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FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv
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s3://natera-platform-sandbox/pipeline-outputs/cgp_runs/nextflow/dev_rna_exp0009_exp0010/B23MHV2LT4/nfcore_rnafusion__2cae617--20260515-145204/fusioninspector/FFPE_V4_0001_RNA_0003_B23MHV2LT4_1.FusionInspector.fusions.abridged.tsv
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8.6 KB
Workflow Run
dev_rna_exp09_10-2cae617
Published
May 16, 2026 7:20 AM

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#FusionName JunctionReadCount SpanningFragCount est_J est_S LeftGene LeftLocalBreakpoint LeftBreakpoint RightGene RightLocalBreakpoint RightBreakpoint SpliceType LargeAnchorSupport NumCounterFusionLeft NumCounterFusionRight FAR_left FAR_right LeftBreakDinuc LeftBreakEntropy RightBreakDinuc RightBreakEntropy FFPM microh_brkpt_dist num_microh_near_brkpt
FGFR3--TACC3 6878 21 6878.00 20.94 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 27590 chr4:1739702:+ ONLY_REF_SPLICE YES 87 3375 78.41 2.04 GT 1.8892 AG 1.7819 23.3603 627 0
FGFR3--TACC3 6 21 6.00 0.02 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27593 chr4:1739705:+ INCL_NON_REF_SPLICE YES 25 3453 1.08 0.01 GA 1.8892 TA 1.5219 0.0204 623 0
FGFR3--TACC3 6 21 6.00 0.02 FGFR3^ENSG00000068078.20 9880 chr4:1806936:+ TACC3^ENSG00000013810.20 27591 chr4:1739703:+ INCL_NON_REF_SPLICE YES 25 3436 1.08 0.01 GA 1.8892 GG 1.7819 0.0204 625 0
FGFR3--TACC3 5 18 5.00 0.01 FGFR3^ENSG00000068078.20 9874 chr4:1806930:+ TACC3^ENSG00000013810.20 27587 chr4:1739699:+ INCL_NON_REF_SPLICE YES 242 3313 0.10 0.01 CG 1.9219 AG 1.7819 0.0169 632 0
FGFR3--TACC3 3 21 3.00 0.01 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ TACC3^ENSG00000013810.20 22063 chr4:1730798:+ INCL_NON_REF_SPLICE NO 87 3590 0.28 0.01 GT 1.8892 AG 1.6895 0.0102 1411 0
FGFR3--TACC3 3 13 3.00 0.01 FGFR3^ENSG00000068078.20 9859 chr4:1806915:+ TACC3^ENSG00000013810.20 27591 chr4:1739703:+ INCL_NON_REF_SPLICE NO 406 3436 0.04 0.00 TA 1.8062 GG 1.7819 0.0102 636 0
TMPRSS2--ERG 6744 0 6744.00 0.00 TMPRSS2^ENSG00000184012.14 4652 chr21:41508081:- ERG^ENSG00000157554.19 28751 chr21:38584945:- ONLY_REF_SPLICE YES 2 122 2248.33 54.84 GT 1.6895 AG 1.9219 22.8357 1104 0
TMPRSS2--ERG 8 0 8.00 0.00 TMPRSS2^ENSG00000184012.14 4656 chr21:41508077:- ERG^ENSG00000157554.19 28753 chr21:38584943:- INCL_NON_REF_SPLICE YES 0 137 9.00 0.07 GC 1.6729 GT 1.8295 0.0271 1106 0
TMPRSS2--ERG 6 0 6.00 0.00 TMPRSS2^ENSG00000184012.14 4653 chr21:41508080:- ERG^ENSG00000157554.19 28753 chr21:38584943:- INCL_NON_REF_SPLICE YES 2 137 2.33 0.05 TG 1.6402 GT 1.8295 0.0203 1106 0
TMPRSS2--ERG 4 0 4.00 0.00 TMPRSS2^ENSG00000184012.14 4656 chr21:41508077:- ERG^ENSG00000157554.19 36652 chr21:38445508:- INCL_NON_REF_SPLICE YES 0 2644 5.00 0.00 GC 1.6729 AC 1.9656 0.0135 298 0
TMPRSS2--ERG 1 0 1.00 0.00 TMPRSS2^ENSG00000184012.14 10965 chr21:41488394:- ERG^ENSG00000157554.19 36539 chr21:38445621:- ONLY_REF_SPLICE YES 0 2768 2.00 0.00 GT 1.8892 AG 1.9656 0.0034 5157 0
TPM3--NTRK1 2413 11 2413.00 10.98 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42070 chr1:156874571:+ ONLY_REF_SPLICE YES 9614 56 0.25 42.54 GT 1.9329 AG 1.6895 8.2078 355 0
TPM3--NTRK1 4 11 4.00 0.02 TPM3^ENSG00000143549.21 13389 chr1:154170400:- NTRK1^ENSG00000198400.13 42071 chr1:156874572:+ INCL_NON_REF_SPLICE YES 9614 61 0.00 0.26 GT 1.9329 GA 1.7056 0.0136 356 0
CD74--ROS1 1951 11 1951.00 10.91 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48731 chr6:117324415:- ONLY_REF_SPLICE YES 30918 68 0.06 28.45 GT 1.7819 AG 1.7465 6.6431 2407 0
CD74--ROS1 6 11 6.00 0.03 CD74^ENSG00000019582.16 4987 chr5:150404683:- ROS1^ENSG00000047936.11 48729 chr6:117324417:- INCL_NON_REF_SPLICE YES 32886 0 0.00 18.00 AA 1.8295 TT 1.5301 0.0204 2405 0
CD74--ROS1 6 11 6.00 0.03 CD74^ENSG00000019582.16 4992 chr5:150404678:- ROS1^ENSG00000047936.11 48732 chr6:117324414:- INCL_NON_REF_SPLICE YES 30917 74 0.00 0.24 AC 1.9329 GA 1.8295 0.0204 2408 0
CD74--ROS1 6 3 6.00 0.01 CD74^ENSG00000019582.16 4989 chr5:150404681:- ROS1^ENSG00000047936.11 48779 chr6:117324367:- INCL_NON_REF_SPLICE YES 32747 392 0.00 0.03 GG 1.7819 TG 1.7465 0.0203 2384 0
CD74--ROS1 3 11 3.00 0.02 CD74^ENSG00000019582.16 4990 chr5:150404680:- ROS1^ENSG00000047936.11 48729 chr6:117324417:- INCL_NON_REF_SPLICE YES 30918 0 0.00 15.00 GT 1.7819 TT 1.5301 0.0103 2408 0
CD74--ROS1 5 0 5.00 0.00 CD74^ENSG00000019582.16 2522 chr5:150407148:- ROS1^ENSG00000047936.11 48727 chr6:117324419:- INCL_NON_REF_SPLICE YES 28899 0 0.00 6.00 GT 1.8892 TA 1.4566 0.0169 1162 0
ETV6--NTRK3 1942 13 1942.00 13.00 ETV6^ENSG00000139083.11 11237 chr12:11869969:+ NTRK3^ENSG00000140538.16 46238 chr15:87940753:- ONLY_REF_SPLICE YES 3227 27 0.61 69.86 GT 1.7819 AG 1.9656 6.6198 1252 0
LMNA--NTRK1 1707 19 1707.00 19.00 LMNA^ENSG00000160789.23 17733 chr1:156130773:+ NTRK1^ENSG00000198400.13 40289 chr1:156874906:+ ONLY_REF_SPLICE YES 5457 509 0.32 3.39 GT 1.7465 AG 1.5058 5.8443 947 0
FGFR3--BAIAP2L1 1624 5 1624.00 4.99 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16927 chr7:98362432:- ONLY_REF_SPLICE YES 89 53 18.11 30.19 GT 1.8892 AG 1.8062 5.5159 1171 0
FGFR3--BAIAP2L1 4 5 4.00 0.01 FGFR3^ENSG00000068078.20 9878 chr4:1806934:+ BAIAP2L1^ENSG00000006453.14 16928 chr7:98362431:- INCL_NON_REF_SPLICE YES 89 60 0.11 0.16 GT 1.8892 GA 1.8256 0.0135 1170 0
FGFR3--BAIAP2L1 3 0 3.00 0.00 FGFR3^ENSG00000068078.20 9877 chr4:1806933:+ BAIAP2L1^ENSG00000006453.14 20631 chr7:98317355:- INCL_NON_REF_SPLICE YES 150 210 0.03 0.02 CG 1.8892 GG 1.6729 0.0102 2325 0
NCOA4--RET 1297 7 1297.00 7.00 NCOA4^ENSG00000266412.6 9075 chr10:46012883:- RET^ENSG00000165731.20 30127 chr10:43116584:+ ONLY_REF_SPLICE YES 3089 730 0.42 1.79 GT 1.9086 AG 1.8323 4.4154 5144 0
CCDC6--RET 1216 7 1216.00 7.00 CCDC6^ENSG00000108091.11 1435 chr10:59906122:- RET^ENSG00000165731.20 31587 chr10:43116584:+ ONLY_REF_SPLICE YES 2444 730 0.50 1.67 GT 1.8892 AG 1.8323 4.1412 2092 0
KIF5B--RET 1147 3 1147.00 3.00 KIF5B^ENSG00000170759.11 19977 chr10:32017143:- RET^ENSG00000165731.20 38832 chr10:43114480:+ ONLY_REF_SPLICE YES 2081 25 0.55 44.27 GT 1.9656 AG 1.9656 3.894 3178 0
EML4--ALK 1129 1 1129.00 1.00 EML4^ENSG00000143924.19 17400 chr2:42295516:+ ALK^ENSG00000171094.18 59003 chr2:29223528:- ONLY_REF_SPLICE YES 999 58 1.13 19.17 GT 1.6895 AG 1.9086 3.8263 1550 0
PAX8--PPARG 968 7 968.00 7.00 PAX8^ENSG00000125618.18 9714 chr2:113235394:- PPARG^ENSG00000132170.23 31404 chr3:12379704:+ ONLY_REF_SPLICE YES 182 22 5.33 42.43 GT 1.8295 AG 1.9329 3.3014 1923 0
SLC45A3--BRAF 967 0 967.00 0.00 SLC45A3^ENSG00000158715.6 1116 chr1:205680394:- BRAF^ENSG00000157764.14 25172 chr7:140794467:- ONLY_REF_SPLICE YES 1 2195 484.00 0.44 GT 1.5628 AG 1.7465 3.2743 2599 0
TFG--NTRK1 964 9 964.00 9.00 TFG^ENSG00000114354.15 9135 chr3:100732672:+ NTRK1^ENSG00000198400.13 37655 chr1:156874571:+ ONLY_REF_SPLICE YES 3385 56 0.29 17.09 GT 1.9329 AG 1.6895 3.2947 883 0
SLC34A2--ROS1 894 39 894.00 38.50 SLC34A2^ENSG00000157765.13 6084 chr4:25664330:+ ROS1^ENSG00000047936.11 58025 chr6:117324415:- ONLY_REF_SPLICE YES 1 68 467.00 13.54 GT 1.8892 AG 1.7465 3.1575 999 0
SLC34A2--ROS1 6 31 6.00 0.20 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58028 chr6:117324412:- INCL_NON_REF_SPLICE YES 1 120 19.00 0.31 GA 1.7465 TG 1.8892 0.021 1002 0
SLC34A2--ROS1 6 28 6.00 0.18 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58030 chr6:117324410:- INCL_NON_REF_SPLICE YES 1 153 17.50 0.23 GA 1.7465 AT 1.9086 0.0209 1004 0
SLC34A2--ROS1 4 26 4.00 0.11 SLC34A2^ENSG00000157765.13 6088 chr4:25664334:+ ROS1^ENSG00000047936.11 58031 chr6:117324409:- INCL_NON_REF_SPLICE YES 1 164 15.50 0.19 GA 1.7465 TT 1.8892 0.0139 1005 0
SLC34A2--ROS1 4 0 4.00 0.00 SLC34A2^ENSG00000157765.13 4879 chr4:25662766:+ ROS1^ENSG00000047936.11 59187 chr6:117321316:- INCL_NON_REF_SPLICE YES 1191 1821 0.00 0.00 CT 1.8892 GG 1.8892 0.0135 2250 0
EGFR--SEPTIN14 858 8 858.00 8.00 EGFR^ENSG00000146648.19 30734 chr7:55200413:+ SEPTIN14^ENSG00000154997.9 54769 chr7:55796092:- ONLY_REF_SPLICE YES 20 36 41.29 23.43 GT 1.8892 AG 1.9899 2.9323 658 0
STX16--NPEPL1 200 7 200.00 6.85 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1478 201 0.14 1.03 GT 1.7968 AG 1.8256 0.7004 1940 0
STX16--NPEPL1 7 3 7.00 0.10 STX16^ENSG00000124222.22 7774 chr20:58671297:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1540 201 0.01 0.05 GT 1.8062 AG 1.8256 0.024 2729 0
STX16--NPEPL1 4 2 4.00 0.04 STX16^ENSG00000124222.22 8855 chr20:58673711:+ NPEPL1^ENSG00000215440.12 19290 chr20:58693737:+ ONLY_REF_SPLICE YES 1478 1189 0.00 0.01 GT 1.7968 AG 1.7819 0.0136 1248 0
STX16--NPEPL1 1 1 1.00 0.00 STX16^ENSG00000124222.22 7080 chr20:58670603:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 1634 201 0.00 0.01 GT 1.9086 AG 1.8256 0.0034 2386 0
STX16--NPEPL1 1 1 1.00 0.00 STX16^ENSG00000124222.22 1835 chr20:58652087:+ NPEPL1^ENSG00000215440.12 17277 chr20:58691724:+ ONLY_REF_SPLICE YES 2619 201 0.00 0.01 GT 1.9899 AG 1.8256 0.0034 1258 0
TLK2--AC240565.1 71 0 71.00 0.00 TLK2^ENSG00000146872.18 17137 chr17:62560126:+ AC240565.1^ENSG00000280136.2 41242 chr17:106864:- ONLY_REF_SPLICE YES 855 47 0.08 1.50 GT 1.8892 AG 1.8892 0.2404 1734 0
44 rows