INFO	2026-06-03 20:01:54	SinglePassSamProgram	Processed   218,000,000 records.  Elapsed time: 00:05:26s.  Time for last 1,000,000:    1s.  Last read position: chr8:81,521,977
INFO	2026-06-03 20:01:55	SinglePassSamProgram	Processed   219,000,000 records.  Elapsed time: 00:05:28s.  Time for last 1,000,000:    1s.  Last read position: chr8:100,703,289
INFO	2026-06-03 20:01:57	SinglePassSamProgram	Processed   220,000,000 records.  Elapsed time: 00:05:29s.  Time for last 1,000,000:    1s.  Last read position: chr8:108,202,982
INFO	2026-06-03 20:01:58	SinglePassSamProgram	Processed   221,000,000 records.  Elapsed time: 00:05:30s.  Time for last 1,000,000:    1s.  Last read position: chr8:124,314,004
INFO	2026-06-03 20:02:00	SinglePassSamProgram	Processed   222,000,000 records.  Elapsed time: 00:05:32s.  Time for last 1,000,000:    1s.  Last read position: chr8:141,427,016
INFO	2026-06-03 20:02:01	SinglePassSamProgram	Processed   223,000,000 records.  Elapsed time: 00:05:33s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,858,216
INFO	2026-06-03 20:02:03	SinglePassSamProgram	Processed   224,000,000 records.  Elapsed time: 00:05:35s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,860,035
INFO	2026-06-03 20:02:04	SinglePassSamProgram	Processed   225,000,000 records.  Elapsed time: 00:05:36s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,861,858
INFO	2026-06-03 20:02:06	SinglePassSamProgram	Processed   226,000,000 records.  Elapsed time: 00:05:38s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,863,639
INFO	2026-06-03 20:02:07	SinglePassSamProgram	Processed   227,000,000 records.  Elapsed time: 00:05:39s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,865,562
INFO	2026-06-03 20:02:09	SinglePassSamProgram	Processed   228,000,000 records.  Elapsed time: 00:05:41s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,916,211
INFO	2026-06-03 20:02:10	SinglePassSamProgram	Processed   229,000,000 records.  Elapsed time: 00:05:42s.  Time for last 1,000,000:    1s.  Last read position: chr8:143,929,168
INFO	2026-06-03 20:02:12	SinglePassSamProgram	Processed   230,000,000 records.  Elapsed time: 00:05:44s.  Time for last 1,000,000:    1s.  Last read position: chr8:144,396,382
INFO	2026-06-03 20:02:14	SinglePassSamProgram	Processed   231,000,000 records.  Elapsed time: 00:05:46s.  Time for last 1,000,000:    1s.  Last read position: chr9:2,876,102
INFO	2026-06-03 20:02:15	SinglePassSamProgram	Processed   232,000,000 records.  Elapsed time: 00:05:47s.  Time for last 1,000,000:    1s.  Last read position: chr9:14,307,247
INFO	2026-06-03 20:02:17	SinglePassSamProgram	Processed   233,000,000 records.  Elapsed time: 00:05:49s.  Time for last 1,000,000:    1s.  Last read position: chr9:33,384,852
INFO	2026-06-03 20:02:19	SinglePassSamProgram	Processed   234,000,000 records.  Elapsed time: 00:05:51s.  Time for last 1,000,000:    1s.  Last read position: chr9:35,685,656
INFO	2026-06-03 20:02:20	SinglePassSamProgram	Processed   235,000,000 records.  Elapsed time: 00:05:52s.  Time for last 1,000,000:    1s.  Last read position: chr9:40,584,350
INFO	2026-06-03 20:02:22	SinglePassSamProgram	Processed   236,000,000 records.  Elapsed time: 00:05:54s.  Time for last 1,000,000:    1s.  Last read position: chr9:83,970,180
INFO	2026-06-03 20:02:23	SinglePassSamProgram	Processed   237,000,000 records.  Elapsed time: 00:05:56s.  Time for last 1,000,000:    1s.  Last read position: chr9:92,719,380
INFO	2026-06-03 20:02:25	SinglePassSamProgram	Processed   238,000,000 records.  Elapsed time: 00:05:57s.  Time for last 1,000,000:    1s.  Last read position: chr9:100,242,562
INFO	2026-06-03 20:02:27	SinglePassSamProgram	Processed   239,000,000 records.  Elapsed time: 00:05:59s.  Time for last 1,000,000:    1s.  Last read position: chr9:112,275,970
INFO	2026-06-03 20:02:28	SinglePassSamProgram	Processed   240,000,000 records.  Elapsed time: 00:06:01s.  Time for last 1,000,000:    1s.  Last read position: chr9:115,081,791
INFO	2026-06-03 20:02:30	SinglePassSamProgram	Processed   241,000,000 records.  Elapsed time: 00:06:02s.  Time for last 1,000,000:    1s.  Last read position: chr9:122,258,147
INFO	2026-06-03 20:02:32	SinglePassSamProgram	Processed   242,000,000 records.  Elapsed time: 00:06:04s.  Time for last 1,000,000:    1s.  Last read position: chr9:127,824,944
INFO	2026-06-03 20:02:33	SinglePassSamProgram	Processed   243,000,000 records.  Elapsed time: 00:06:06s.  Time for last 1,000,000:    1s.  Last read position: chr9:128,605,331
INFO	2026-06-03 20:02:35	SinglePassSamProgram	Processed   244,000,000 records.  Elapsed time: 00:06:08s.  Time for last 1,000,000:    1s.  Last read position: chr9:130,854,965
INFO	2026-06-03 20:02:37	SinglePassSamProgram	Processed   245,000,000 records.  Elapsed time: 00:06:09s.  Time for last 1,000,000:    1s.  Last read position: chr9:132,401,977
INFO	2026-06-03 20:02:39	SinglePassSamProgram	Processed   246,000,000 records.  Elapsed time: 00:06:11s.  Time for last 1,000,000:    1s.  Last read position: chr9:134,738,473
INFO	2026-06-03 20:02:41	SinglePassSamProgram	Processed   247,000,000 records.  Elapsed time: 00:06:13s.  Time for last 1,000,000:    1s.  Last read position: chr9:134,820,151
INFO	2026-06-03 20:02:42	SinglePassSamProgram	Processed   248,000,000 records.  Elapsed time: 00:06:14s.  Time for last 1,000,000:    1s.  Last read position: chr9:136,513,417
INFO	2026-06-03 20:02:44	SinglePassSamProgram	Processed   249,000,000 records.  Elapsed time: 00:06:16s.  Time for last 1,000,000:    1s.  Last read position: chr9:137,218,214
INFO	2026-06-03 20:02:46	SinglePassSamProgram	Processed   250,000,000 records.  Elapsed time: 00:06:18s.  Time for last 1,000,000:    1s.  Last read position: chr10:3,782,163
INFO	2026-06-03 20:02:47	SinglePassSamProgram	Processed   251,000,000 records.  Elapsed time: 00:06:19s.  Time for last 1,000,000:    1s.  Last read position: chr10:17,229,380
INFO	2026-06-03 20:02:49	SinglePassSamProgram	Processed   252,000,000 records.  Elapsed time: 00:06:21s.  Time for last 1,000,000:    1s.  Last read position: chr10:24,546,030
INFO	2026-06-03 20:02:50	SinglePassSamProgram	Processed   253,000,000 records.  Elapsed time: 00:06:23s.  Time for last 1,000,000:    1s.  Last read position: chr10:32,022,181
INFO	2026-06-03 20:02:52	SinglePassSamProgram	Processed   254,000,000 records.  Elapsed time: 00:06:24s.  Time for last 1,000,000:    1s.  Last read position: chr10:45,443,467
INFO	2026-06-03 20:02:53	SinglePassSamProgram	Processed   255,000,000 records.  Elapsed time: 00:06:25s.  Time for last 1,000,000:    1s.  Last read position: chr10:50,686,042
INFO	2026-06-03 20:02:55	SinglePassSamProgram	Processed   256,000,000 records.  Elapsed time: 00:06:27s.  Time for last 1,000,000:    1s.  Last read position: chr10:68,956,208
INFO	2026-06-03 20:02:56	SinglePassSamProgram	Processed   257,000,000 records.  Elapsed time: 00:06:29s.  Time for last 1,000,000:    1s.  Last read position: chr10:73,732,597
INFO	2026-06-03 20:02:58	SinglePassSamProgram	Processed   258,000,000 records.  Elapsed time: 00:06:30s.  Time for last 1,000,000:    1s.  Last read position: chr10:79,300,879
INFO	2026-06-03 20:02:59	SinglePassSamProgram	Processed   259,000,000 records.  Elapsed time: 00:06:31s.  Time for last 1,000,000:    1s.  Last read position: chr10:88,938,012
INFO	2026-06-03 20:03:01	SinglePassSamProgram	Processed   260,000,000 records.  Elapsed time: 00:06:33s.  Time for last 1,000,000:    1s.  Last read position: chr10:96,954,905
INFO	2026-06-03 20:03:03	SinglePassSamProgram	Processed   261,000,000 records.  Elapsed time: 00:06:35s.  Time for last 1,000,000:    1s.  Last read position: chr10:102,139,347
INFO	2026-06-03 20:03:04	SinglePassSamProgram	Processed   262,000,000 records.  Elapsed time: 00:06:36s.  Time for last 1,000,000:    1s.  Last read position: chr10:110,208,052
INFO	2026-06-03 20:03:06	SinglePassSamProgram	Processed   263,000,000 records.  Elapsed time: 00:06:38s.  Time for last 1,000,000:    1s.  Last read position: chr10:119,527,314
INFO	2026-06-03 20:03:08	SinglePassSamProgram	Processed   264,000,000 records.  Elapsed time: 00:06:40s.  Time for last 1,000,000:    1s.  Last read position: chr10:126,094,041
INFO	2026-06-03 20:03:09	SinglePassSamProgram	Processed   265,000,000 records.  Elapsed time: 00:06:42s.  Time for last 1,000,000:    1s.  Last read position: chr11:293,876
INFO	2026-06-03 20:03:11	SinglePassSamProgram	Processed   266,000,000 records.  Elapsed time: 00:06:43s.  Time for last 1,000,000:    1s.  Last read position: chr11:613,447
INFO	2026-06-03 20:03:13	SinglePassSamProgram	Processed   267,000,000 records.  Elapsed time: 00:06:45s.  Time for last 1,000,000:    1s.  Last read position: chr11:1,277,013
INFO	2026-06-03 20:03:14	SinglePassSamProgram	Processed   268,000,000 records.  Elapsed time: 00:06:47s.  Time for last 1,000,000:    1s.  Last read position: chr11:4,123,222
INFO	2026-06-03 20:03:16	SinglePassSamProgram	Processed   269,000,000 records.  Elapsed time: 00:06:48s.  Time for last 1,000,000:    1s.  Last read position: chr11:8,919,557
INFO	2026-06-03 20:03:17	SinglePassSamProgram	Processed   270,000,000 records.  Elapsed time: 00:06:49s.  Time for last 1,000,000:    1s.  Last read position: chr11:15,372,056
INFO	2026-06-03 20:03:19	SinglePassSamProgram	Processed   271,000,000 records.  Elapsed time: 00:06:51s.  Time for last 1,000,000:    1s.  Last read position: chr11:34,089,420
INFO	2026-06-03 20:03:20	SinglePassSamProgram	Processed   272,000,000 records.  Elapsed time: 00:06:52s.  Time for last 1,000,000:    1s.  Last read position: chr11:46,320,298
INFO	2026-06-03 20:03:22	SinglePassSamProgram	Processed   273,000,000 records.  Elapsed time: 00:06:54s.  Time for last 1,000,000:    1s.  Last read position: chr11:57,308,674
INFO	2026-06-03 20:03:23	SinglePassSamProgram	Processed   274,000,000 records.  Elapsed time: 00:06:55s.  Time for last 1,000,000:    1s.  Last read position: chr11:58,834,346
INFO	2026-06-03 20:03:24	SinglePassSamProgram	Processed   275,000,000 records.  Elapsed time: 00:06:56s.  Time for last 1,000,000:    1s.  Last read position: chr11:61,906,601
INFO	2026-06-03 20:03:26	SinglePassSamProgram	Processed   276,000,000 records.  Elapsed time: 00:06:58s.  Time for last 1,000,000:    1s.  Last read position: chr11:62,525,373
INFO	2026-06-03 20:03:27	SinglePassSamProgram	Processed   277,000,000 records.  Elapsed time: 00:06:59s.  Time for last 1,000,000:    1s.  Last read position: chr11:62,578,868
INFO	2026-06-03 20:03:29	SinglePassSamProgram	Processed   278,000,000 records.  Elapsed time: 00:07:01s.  Time for last 1,000,000:    1s.  Last read position: chr11:64,230,841
INFO	2026-06-03 20:03:30	SinglePassSamProgram	Processed   279,000,000 records.  Elapsed time: 00:07:03s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,120,792
INFO	2026-06-03 20:03:32	SinglePassSamProgram	Processed   280,000,000 records.  Elapsed time: 00:07:04s.  Time for last 1,000,000:    1s.  Last read position: chr11:65,598,573
INFO	2026-06-03 20:03:34	SinglePassSamProgram	Processed   281,000,000 records.  Elapsed time: 00:07:06s.  Time for last 1,000,000:    1s.  Last read position: chr11:66,265,166
INFO	2026-06-03 20:03:35	SinglePassSamProgram	Processed   282,000,000 records.  Elapsed time: 00:07:07s.  Time for last 1,000,000:    1s.  Last read position: chr11:67,279,649
INFO	2026-06-03 20:03:36	SinglePassSamProgram	Processed   283,000,000 records.  Elapsed time: 00:07:08s.  Time for last 1,000,000:    1s.  Last read position: chr11:68,892,316
INFO	2026-06-03 20:03:38	SinglePassSamProgram	Processed   284,000,000 records.  Elapsed time: 00:07:10s.  Time for last 1,000,000:    1s.  Last read position: chr11:72,014,439
INFO	2026-06-03 20:03:40	SinglePassSamProgram	Processed   285,000,000 records.  Elapsed time: 00:07:12s.  Time for last 1,000,000:    1s.  Last read position: chr11:74,133,522
INFO	2026-06-03 20:03:41	SinglePassSamProgram	Processed   286,000,000 records.  Elapsed time: 00:07:13s.  Time for last 1,000,000:    1s.  Last read position: chr11:78,854,274
INFO	2026-06-03 20:03:43	SinglePassSamProgram	Processed   287,000,000 records.  Elapsed time: 00:07:15s.  Time for last 1,000,000:    1s.  Last read position: chr11:101,961,864
INFO	2026-06-03 20:03:44	SinglePassSamProgram	Processed   288,000,000 records.  Elapsed time: 00:07:17s.  Time for last 1,000,000:    1s.  Last read position: chr11:114,062,530
INFO	2026-06-03 20:03:46	SinglePassSamProgram	Processed   289,000,000 records.  Elapsed time: 00:07:18s.  Time for last 1,000,000:    1s.  Last read position: chr11:118,532,911
INFO	2026-06-03 20:03:48	SinglePassSamProgram	Processed   290,000,000 records.  Elapsed time: 00:07:20s.  Time for last 1,000,000:    1s.  Last read position: chr11:119,113,655
INFO	2026-06-03 20:03:49	SinglePassSamProgram	Processed   291,000,000 records.  Elapsed time: 00:07:21s.  Time for last 1,000,000:    1s.  Last read position: chr11:126,265,348
INFO	2026-06-03 20:03:51	SinglePassSamProgram	Processed   292,000,000 records.  Elapsed time: 00:07:23s.  Time for last 1,000,000:    1s.  Last read position: chr12:865,111
INFO	2026-06-03 20:03:53	SinglePassSamProgram	Processed   293,000,000 records.  Elapsed time: 00:07:25s.  Time for last 1,000,000:    1s.  Last read position: chr12:6,330,680
INFO	2026-06-03 20:03:54	SinglePassSamProgram	Processed   294,000,000 records.  Elapsed time: 00:07:26s.  Time for last 1,000,000:    1s.  Last read position: chr12:6,941,385
INFO	2026-06-03 20:03:56	SinglePassSamProgram	Processed   295,000,000 records.  Elapsed time: 00:07:28s.  Time for last 1,000,000:    1s.  Last read position: chr12:9,069,791
INFO	2026-06-03 20:03:58	SinglePassSamProgram	Processed   296,000,000 records.  Elapsed time: 00:07:30s.  Time for last 1,000,000:    1s.  Last read position: chr12:14,944,776
INFO	2026-06-03 20:03:59	SinglePassSamProgram	Processed   297,000,000 records.  Elapsed time: 00:07:31s.  Time for last 1,000,000:    1s.  Last read position: chr12:40,479,529
INFO	2026-06-03 20:04:01	SinglePassSamProgram	Processed   298,000,000 records.  Elapsed time: 00:07:33s.  Time for last 1,000,000:    1s.  Last read position: chr12:49,026,239
INFO	2026-06-03 20:04:02	SinglePassSamProgram	Processed   299,000,000 records.  Elapsed time: 00:07:34s.  Time for last 1,000,000:    1s.  Last read position: chr12:49,635,364
INFO	2026-06-03 20:04:04	SinglePassSamProgram	Processed   300,000,000 records.  Elapsed time: 00:07:36s.  Time for last 1,000,000:    1s.  Last read position: chr12:52,238,678
INFO	2026-06-03 20:04:06	SinglePassSamProgram	Processed   301,000,000 records.  Elapsed time: 00:07:38s.  Time for last 1,000,000:    1s.  Last read position: chr12:53,441,759
INFO	2026-06-03 20:04:07	SinglePassSamProgram	Processed   302,000,000 records.  Elapsed time: 00:07:39s.  Time for last 1,000,000:    1s.  Last read position: chr12:54,858,243
INFO	2026-06-03 20:04:09	SinglePassSamProgram	Processed   303,000,000 records.  Elapsed time: 00:07:41s.  Time for last 1,000,000:    1s.  Last read position: chr12:56,326,811
INFO	2026-06-03 20:04:10	SinglePassSamProgram	Processed   304,000,000 records.  Elapsed time: 00:07:43s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,099,778
INFO	2026-06-03 20:04:12	SinglePassSamProgram	Processed   305,000,000 records.  Elapsed time: 00:07:44s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,183,474
INFO	2026-06-03 20:04:14	SinglePassSamProgram	Processed   306,000,000 records.  Elapsed time: 00:07:46s.  Time for last 1,000,000:    1s.  Last read position: chr12:57,500,498
INFO	2026-06-03 20:04:16	SinglePassSamProgram	Processed   307,000,000 records.  Elapsed time: 00:07:48s.  Time for last 1,000,000:    1s.  Last read position: chr12:66,169,855
INFO	2026-06-03 20:04:17	SinglePassSamProgram	Processed   308,000,000 records.  Elapsed time: 00:07:49s.  Time for last 1,000,000:    1s.  Last read position: chr12:89,351,638
INFO	2026-06-03 20:04:19	SinglePassSamProgram	Processed   309,000,000 records.  Elapsed time: 00:07:51s.  Time for last 1,000,000:    1s.  Last read position: chr12:98,601,398
INFO	2026-06-03 20:04:20	SinglePassSamProgram	Processed   310,000,000 records.  Elapsed time: 00:07:52s.  Time for last 1,000,000:    1s.  Last read position: chr12:108,292,109
INFO	2026-06-03 20:04:22	SinglePassSamProgram	Processed   311,000,000 records.  Elapsed time: 00:07:54s.  Time for last 1,000,000:    1s.  Last read position: chr12:111,790,443
INFO	2026-06-03 20:04:23	SinglePassSamProgram	Processed   312,000,000 records.  Elapsed time: 00:07:55s.  Time for last 1,000,000:    1s.  Last read position: chr12:118,144,732
INFO	2026-06-03 20:04:25	SinglePassSamProgram	Processed   313,000,000 records.  Elapsed time: 00:07:57s.  Time for last 1,000,000:    1s.  Last read position: chr12:121,822,780
INFO	2026-06-03 20:04:26	SinglePassSamProgram	Processed   314,000,000 records.  Elapsed time: 00:07:58s.  Time for last 1,000,000:    1s.  Last read position: chr12:124,334,467
INFO	2026-06-03 20:04:28	SinglePassSamProgram	Processed   315,000,000 records.  Elapsed time: 00:08:00s.  Time for last 1,000,000:    1s.  Last read position: chr12:131,916,016
INFO	2026-06-03 20:04:29	SinglePassSamProgram	Processed   316,000,000 records.  Elapsed time: 00:08:01s.  Time for last 1,000,000:    1s.  Last read position: chr13:19,407,826
INFO	2026-06-03 20:04:31	SinglePassSamProgram	Processed   317,000,000 records.  Elapsed time: 00:08:03s.  Time for last 1,000,000:    1s.  Last read position: chr13:26,676,600
INFO	2026-06-03 20:04:32	SinglePassSamProgram	Processed   318,000,000 records.  Elapsed time: 00:08:04s.  Time for last 1,000,000:    1s.  Last read position: chr13:37,569,793
INFO	2026-06-03 20:04:34	SinglePassSamProgram	Processed   319,000,000 records.  Elapsed time: 00:08:06s.  Time for last 1,000,000:    1s.  Last read position: chr13:42,303,544
INFO	2026-06-03 20:04:35	SinglePassSamProgram	Processed   320,000,000 records.  Elapsed time: 00:08:08s.  Time for last 1,000,000:    1s.  Last read position: chr13:50,015,603
INFO	2026-06-03 20:04:37	SinglePassSamProgram	Processed   321,000,000 records.  Elapsed time: 00:08:09s.  Time for last 1,000,000:    1s.  Last read position: chr13:94,352,521
INFO	2026-06-03 20:04:39	SinglePassSamProgram	Processed   322,000,000 records.  Elapsed time: 00:08:11s.  Time for last 1,000,000:    1s.  Last read position: chr13:109,782,288
INFO	2026-06-03 20:04:41	SinglePassSamProgram	Processed   323,000,000 records.  Elapsed time: 00:08:13s.  Time for last 1,000,000:    1s.  Last read position: chr13:113,254,700
INFO	2026-06-03 20:04:42	SinglePassSamProgram	Processed   324,000,000 records.  Elapsed time: 00:08:14s.  Time for last 1,000,000:    1s.  Last read position: chr14:21,233,976
INFO	2026-06-03 20:04:44	SinglePassSamProgram	Processed   325,000,000 records.  Elapsed time: 00:08:16s.  Time for last 1,000,000:    1s.  Last read position: chr14:23,323,014
INFO	2026-06-03 20:04:45	SinglePassSamProgram	Processed   326,000,000 records.  Elapsed time: 00:08:17s.  Time for last 1,000,000:    1s.  Last read position: chr14:24,440,120
INFO	2026-06-03 20:04:47	SinglePassSamProgram	Processed   327,000,000 records.  Elapsed time: 00:08:19s.  Time for last 1,000,000:    1s.  Last read position: chr14:49,583,640
INFO	2026-06-03 20:04:48	SinglePassSamProgram	Processed   328,000,000 records.  Elapsed time: 00:08:20s.  Time for last 1,000,000:    1s.  Last read position: chr14:55,138,337
INFO	2026-06-03 20:04:49	SinglePassSamProgram	Processed   329,000,000 records.  Elapsed time: 00:08:21s.  Time for last 1,000,000:    1s.  Last read position: chr14:64,411,130
INFO	2026-06-03 20:04:51	SinglePassSamProgram	Processed   330,000,000 records.  Elapsed time: 00:08:23s.  Time for last 1,000,000:    1s.  Last read position: chr14:69,711,627
INFO	2026-06-03 20:04:52	SinglePassSamProgram	Processed   331,000,000 records.  Elapsed time: 00:08:24s.  Time for last 1,000,000:    1s.  Last read position: chr14:74,763,836
INFO	2026-06-03 20:04:54	SinglePassSamProgram	Processed   332,000,000 records.  Elapsed time: 00:08:26s.  Time for last 1,000,000:    1s.  Last read position: chr14:77,518,104
INFO	2026-06-03 20:04:55	SinglePassSamProgram	Processed   333,000,000 records.  Elapsed time: 00:08:27s.  Time for last 1,000,000:    1s.  Last read position: chr14:92,714,395
INFO	2026-06-03 20:04:56	SinglePassSamProgram	Processed   334,000,000 records.  Elapsed time: 00:08:28s.  Time for last 1,000,000:    1s.  Last read position: chr14:100,306,280
INFO	2026-06-03 20:04:58	SinglePassSamProgram	Processed   335,000,000 records.  Elapsed time: 00:08:30s.  Time for last 1,000,000:    1s.  Last read position: chr14:102,986,567
INFO	2026-06-03 20:05:00	SinglePassSamProgram	Processed   336,000,000 records.  Elapsed time: 00:08:32s.  Time for last 1,000,000:    1s.  Last read position: chr14:104,887,687
INFO	2026-06-03 20:05:01	SinglePassSamProgram	Processed   337,000,000 records.  Elapsed time: 00:08:33s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,145,859
INFO	2026-06-03 20:05:02	SinglePassSamProgram	Processed   338,000,000 records.  Elapsed time: 00:08:34s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,741,626
INFO	2026-06-03 20:05:04	SinglePassSamProgram	Processed   339,000,000 records.  Elapsed time: 00:08:36s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,854,426
INFO	2026-06-03 20:05:06	SinglePassSamProgram	Processed   340,000,000 records.  Elapsed time: 00:08:38s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,854,701
INFO	2026-06-03 20:05:07	SinglePassSamProgram	Processed   341,000,000 records.  Elapsed time: 00:08:40s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,855,156
INFO	2026-06-03 20:05:09	SinglePassSamProgram	Processed   342,000,000 records.  Elapsed time: 00:08:41s.  Time for last 1,000,000:    1s.  Last read position: chr14:105,855,752
INFO	2026-06-03 20:05:10	SinglePassSamProgram	Processed   343,000,000 records.  Elapsed time: 00:08:42s.  Time for last 1,000,000:    1s.  Last read position: chr15:22,587,633
INFO	2026-06-03 20:05:11	SinglePassSamProgram	Processed   344,000,000 records.  Elapsed time: 00:08:44s.  Time for last 1,000,000:    1s.  Last read position: chr15:32,528,538
INFO	2026-06-03 20:05:13	SinglePassSamProgram	Processed   345,000,000 records.  Elapsed time: 00:08:45s.  Time for last 1,000,000:    1s.  Last read position: chr15:40,337,755
INFO	2026-06-03 20:05:14	SinglePassSamProgram	Processed   346,000,000 records.  Elapsed time: 00:08:46s.  Time for last 1,000,000:    1s.  Last read position: chr15:42,736,576
INFO	2026-06-03 20:05:16	SinglePassSamProgram	Processed   347,000,000 records.  Elapsed time: 00:08:48s.  Time for last 1,000,000:    1s.  Last read position: chr15:45,511,150
INFO	2026-06-03 20:05:17	SinglePassSamProgram	Processed   348,000,000 records.  Elapsed time: 00:08:49s.  Time for last 1,000,000:    1s.  Last read position: chr15:52,528,768
INFO	2026-06-03 20:05:18	SinglePassSamProgram	Processed   349,000,000 records.  Elapsed time: 00:08:50s.  Time for last 1,000,000:    1s.  Last read position: chr15:62,033,451
INFO	2026-06-03 20:05:20	SinglePassSamProgram	Processed   350,000,000 records.  Elapsed time: 00:08:52s.  Time for last 1,000,000:    1s.  Last read position: chr15:65,197,233
INFO	2026-06-03 20:05:22	SinglePassSamProgram	Processed   351,000,000 records.  Elapsed time: 00:08:54s.  Time for last 1,000,000:    1s.  Last read position: chr15:70,668,270
INFO	2026-06-03 20:05:24	SinglePassSamProgram	Processed   352,000,000 records.  Elapsed time: 00:08:56s.  Time for last 1,000,000:    1s.  Last read position: chr15:74,033,212
INFO	2026-06-03 20:05:25	SinglePassSamProgram	Processed   353,000,000 records.  Elapsed time: 00:08:57s.  Time for last 1,000,000:    1s.  Last read position: chr15:75,361,303
INFO	2026-06-03 20:05:27	SinglePassSamProgram	Processed   354,000,000 records.  Elapsed time: 00:08:59s.  Time for last 1,000,000:    1s.  Last read position: chr15:80,159,839
INFO	2026-06-03 20:05:28	SinglePassSamProgram	Processed   355,000,000 records.  Elapsed time: 00:09:00s.  Time for last 1,000,000:    1s.  Last read position: chr15:84,797,867
INFO	2026-06-03 20:05:30	SinglePassSamProgram	Processed   356,000,000 records.  Elapsed time: 00:09:02s.  Time for last 1,000,000:    1s.  Last read position: chr15:90,068,544
INFO	2026-06-03 20:05:32	SinglePassSamProgram	Processed   357,000,000 records.  Elapsed time: 00:09:04s.  Time for last 1,000,000:    1s.  Last read position: chr15:99,386,038
INFO	2026-06-03 20:05:33	SinglePassSamProgram	Processed   358,000,000 records.  Elapsed time: 00:09:05s.  Time for last 1,000,000:    1s.  Last read position: chr16:655,318
INFO	2026-06-03 20:05:35	SinglePassSamProgram	Processed   359,000,000 records.  Elapsed time: 00:09:07s.  Time for last 1,000,000:    1s.  Last read position: chr16:1,788,589
INFO	2026-06-03 20:05:37	SinglePassSamProgram	Processed   360,000,000 records.  Elapsed time: 00:09:09s.  Time for last 1,000,000:    1s.  Last read position: chr16:2,253,978
INFO	2026-06-03 20:05:39	SinglePassSamProgram	Processed   361,000,000 records.  Elapsed time: 00:09:11s.  Time for last 1,000,000:    1s.  Last read position: chr16:2,766,897
INFO	2026-06-03 20:05:40	SinglePassSamProgram	Processed   362,000,000 records.  Elapsed time: 00:09:13s.  Time for last 1,000,000:    1s.  Last read position: chr16:3,731,276
INFO	2026-06-03 20:05:42	SinglePassSamProgram	Processed   363,000,000 records.  Elapsed time: 00:09:14s.  Time for last 1,000,000:    1s.  Last read position: chr16:10,879,032
INFO	2026-06-03 20:05:43	SinglePassSamProgram	Processed   364,000,000 records.  Elapsed time: 00:09:15s.  Time for last 1,000,000:    1s.  Last read position: chr16:14,919,068
INFO	2026-06-03 20:05:44	SinglePassSamProgram	Processed   365,000,000 records.  Elapsed time: 00:09:17s.  Time for last 1,000,000:    1s.  Last read position: chr16:15,735,516
INFO	2026-06-03 20:05:46	SinglePassSamProgram	Processed   366,000,000 records.  Elapsed time: 00:09:18s.  Time for last 1,000,000:    1s.  Last read position: chr16:16,367,806
INFO	2026-06-03 20:05:48	SinglePassSamProgram	Processed   367,000,000 records.  Elapsed time: 00:09:20s.  Time for last 1,000,000:    1s.  Last read position: chr16:18,387,011
INFO	2026-06-03 20:05:49	SinglePassSamProgram	Processed   368,000,000 records.  Elapsed time: 00:09:21s.  Time for last 1,000,000:    1s.  Last read position: chr16:21,402,751
INFO	2026-06-03 20:05:50	SinglePassSamProgram	Processed   369,000,000 records.  Elapsed time: 00:09:23s.  Time for last 1,000,000:    1s.  Last read position: chr16:21,834,749
INFO	2026-06-03 20:05:52	SinglePassSamProgram	Processed   370,000,000 records.  Elapsed time: 00:09:24s.  Time for last 1,000,000:    1s.  Last read position: chr16:22,459,481
INFO	2026-06-03 20:05:53	SinglePassSamProgram	Processed   371,000,000 records.  Elapsed time: 00:09:25s.  Time for last 1,000,000:    1s.  Last read position: chr16:22,536,024
INFO	2026-06-03 20:05:55	SinglePassSamProgram	Processed   372,000,000 records.  Elapsed time: 00:09:27s.  Time for last 1,000,000:    1s.  Last read position: chr16:28,537,579
INFO	2026-06-03 20:05:56	SinglePassSamProgram	Processed   373,000,000 records.  Elapsed time: 00:09:29s.  Time for last 1,000,000:    1s.  Last read position: chr16:29,385,481
INFO	2026-06-03 20:05:58	SinglePassSamProgram	Processed   374,000,000 records.  Elapsed time: 00:09:30s.  Time for last 1,000,000:    1s.  Last read position: chr16:29,816,978
INFO	2026-06-03 20:06:00	SinglePassSamProgram	Processed   375,000,000 records.  Elapsed time: 00:09:32s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,225,516
INFO	2026-06-03 20:06:01	SinglePassSamProgram	Processed   376,000,000 records.  Elapsed time: 00:09:33s.  Time for last 1,000,000:    1s.  Last read position: chr16:30,738,809
INFO	2026-06-03 20:06:03	SinglePassSamProgram	Processed   377,000,000 records.  Elapsed time: 00:09:35s.  Time for last 1,000,000:    1s.  Last read position: chr16:31,477,389
INFO	2026-06-03 20:06:04	SinglePassSamProgram	Processed   378,000,000 records.  Elapsed time: 00:09:37s.  Time for last 1,000,000:    1s.  Last read position: chr16:55,479,486
INFO	2026-06-03 20:06:06	SinglePassSamProgram	Processed   379,000,000 records.  Elapsed time: 00:09:38s.  Time for last 1,000,000:    1s.  Last read position: chr16:57,661,913
INFO	2026-06-03 20:06:08	SinglePassSamProgram	Processed   380,000,000 records.  Elapsed time: 00:09:40s.  Time for last 1,000,000:    1s.  Last read position: chr16:67,390,263
INFO	2026-06-03 20:06:10	SinglePassSamProgram	Processed   381,000,000 records.  Elapsed time: 00:09:42s.  Time for last 1,000,000:    1s.  Last read position: chr16:69,196,102
INFO	2026-06-03 20:06:11	SinglePassSamProgram	Processed   382,000,000 records.  Elapsed time: 00:09:43s.  Time for last 1,000,000:    1s.  Last read position: chr16:72,096,305
INFO	2026-06-03 20:06:13	SinglePassSamProgram	Processed   383,000,000 records.  Elapsed time: 00:09:45s.  Time for last 1,000,000:    1s.  Last read position: chr16:81,163,682
INFO	2026-06-03 20:06:15	SinglePassSamProgram	Processed   384,000,000 records.  Elapsed time: 00:09:47s.  Time for last 1,000,000:    1s.  Last read position: chr16:88,428,700
INFO	2026-06-03 20:06:17	SinglePassSamProgram	Processed   385,000,000 records.  Elapsed time: 00:09:49s.  Time for last 1,000,000:    1s.  Last read position: chr16:88,654,785
INFO	2026-06-03 20:06:18	SinglePassSamProgram	Processed   386,000,000 records.  Elapsed time: 00:09:51s.  Time for last 1,000,000:    1s.  Last read position: chr16:89,722,825
INFO	2026-06-03 20:06:20	SinglePassSamProgram	Processed   387,000,000 records.  Elapsed time: 00:09:52s.  Time for last 1,000,000:    1s.  Last read position: chr17:1,562,511
INFO	2026-06-03 20:06:22	SinglePassSamProgram	Processed   388,000,000 records.  Elapsed time: 00:09:54s.  Time for last 1,000,000:    1s.  Last read position: chr17:2,704,367
INFO	2026-06-03 20:06:23	SinglePassSamProgram	Processed   389,000,000 records.  Elapsed time: 00:09:55s.  Time for last 1,000,000:    1s.  Last read position: chr17:4,972,808
INFO	2026-06-03 20:06:25	SinglePassSamProgram	Processed   390,000,000 records.  Elapsed time: 00:09:57s.  Time for last 1,000,000:    1s.  Last read position: chr17:7,325,318
INFO	2026-06-03 20:06:26	SinglePassSamProgram	Processed   391,000,000 records.  Elapsed time: 00:09:58s.  Time for last 1,000,000:    1s.  Last read position: chr17:7,580,025
INFO	2026-06-03 20:06:27	SinglePassSamProgram	Processed   392,000,000 records.  Elapsed time: 00:10:00s.  Time for last 1,000,000:    1s.  Last read position: chr17:8,475,761
INFO	2026-06-03 20:06:29	SinglePassSamProgram	Processed   393,000,000 records.  Elapsed time: 00:10:01s.  Time for last 1,000,000:    1s.  Last read position: chr17:17,173,938
INFO	2026-06-03 20:06:30	SinglePassSamProgram	Processed   394,000,000 records.  Elapsed time: 00:10:02s.  Time for last 1,000,000:    1s.  Last read position: chr17:19,380,956
INFO	2026-06-03 20:06:31	SinglePassSamProgram	Processed   395,000,000 records.  Elapsed time: 00:10:04s.  Time for last 1,000,000:    1s.  Last read position: chr17:28,749,650
INFO	2026-06-03 20:06:33	SinglePassSamProgram	Processed   396,000,000 records.  Elapsed time: 00:10:05s.  Time for last 1,000,000:    1s.  Last read position: chr17:32,142,494
INFO	2026-06-03 20:06:34	SinglePassSamProgram	Processed   397,000,000 records.  Elapsed time: 00:10:06s.  Time for last 1,000,000:    1s.  Last read position: chr17:36,953,137
INFO	2026-06-03 20:06:36	SinglePassSamProgram	Processed   398,000,000 records.  Elapsed time: 00:10:08s.  Time for last 1,000,000:    1s.  Last read position: chr17:38,898,409
INFO	2026-06-03 20:06:37	SinglePassSamProgram	Processed   399,000,000 records.  Elapsed time: 00:10:09s.  Time for last 1,000,000:    1s.  Last read position: chr17:40,093,138
INFO	2026-06-03 20:06:39	SinglePassSamProgram	Processed   400,000,000 records.  Elapsed time: 00:10:11s.  Time for last 1,000,000:    1s.  Last read position: chr17:41,771,682
INFO	2026-06-03 20:06:40	SinglePassSamProgram	Processed   401,000,000 records.  Elapsed time: 00:10:12s.  Time for last 1,000,000:    1s.  Last read position: chr17:42,707,961
INFO	2026-06-03 20:06:42	SinglePassSamProgram	Processed   402,000,000 records.  Elapsed time: 00:10:14s.  Time for last 1,000,000:    1s.  Last read position: chr17:44,880,602
INFO	2026-06-03 20:06:43	SinglePassSamProgram	Processed   403,000,000 records.  Elapsed time: 00:10:15s.  Time for last 1,000,000:    1s.  Last read position: chr17:47,017,333
INFO	2026-06-03 20:06:44	SinglePassSamProgram	Processed   404,000,000 records.  Elapsed time: 00:10:16s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,149,257
INFO	2026-06-03 20:06:46	SinglePassSamProgram	Processed   405,000,000 records.  Elapsed time: 00:10:18s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,185,548
INFO	2026-06-03 20:06:48	SinglePassSamProgram	Processed   406,000,000 records.  Elapsed time: 00:10:20s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,185,931
INFO	2026-06-03 20:06:49	SinglePassSamProgram	Processed   407,000,000 records.  Elapsed time: 00:10:21s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,186,506
INFO	2026-06-03 20:06:51	SinglePassSamProgram	Processed   408,000,000 records.  Elapsed time: 00:10:23s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,186,874
INFO	2026-06-03 20:06:53	SinglePassSamProgram	Processed   409,000,000 records.  Elapsed time: 00:10:25s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,187,052
INFO	2026-06-03 20:06:55	SinglePassSamProgram	Processed   410,000,000 records.  Elapsed time: 00:10:27s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,187,511
INFO	2026-06-03 20:06:56	SinglePassSamProgram	Processed   411,000,000 records.  Elapsed time: 00:10:28s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,187,941
INFO	2026-06-03 20:06:57	SinglePassSamProgram	Processed   412,000,000 records.  Elapsed time: 00:10:30s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,188,119
INFO	2026-06-03 20:06:59	SinglePassSamProgram	Processed   413,000,000 records.  Elapsed time: 00:10:31s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,188,578
INFO	2026-06-03 20:07:01	SinglePassSamProgram	Processed   414,000,000 records.  Elapsed time: 00:10:33s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,188,775
INFO	2026-06-03 20:07:03	SinglePassSamProgram	Processed   415,000,000 records.  Elapsed time: 00:10:35s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,188,992
INFO	2026-06-03 20:07:05	SinglePassSamProgram	Processed   416,000,000 records.  Elapsed time: 00:10:37s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,189,396
INFO	2026-06-03 20:07:06	SinglePassSamProgram	Processed   417,000,000 records.  Elapsed time: 00:10:38s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,189,483
INFO	2026-06-03 20:07:08	SinglePassSamProgram	Processed   418,000,000 records.  Elapsed time: 00:10:40s.  Time for last 1,000,000:    2s.  Last read position: chr17:50,189,685
INFO	2026-06-03 20:07:10	SinglePassSamProgram	Processed   419,000,000 records.  Elapsed time: 00:10:42s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,189,902
INFO	2026-06-03 20:07:11	SinglePassSamProgram	Processed   420,000,000 records.  Elapsed time: 00:10:44s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,190,038
INFO	2026-06-03 20:07:13	SinglePassSamProgram	Processed   421,000,000 records.  Elapsed time: 00:10:45s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,190,332
INFO	2026-06-03 20:07:14	SinglePassSamProgram	Processed   422,000,000 records.  Elapsed time: 00:10:46s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,190,823
INFO	2026-06-03 20:07:16	SinglePassSamProgram	Processed   423,000,000 records.  Elapsed time: 00:10:48s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,191,392
INFO	2026-06-03 20:07:17	SinglePassSamProgram	Processed   424,000,000 records.  Elapsed time: 00:10:49s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,191,818
INFO	2026-06-03 20:07:18	SinglePassSamProgram	Processed   425,000,000 records.  Elapsed time: 00:10:50s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,192,473
INFO	2026-06-03 20:07:20	SinglePassSamProgram	Processed   426,000,000 records.  Elapsed time: 00:10:52s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,192,666
INFO	2026-06-03 20:07:22	SinglePassSamProgram	Processed   427,000,000 records.  Elapsed time: 00:10:54s.  Time for last 1,000,000:    2s.  Last read position: chr17:50,192,836
INFO	2026-06-03 20:07:24	SinglePassSamProgram	Processed   428,000,000 records.  Elapsed time: 00:10:56s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,193,946
INFO	2026-06-03 20:07:26	SinglePassSamProgram	Processed   429,000,000 records.  Elapsed time: 00:10:58s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,194,019
INFO	2026-06-03 20:07:28	SinglePassSamProgram	Processed   430,000,000 records.  Elapsed time: 00:11:00s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,194,363
INFO	2026-06-03 20:07:30	SinglePassSamProgram	Processed   431,000,000 records.  Elapsed time: 00:11:02s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,194,582
INFO	2026-06-03 20:07:32	SinglePassSamProgram	Processed   432,000,000 records.  Elapsed time: 00:11:04s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,194,747
INFO	2026-06-03 20:07:34	SinglePassSamProgram	Processed   433,000,000 records.  Elapsed time: 00:11:06s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,195,070
INFO	2026-06-03 20:07:35	SinglePassSamProgram	Processed   434,000,000 records.  Elapsed time: 00:11:07s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,195,448
INFO	2026-06-03 20:07:36	SinglePassSamProgram	Processed   435,000,000 records.  Elapsed time: 00:11:09s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,195,598
INFO	2026-06-03 20:07:38	SinglePassSamProgram	Processed   436,000,000 records.  Elapsed time: 00:11:10s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,195,954
INFO	2026-06-03 20:07:39	SinglePassSamProgram	Processed   437,000,000 records.  Elapsed time: 00:11:11s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,196,169
INFO	2026-06-03 20:07:41	SinglePassSamProgram	Processed   438,000,000 records.  Elapsed time: 00:11:13s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,196,328
INFO	2026-06-03 20:07:43	SinglePassSamProgram	Processed   439,000,000 records.  Elapsed time: 00:11:15s.  Time for last 1,000,000:    2s.  Last read position: chr17:50,196,509
INFO	2026-06-03 20:07:45	SinglePassSamProgram	Processed   440,000,000 records.  Elapsed time: 00:11:17s.  Time for last 1,000,000:    2s.  Last read position: chr17:50,196,653
INFO	2026-06-03 20:07:47	SinglePassSamProgram	Processed   441,000,000 records.  Elapsed time: 00:11:19s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,197,048
INFO	2026-06-03 20:07:49	SinglePassSamProgram	Processed   442,000,000 records.  Elapsed time: 00:11:21s.  Time for last 1,000,000:    2s.  Last read position: chr17:50,197,744
INFO	2026-06-03 20:07:51	SinglePassSamProgram	Processed   443,000,000 records.  Elapsed time: 00:11:23s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,198,173
INFO	2026-06-03 20:07:52	SinglePassSamProgram	Processed   444,000,000 records.  Elapsed time: 00:11:24s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,198,495
INFO	2026-06-03 20:07:53	SinglePassSamProgram	Processed   445,000,000 records.  Elapsed time: 00:11:26s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,199,269
INFO	2026-06-03 20:07:55	SinglePassSamProgram	Processed   446,000,000 records.  Elapsed time: 00:11:27s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,199,435
INFO	2026-06-03 20:07:56	SinglePassSamProgram	Processed   447,000,000 records.  Elapsed time: 00:11:28s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,199,820
INFO	2026-06-03 20:07:57	SinglePassSamProgram	Processed   448,000,000 records.  Elapsed time: 00:11:29s.  Time for last 1,000,000:    1s.  Last read position: chr17:50,385,160
INFO	2026-06-03 20:07:58	SinglePassSamProgram	Processed   449,000,000 records.  Elapsed time: 00:11:30s.  Time for last 1,000,000:    1s.  Last read position: chr17:59,661,452
INFO	2026-06-03 20:07:59	SinglePassSamProgram	Processed   450,000,000 records.  Elapsed time: 00:11:31s.  Time for last 1,000,000:    1s.  Last read position: chr17:63,415,608
INFO	2026-06-03 20:08:01	SinglePassSamProgram	Processed   451,000,000 records.  Elapsed time: 00:11:33s.  Time for last 1,000,000:    1s.  Last read position: chr17:65,961,587
INFO	2026-06-03 20:08:02	SinglePassSamProgram	Processed   452,000,000 records.  Elapsed time: 00:11:34s.  Time for last 1,000,000:    1s.  Last read position: chr17:73,235,523
INFO	2026-06-03 20:08:04	SinglePassSamProgram	Processed   453,000,000 records.  Elapsed time: 00:11:36s.  Time for last 1,000,000:    1s.  Last read position: chr17:75,671,815
INFO	2026-06-03 20:08:06	SinglePassSamProgram	Processed   454,000,000 records.  Elapsed time: 00:11:38s.  Time for last 1,000,000:    1s.  Last read position: chr17:77,402,256
INFO	2026-06-03 20:08:07	SinglePassSamProgram	Processed   455,000,000 records.  Elapsed time: 00:11:39s.  Time for last 1,000,000:    1s.  Last read position: chr17:80,140,027
INFO	2026-06-03 20:08:09	SinglePassSamProgram	Processed   456,000,000 records.  Elapsed time: 00:11:41s.  Time for last 1,000,000:    1s.  Last read position: chr17:81,550,921
INFO	2026-06-03 20:08:10	SinglePassSamProgram	Processed   457,000,000 records.  Elapsed time: 00:11:42s.  Time for last 1,000,000:    1s.  Last read position: chr17:82,086,485
INFO	2026-06-03 20:08:11	SinglePassSamProgram	Processed   458,000,000 records.  Elapsed time: 00:11:43s.  Time for last 1,000,000:    1s.  Last read position: chr18:3,277,364
INFO	2026-06-03 20:08:12	SinglePassSamProgram	Processed   459,000,000 records.  Elapsed time: 00:11:44s.  Time for last 1,000,000:    1s.  Last read position: chr18:15,010,480
INFO	2026-06-03 20:08:14	SinglePassSamProgram	Processed   460,000,000 records.  Elapsed time: 00:11:46s.  Time for last 1,000,000:    1s.  Last read position: chr18:45,865,714
INFO	2026-06-03 20:08:15	SinglePassSamProgram	Processed   461,000,000 records.  Elapsed time: 00:11:47s.  Time for last 1,000,000:    1s.  Last read position: chr18:62,102,792
INFO	2026-06-03 20:08:17	SinglePassSamProgram	Processed   462,000,000 records.  Elapsed time: 00:11:49s.  Time for last 1,000,000:    1s.  Last read position: chr19:582,519
INFO	2026-06-03 20:08:18	SinglePassSamProgram	Processed   463,000,000 records.  Elapsed time: 00:11:50s.  Time for last 1,000,000:    1s.  Last read position: chr19:1,108,672
INFO	2026-06-03 20:08:20	SinglePassSamProgram	Processed   464,000,000 records.  Elapsed time: 00:11:52s.  Time for last 1,000,000:    1s.  Last read position: chr19:1,863,057
INFO	2026-06-03 20:08:21	SinglePassSamProgram	Processed   465,000,000 records.  Elapsed time: 00:11:53s.  Time for last 1,000,000:    1s.  Last read position: chr19:3,433,522
INFO	2026-06-03 20:08:22	SinglePassSamProgram	Processed   466,000,000 records.  Elapsed time: 00:11:55s.  Time for last 1,000,000:    1s.  Last read position: chr19:4,511,476
INFO	2026-06-03 20:08:24	SinglePassSamProgram	Processed   467,000,000 records.  Elapsed time: 00:11:56s.  Time for last 1,000,000:    1s.  Last read position: chr19:5,621,366
INFO	2026-06-03 20:08:25	SinglePassSamProgram	Processed   468,000,000 records.  Elapsed time: 00:11:58s.  Time for last 1,000,000:    1s.  Last read position: chr19:6,697,714
INFO	2026-06-03 20:08:27	SinglePassSamProgram	Processed   469,000,000 records.  Elapsed time: 00:11:59s.  Time for last 1,000,000:    1s.  Last read position: chr19:7,869,860
INFO	2026-06-03 20:08:28	SinglePassSamProgram	Processed   470,000,000 records.  Elapsed time: 00:12:00s.  Time for last 1,000,000:    1s.  Last read position: chr19:9,980,805
INFO	2026-06-03 20:08:29	SinglePassSamProgram	Processed   471,000,000 records.  Elapsed time: 00:12:01s.  Time for last 1,000,000:    1s.  Last read position: chr19:10,793,820
INFO	2026-06-03 20:08:30	SinglePassSamProgram	Processed   472,000,000 records.  Elapsed time: 00:12:02s.  Time for last 1,000,000:    1s.  Last read position: chr19:12,015,535
INFO	2026-06-03 20:08:31	SinglePassSamProgram	Processed   473,000,000 records.  Elapsed time: 00:12:03s.  Time for last 1,000,000:    1s.  Last read position: chr19:13,153,196
INFO	2026-06-03 20:08:33	SinglePassSamProgram	Processed   474,000,000 records.  Elapsed time: 00:12:05s.  Time for last 1,000,000:    1s.  Last read position: chr19:14,621,714
INFO	2026-06-03 20:08:34	SinglePassSamProgram	Processed   475,000,000 records.  Elapsed time: 00:12:06s.  Time for last 1,000,000:    1s.  Last read position: chr19:15,256,931
INFO	2026-06-03 20:08:35	SinglePassSamProgram	Processed   476,000,000 records.  Elapsed time: 00:12:07s.  Time for last 1,000,000:    1s.  Last read position: chr19:16,829,503
INFO	2026-06-03 20:08:36	SinglePassSamProgram	Processed   477,000,000 records.  Elapsed time: 00:12:08s.  Time for last 1,000,000:    1s.  Last read position: chr19:17,862,178
INFO	2026-06-03 20:08:38	SinglePassSamProgram	Processed   478,000,000 records.  Elapsed time: 00:12:10s.  Time for last 1,000,000:    1s.  Last read position: chr19:18,782,908
INFO	2026-06-03 20:08:39	SinglePassSamProgram	Processed   479,000,000 records.  Elapsed time: 00:12:11s.  Time for last 1,000,000:    1s.  Last read position: chr19:20,369,816
INFO	2026-06-03 20:08:40	SinglePassSamProgram	Processed   480,000,000 records.  Elapsed time: 00:12:12s.  Time for last 1,000,000:    1s.  Last read position: chr19:35,121,236
INFO	2026-06-03 20:08:42	SinglePassSamProgram	Processed   481,000,000 records.  Elapsed time: 00:12:14s.  Time for last 1,000,000:    1s.  Last read position: chr19:36,016,098
INFO	2026-06-03 20:08:43	SinglePassSamProgram	Processed   482,000,000 records.  Elapsed time: 00:12:15s.  Time for last 1,000,000:    1s.  Last read position: chr19:38,840,518
INFO	2026-06-03 20:08:44	SinglePassSamProgram	Processed   483,000,000 records.  Elapsed time: 00:12:16s.  Time for last 1,000,000:    0s.  Last read position: chr19:39,433,398
INFO	2026-06-03 20:08:45	SinglePassSamProgram	Processed   484,000,000 records.  Elapsed time: 00:12:17s.  Time for last 1,000,000:    1s.  Last read position: chr19:40,691,981
INFO	2026-06-03 20:08:46	SinglePassSamProgram	Processed   485,000,000 records.  Elapsed time: 00:12:18s.  Time for last 1,000,000:    0s.  Last read position: chr19:42,226,107
INFO	2026-06-03 20:08:47	SinglePassSamProgram	Processed   486,000,000 records.  Elapsed time: 00:12:19s.  Time for last 1,000,000:    1s.  Last read position: chr19:42,352,399
INFO	2026-06-03 20:08:48	SinglePassSamProgram	Processed   487,000,000 records.  Elapsed time: 00:12:20s.  Time for last 1,000,000:    1s.  Last read position: chr19:45,140,564
INFO	2026-06-03 20:08:49	SinglePassSamProgram	Processed   488,000,000 records.  Elapsed time: 00:12:21s.  Time for last 1,000,000:    1s.  Last read position: chr19:45,831,450
INFO	2026-06-03 20:08:50	SinglePassSamProgram	Processed   489,000,000 records.  Elapsed time: 00:12:22s.  Time for last 1,000,000:    0s.  Last read position: chr19:47,701,756
INFO	2026-06-03 20:08:51	SinglePassSamProgram	Processed   490,000,000 records.  Elapsed time: 00:12:23s.  Time for last 1,000,000:    1s.  Last read position: chr19:48,965,515
INFO	2026-06-03 20:08:52	SinglePassSamProgram	Processed   491,000,000 records.  Elapsed time: 00:12:24s.  Time for last 1,000,000:    1s.  Last read position: chr19:49,534,359
INFO	2026-06-03 20:08:53	SinglePassSamProgram	Processed   492,000,000 records.  Elapsed time: 00:12:26s.  Time for last 1,000,000:    1s.  Last read position: chr19:49,909,064
INFO	2026-06-03 20:08:54	SinglePassSamProgram	Processed   493,000,000 records.  Elapsed time: 00:12:27s.  Time for last 1,000,000:    0s.  Last read position: chr19:53,237,872
INFO	2026-06-03 20:08:55	SinglePassSamProgram	Processed   494,000,000 records.  Elapsed time: 00:12:28s.  Time for last 1,000,000:    1s.  Last read position: chr19:54,461,595
INFO	2026-06-03 20:08:57	SinglePassSamProgram	Processed   495,000,000 records.  Elapsed time: 00:12:29s.  Time for last 1,000,000:    1s.  Last read position: chr19:55,644,967
INFO	2026-06-03 20:08:58	SinglePassSamProgram	Processed   496,000,000 records.  Elapsed time: 00:12:30s.  Time for last 1,000,000:    1s.  Last read position: chr19:58,246,367
INFO	2026-06-03 20:08:59	SinglePassSamProgram	Processed   497,000,000 records.  Elapsed time: 00:12:31s.  Time for last 1,000,000:    1s.  Last read position: chr20:2,800,400
INFO	2026-06-03 20:09:01	SinglePassSamProgram	Processed   498,000,000 records.  Elapsed time: 00:12:33s.  Time for last 1,000,000:    1s.  Last read position: chr20:5,557,967
INFO	2026-06-03 20:09:02	SinglePassSamProgram	Processed   499,000,000 records.  Elapsed time: 00:12:34s.  Time for last 1,000,000:    1s.  Last read position: chr20:17,660,325
INFO	2026-06-03 20:09:03	SinglePassSamProgram	Processed   500,000,000 records.  Elapsed time: 00:12:35s.  Time for last 1,000,000:    1s.  Last read position: chr20:32,326,861
INFO	2026-06-03 20:09:04	SinglePassSamProgram	Processed   501,000,000 records.  Elapsed time: 00:12:36s.  Time for last 1,000,000:    1s.  Last read position: chr20:35,626,715
INFO	2026-06-03 20:09:05	SinglePassSamProgram	Processed   502,000,000 records.  Elapsed time: 00:12:37s.  Time for last 1,000,000:    1s.  Last read position: chr20:38,641,778
INFO	2026-06-03 20:09:06	SinglePassSamProgram	Processed   503,000,000 records.  Elapsed time: 00:12:38s.  Time for last 1,000,000:    1s.  Last read position: chr20:45,253,082
INFO	2026-06-03 20:09:07	SinglePassSamProgram	Processed   504,000,000 records.  Elapsed time: 00:12:39s.  Time for last 1,000,000:    1s.  Last read position: chr20:47,702,632
INFO	2026-06-03 20:09:08	SinglePassSamProgram	Processed   505,000,000 records.  Elapsed time: 00:12:40s.  Time for last 1,000,000:    1s.  Last read position: chr20:53,576,607
INFO	2026-06-03 20:09:09	SinglePassSamProgram	Processed   506,000,000 records.  Elapsed time: 00:12:41s.  Time for last 1,000,000:    1s.  Last read position: chr20:62,006,742
INFO	2026-06-03 20:09:10	SinglePassSamProgram	Processed   507,000,000 records.  Elapsed time: 00:12:42s.  Time for last 1,000,000:    1s.  Last read position: chr20:63,493,151
INFO	2026-06-03 20:09:11	SinglePassSamProgram	Processed   508,000,000 records.  Elapsed time: 00:12:43s.  Time for last 1,000,000:    1s.  Last read position: chr21:5,035,419
INFO	2026-06-03 20:09:13	SinglePassSamProgram	Processed   509,000,000 records.  Elapsed time: 00:12:45s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,216,811
INFO	2026-06-03 20:09:14	SinglePassSamProgram	Processed   510,000,000 records.  Elapsed time: 00:12:46s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,258,927
INFO	2026-06-03 20:09:15	SinglePassSamProgram	Processed   511,000,000 records.  Elapsed time: 00:12:47s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,399,118
INFO	2026-06-03 20:09:17	SinglePassSamProgram	Processed   512,000,000 records.  Elapsed time: 00:12:49s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,441,951
INFO	2026-06-03 20:09:18	SinglePassSamProgram	Processed   513,000,000 records.  Elapsed time: 00:12:50s.  Time for last 1,000,000:    1s.  Last read position: chr21:8,444,541
INFO	2026-06-03 20:09:19	SinglePassSamProgram	Processed   514,000,000 records.  Elapsed time: 00:12:51s.  Time for last 1,000,000:    1s.  Last read position: chr21:29,555,054
INFO	2026-06-03 20:09:20	SinglePassSamProgram	Processed   515,000,000 records.  Elapsed time: 00:12:52s.  Time for last 1,000,000:    1s.  Last read position: chr21:34,886,999
INFO	2026-06-03 20:09:21	SinglePassSamProgram	Processed   516,000,000 records.  Elapsed time: 00:12:53s.  Time for last 1,000,000:    1s.  Last read position: chr21:42,852,254
INFO	2026-06-03 20:09:22	SinglePassSamProgram	Processed   517,000,000 records.  Elapsed time: 00:12:54s.  Time for last 1,000,000:    1s.  Last read position: chr21:45,456,133
INFO	2026-06-03 20:09:23	SinglePassSamProgram	Processed   518,000,000 records.  Elapsed time: 00:12:55s.  Time for last 1,000,000:    1s.  Last read position: chr21:45,989,619
INFO	2026-06-03 20:09:24	SinglePassSamProgram	Processed   519,000,000 records.  Elapsed time: 00:12:56s.  Time for last 1,000,000:    1s.  Last read position: chr21:45,998,897
INFO	2026-06-03 20:09:25	SinglePassSamProgram	Processed   520,000,000 records.  Elapsed time: 00:12:57s.  Time for last 1,000,000:    1s.  Last read position: chr21:46,114,051
INFO	2026-06-03 20:09:27	SinglePassSamProgram	Processed   521,000,000 records.  Elapsed time: 00:12:59s.  Time for last 1,000,000:    1s.  Last read position: chr21:46,129,031
INFO	2026-06-03 20:09:28	SinglePassSamProgram	Processed   522,000,000 records.  Elapsed time: 00:13:00s.  Time for last 1,000,000:    1s.  Last read position: chr22:18,536,745
INFO	2026-06-03 20:09:30	SinglePassSamProgram	Processed   523,000,000 records.  Elapsed time: 00:13:02s.  Time for last 1,000,000:    1s.  Last read position: chr22:21,695,022
INFO	2026-06-03 20:09:31	SinglePassSamProgram	Processed   524,000,000 records.  Elapsed time: 00:13:03s.  Time for last 1,000,000:    1s.  Last read position: chr22:24,187,254
INFO	2026-06-03 20:09:33	SinglePassSamProgram	Processed   525,000,000 records.  Elapsed time: 00:13:05s.  Time for last 1,000,000:    1s.  Last read position: chr22:29,286,928
INFO	2026-06-03 20:09:34	SinglePassSamProgram	Processed   526,000,000 records.  Elapsed time: 00:13:06s.  Time for last 1,000,000:    1s.  Last read position: chr22:31,088,528
INFO	2026-06-03 20:09:35	SinglePassSamProgram	Processed   527,000,000 records.  Elapsed time: 00:13:07s.  Time for last 1,000,000:    1s.  Last read position: chr22:36,285,865
INFO	2026-06-03 20:09:36	SinglePassSamProgram	Processed   528,000,000 records.  Elapsed time: 00:13:08s.  Time for last 1,000,000:    1s.  Last read position: chr22:37,678,681
INFO	2026-06-03 20:09:37	SinglePassSamProgram	Processed   529,000,000 records.  Elapsed time: 00:13:09s.  Time for last 1,000,000:    1s.  Last read position: chr22:39,045,020
INFO	2026-06-03 20:09:39	SinglePassSamProgram	Processed   530,000,000 records.  Elapsed time: 00:13:11s.  Time for last 1,000,000:    1s.  Last read position: chr22:41,258,016
INFO	2026-06-03 20:09:40	SinglePassSamProgram	Processed   531,000,000 records.  Elapsed time: 00:13:12s.  Time for last 1,000,000:    1s.  Last read position: chr22:45,168,205
INFO	2026-06-03 20:09:42	SinglePassSamProgram	Processed   532,000,000 records.  Elapsed time: 00:13:14s.  Time for last 1,000,000:    1s.  Last read position: chr22:49,909,914
INFO	2026-06-03 20:09:44	SinglePassSamProgram	Processed   533,000,000 records.  Elapsed time: 00:13:16s.  Time for last 1,000,000:    1s.  Last read position: chr22:50,468,446
INFO	2026-06-03 20:09:45	SinglePassSamProgram	Processed   534,000,000 records.  Elapsed time: 00:13:17s.  Time for last 1,000,000:    1s.  Last read position: chrX:2,714,442
INFO	2026-06-03 20:09:46	SinglePassSamProgram	Processed   535,000,000 records.  Elapsed time: 00:13:18s.  Time for last 1,000,000:    0s.  Last read position: chrX:3,323,210
INFO	2026-06-03 20:09:47	SinglePassSamProgram	Processed   536,000,000 records.  Elapsed time: 00:13:19s.  Time for last 1,000,000:    1s.  Last read position: chrX:20,209,345
INFO	2026-06-03 20:09:49	SinglePassSamProgram	Processed   537,000,000 records.  Elapsed time: 00:13:21s.  Time for last 1,000,000:    1s.  Last read position: chrX:45,148,408
INFO	2026-06-03 20:09:50	SinglePassSamProgram	Processed   538,000,000 records.  Elapsed time: 00:13:22s.  Time for last 1,000,000:    1s.  Last read position: chrX:49,040,467
INFO	2026-06-03 20:09:51	SinglePassSamProgram	Processed   539,000,000 records.  Elapsed time: 00:13:23s.  Time for last 1,000,000:    1s.  Last read position: chrX:53,617,134
INFO	2026-06-03 20:09:52	SinglePassSamProgram	Processed   540,000,000 records.  Elapsed time: 00:13:24s.  Time for last 1,000,000:    1s.  Last read position: chrX:71,299,966
INFO	2026-06-03 20:09:53	SinglePassSamProgram	Processed   541,000,000 records.  Elapsed time: 00:13:25s.  Time for last 1,000,000:    1s.  Last read position: chrX:81,202,234
INFO	2026-06-03 20:09:54	SinglePassSamProgram	Processed   542,000,000 records.  Elapsed time: 00:13:26s.  Time for last 1,000,000:    1s.  Last read position: chrX:119,240,392
INFO	2026-06-03 20:09:55	SinglePassSamProgram	Processed   543,000,000 records.  Elapsed time: 00:13:27s.  Time for last 1,000,000:    1s.  Last read position: chrX:139,796,452
INFO	2026-06-03 20:09:56	SinglePassSamProgram	Processed   544,000,000 records.  Elapsed time: 00:13:28s.  Time for last 1,000,000:    1s.  Last read position: chrX:153,952,846
INFO	2026-06-03 20:09:57	SinglePassSamProgram	Processed   545,000,000 records.  Elapsed time: 00:13:29s.  Time for last 1,000,000:    1s.  Last read position: chrX:154,367,436
INFO	2026-06-03 20:09:58	SinglePassSamProgram	Processed   546,000,000 records.  Elapsed time: 00:13:31s.  Time for last 1,000,000:    1s.  Last read position: GL000194.1:56,357
INFO	2026-06-03 20:09:59	SinglePassSamProgram	Processed   547,000,000 records.  Elapsed time: 00:13:32s.  Time for last 1,000,000:    0s.  Last read position: GL000220.1:116,272
INFO	2026-06-03 20:10:01	SinglePassSamProgram	Processed   548,000,000 records.  Elapsed time: 00:13:33s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:158,128
INFO	2026-06-03 20:10:02	SinglePassSamProgram	Processed   549,000,000 records.  Elapsed time: 00:13:34s.  Time for last 1,000,000:    1s.  Last read position: GL000220.1:160,730
INFO	2026-06-03 20:10:04	SinglePassSamProgram	Processed   550,000,000 records.  Elapsed time: 00:13:36s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:131,052
INFO	2026-06-03 20:10:05	SinglePassSamProgram	Processed   551,000,000 records.  Elapsed time: 00:13:37s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:176,051
INFO	2026-06-03 20:10:07	SinglePassSamProgram	Processed   552,000,000 records.  Elapsed time: 00:13:39s.  Time for last 1,000,000:    1s.  Last read position: KI270733.1:178,677
INFO	2026-06-03 20:10:07	RExecutor	Executing R script via command: Rscript /tmp/script7448186036404584796.R /tmp/nxf.XXXXWmzxIt/aih-tih-sc-242a7d-R1_A23YTGFLT4_1_collectinsertsize.txt /tmp/nxf.XXXXWmzxIt/aih-tih-sc-242a7d-R1_A23YTGFLT4_1_collectinsertsize.pdf aih-tih-sc-242a7d-R1_A23YTGFLT4_1.Aligned.sortedByCoord.out.bam
ERROR	2026-06-03 20:10:07	ProcessExecutor	/bin/sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 20:10:07	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 20:10:07	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
ERROR	2026-06-03 20:10:07	ProcessExecutor	During startup - Warning messages:
ERROR	2026-06-03 20:10:07	ProcessExecutor	1: Setting LC_CTYPE failed, using "C" 
ERROR	2026-06-03 20:10:07	ProcessExecutor	2: Setting LC_COLLATE failed, using "C" 
ERROR	2026-06-03 20:10:07	ProcessExecutor	3: Setting LC_TIME failed, using "C" 
ERROR	2026-06-03 20:10:07	ProcessExecutor	4: Setting LC_MESSAGES failed, using "C" 
ERROR	2026-06-03 20:10:07	ProcessExecutor	5: Setting LC_MONETARY failed, using "C" 
ERROR	2026-06-03 20:10:07	ProcessExecutor	6: Setting LC_PAPER failed, using "C" 
ERROR	2026-06-03 20:10:07	ProcessExecutor	7: Setting LC_MEASUREMENT failed, using "C" 
INFO	2026-06-03 20:10:07	ProcessExecutor	null device 
INFO	2026-06-03 20:10:07	ProcessExecutor	          1 
ERROR	2026-06-03 20:10:07	ProcessExecutor	sh: warning: setlocale: LC_ALL: cannot change locale (en_US.UTF-8)
[Wed Jun 03 20:10:07 GMT 2026] picard.analysis.CollectInsertSizeMetrics done. Elapsed time: 13.67 minutes.
Runtime.totalMemory()=337641472