Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/631ebc4f52cb3f31ef0e92f3635291/aih-tih-sc-573e21-R1_A23YTGFLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-e543dae6-5fea-4720-bfb6-150bf1ff20d4/82/1bfcba5045fc10a52ca200a4890a9a/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/47793a32ccebcc2cbfb787f982bf54/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/47793a32ccebcc2cbfb787f982bf54/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/0ccbe0e4f9a654945f30ac8afec58b/aih-tih-sc-573e21-R1_A23YTGFLT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
TRRAP--SMURF1
starfusion
CNOT2--MYRFL
starfusion
RAB3IP--FRS2
starfusion
SH3KBP1--RPS6KA3
starfusion
TLK2--AC240565.1
starfusion
SEC23B--AC010183.2
starfusion
arriba
RPSAP52--HMGA2
starfusion
INPP5A--AL731769.2
starfusion
arriba
SH3KBP1--AL807740.1
arriba
SH3KBP1--AL807742.1
arriba
SEC23B--LINC02459
arriba
TVP23C--CDRT4
arriba
C1QTNF3--AMACR
arriba
STX16--NPEPL1
arriba
PPP6R3--AP003096.1
arriba
PPP6R3--GAL
arriba
LYN--TGS1
arriba
OTOAP1--SCNN1B
arriba
AC009021.2--SCNN1B
arriba
PDE4D--PSMA2P1
arriba
PDE4D--AP003497.1
arriba
0%| | 0/21 [00:00<?, ?it/s]
Processing TRRAP--SMURF1: 0%| | 0/21 [00:00<?, ?it/s]
Processing TRRAP--SMURF1: 5%|▍ | 1/21 [00:00<00:02, 9.23it/s]
Processing CNOT2--MYRFL: 5%|▍ | 1/21 [00:00<00:02, 9.23it/s]
Processing CNOT2--MYRFL: 10%|▉ | 2/21 [00:00<00:02, 9.47it/s]
Processing RAB3IP--FRS2: 10%|▉ | 2/21 [00:00<00:02, 9.47it/s]
Processing RAB3IP--FRS2: 14%|█▍ | 3/21 [00:00<00:01, 9.55it/s]
Processing SH3KBP1--RPS6KA3: 14%|█▍ | 3/21 [00:00<00:01, 9.55it/s]
Processing SH3KBP1--RPS6KA3: 19%|█▉ | 4/21 [00:00<00:01, 9.58it/s]
Processing TLK2--AC240565.1: 19%|█▉ | 4/21 [00:00<00:01, 9.58it/s]
Processing TLK2--AC240565.1: 24%|██▍ | 5/21 [00:00<00:01, 9.61it/s]
Processing SEC23B--AC010183.2: 24%|██▍ | 5/21 [00:00<00:01, 9.61it/s]
Processing SEC23B--AC010183.2: 29%|██▊ | 6/21 [00:00<00:01, 9.62it/s]
Processing RPSAP52--HMGA2: 29%|██▊ | 6/21 [00:00<00:01, 9.62it/s]
Processing RPSAP52--HMGA2: 33%|███▎ | 7/21 [00:00<00:01, 9.62it/s]
Processing INPP5A--AL731769.2: 33%|███▎ | 7/21 [00:00<00:01, 9.62it/s]
Processing INPP5A--AL731769.2: 38%|███▊ | 8/21 [00:00<00:01, 9.63it/s]
Processing SH3KBP1--AL807740.1: 38%|███▊ | 8/21 [00:00<00:01, 9.63it/s]
Processing SH3KBP1--AL807740.1: 43%|████▎ | 9/21 [00:00<00:01, 9.63it/s]
Processing SH3KBP1--AL807742.1: 43%|████▎ | 9/21 [00:00<00:01, 9.63it/s]
Processing SH3KBP1--AL807742.1: 48%|████▊ | 10/21 [00:01<00:01, 9.63it/s]
Processing SEC23B--LINC02459: 48%|████▊ | 10/21 [00:01<00:01, 9.63it/s]
Processing SEC23B--LINC02459: 52%|█████▏ | 11/21 [00:01<00:01, 9.64it/s]
Processing TVP23C--CDRT4: 52%|█████▏ | 11/21 [00:01<00:01, 9.64it/s]
Processing TVP23C--CDRT4: 57%|█████▋ | 12/21 [00:01<00:00, 9.64it/s]
Processing C1QTNF3--AMACR: 57%|█████▋ | 12/21 [00:01<00:00, 9.64it/s]
Processing C1QTNF3--AMACR: 62%|██████▏ | 13/21 [00:01<00:00, 9.64it/s]
Processing STX16--NPEPL1: 62%|██████▏ | 13/21 [00:01<00:00, 9.64it/s]
Processing STX16--NPEPL1: 67%|██████▋ | 14/21 [00:01<00:00, 9.64it/s]
Processing PPP6R3--AP003096.1: 67%|██████▋ | 14/21 [00:01<00:00, 9.64it/s]
Processing PPP6R3--AP003096.1: 71%|███████▏ | 15/21 [00:01<00:00, 9.64it/s]
Processing PPP6R3--GAL: 71%|███████▏ | 15/21 [00:01<00:00, 9.64it/s]
Processing PPP6R3--GAL: 76%|███████▌ | 16/21 [00:01<00:00, 9.64it/s]
Processing LYN--TGS1: 76%|███████▌ | 16/21 [00:01<00:00, 9.64it/s]
Processing LYN--TGS1: 81%|████████ | 17/21 [00:01<00:00, 9.65it/s]
Processing OTOAP1--SCNN1B: 81%|████████ | 17/21 [00:01<00:00, 9.65it/s]
Processing OTOAP1--SCNN1B: 86%|████████▌ | 18/21 [00:01<00:00, 9.65it/s]
Processing AC009021.2--SCNN1B: 86%|████████▌ | 18/21 [00:01<00:00, 9.65it/s]
Processing AC009021.2--SCNN1B: 90%|█████████ | 19/21 [00:01<00:00, 9.65it/s]
Processing PDE4D--PSMA2P1: 90%|█████████ | 19/21 [00:01<00:00, 9.65it/s]
Processing PDE4D--PSMA2P1: 95%|█████████▌| 20/21 [00:02<00:00, 9.64it/s]
Processing PDE4D--AP003497.1: 95%|█████████▌| 20/21 [00:02<00:00, 9.64it/s]
Processing PDE4D--AP003497.1: 100%|██████████| 21/21 [00:02<00:00, 9.64it/s]
Processing PDE4D--AP003497.1: 100%|██████████| 21/21 [00:02<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory