Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/8def2d293591c38dfc037737ec4e24/659_bR4-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/961b0a4a1525e6a2079c05d0e80110/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/961b0a4a1525e6a2079c05d0e80110/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/bbff57acb2bb689dae8c6ec27e98df/659_bR4-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
DOCK9--SERPINE2
starfusion
arriba
R3HDM1--RNF144A
starfusion
arriba
EML4--ALK
starfusion
arriba
GFPT1--ENOX2
starfusion
arriba
BCL2--ZNF521
starfusion
arriba
MRPS21--APH1A
starfusion
arriba
ZNF92--TDRD9
starfusion
arriba
MGAT4A--SNRNP200
starfusion
arriba
PLCL1--GULP1
starfusion
arriba
ZNF680--TMEM248
starfusion
arriba
RMND5A--KDM3A
starfusion
arriba
TLK2--AL669831.1
starfusion
TYW1--ZNF138
starfusion
arriba
RUNDC3B--ADAM22
starfusion
ATP11A--STK26
starfusion
KDM3A--TOP1
starfusion
FBXO25--AC240565.1
starfusion
STX16--NPEPL1
starfusion
arriba
ROCK2--ZNF385B
arriba
KDM5C--KMT2C
arriba
DTNB--SERPINE2
arriba
DTNB--USP21P1
arriba
PCDHGA1--PCDHGA8
arriba
PCDHGA1--PCDHGA9
arriba
PCDHGA1--PCDHGB6
arriba
PCDHGA1--PCDHGA10
arriba
PCDHGA1--PCDHGB7
arriba
PCDHGA1--PCDHGA11
arriba
PCDHGA1--PCDHGA12
arriba
PCDHGA1--PCDHGC3
arriba
PCDHGA1--PCDHGC4
arriba
PCDHGA1--PCDHGC5
arriba
AC015911.9--SLFN12L
arriba
TVP23C--CDRT4
arriba
SLFN11--SLFN12
arriba
IGFL1P2--HIF3A
arriba
PPP1R13B--ZNF138
arriba
MED14--PRRG1
arriba
MED14--FTH1P19
arriba
TDRD9--ZNF107
arriba
PARP8--LINC00276
arriba
ORC2--AC068196.1
arriba
LINC01654--IGSF21
arriba
IGSF21--IGSF21
arriba
MED14--FTH1P27
arriba
AC217774.2--CRHR1
arriba
CRHR1--CRHR1
arriba
ZNF521--ZNF521
arriba
ZNF521--RN7SL97P
arriba
KLRC4--KLRK1
arriba
ZNF92--RNU6-1254P
arriba
ZNF92--LINC02604
arriba
RNF144A--AC068725.1
arriba
AL512590.2--CCDC180
arriba
AC007785.3--IGFL2
arriba
LINC02210--CRHR1
arriba
AC217774.1--CRHR1
arriba
LRCH2--SPANXN1
arriba
LRCH2--TRMT1P1
arriba
PMS2P6--CCDC146
arriba
SLC25A12--AC092623.1
arriba
SLC25A12--MGAT5
arriba
0%| | 0/62 [00:00<?, ?it/s]
Processing DOCK9--SERPINE2: 0%| | 0/62 [00:00<?, ?it/s]
Processing DOCK9--SERPINE2: 2%|▏ | 1/62 [00:00<00:06, 9.24it/s]
Processing R3HDM1--RNF144A: 2%|▏ | 1/62 [00:00<00:06, 9.24it/s]
Processing R3HDM1--RNF144A: 3%|▎ | 2/62 [00:00<00:06, 9.47it/s]
Processing EML4--ALK: 3%|▎ | 2/62 [00:00<00:06, 9.47it/s]
Processing EML4--ALK: 5%|▍ | 3/62 [00:00<00:06, 9.55it/s]
Processing GFPT1--ENOX2: 5%|▍ | 3/62 [00:00<00:06, 9.55it/s]
Processing GFPT1--ENOX2: 6%|▋ | 4/62 [00:00<00:06, 9.59it/s]
Processing BCL2--ZNF521: 6%|▋ | 4/62 [00:00<00:06, 9.59it/s]
Processing BCL2--ZNF521: 8%|▊ | 5/62 [00:00<00:05, 9.61it/s]
Processing MRPS21--APH1A: 8%|▊ | 5/62 [00:00<00:05, 9.61it/s]
Processing MRPS21--APH1A: 10%|▉ | 6/62 [00:00<00:05, 9.62it/s]
Processing ZNF92--TDRD9: 10%|▉ | 6/62 [00:00<00:05, 9.62it/s]
Processing ZNF92--TDRD9: 11%|█▏ | 7/62 [00:00<00:05, 9.63it/s]
Processing MGAT4A--SNRNP200: 11%|█▏ | 7/62 [00:00<00:05, 9.63it/s]
Processing MGAT4A--SNRNP200: 13%|█▎ | 8/62 [00:00<00:05, 9.63it/s]
Processing PLCL1--GULP1: 13%|█▎ | 8/62 [00:00<00:05, 9.63it/s]
Processing PLCL1--GULP1: 15%|█▍ | 9/62 [00:00<00:05, 9.64it/s]
Processing ZNF680--TMEM248: 15%|█▍ | 9/62 [00:00<00:05, 9.64it/s]
Processing ZNF680--TMEM248: 16%|█▌ | 10/62 [00:01<00:05, 9.64it/s]
Processing RMND5A--KDM3A: 16%|█▌ | 10/62 [00:01<00:05, 9.64it/s]
Processing RMND5A--KDM3A: 18%|█▊ | 11/62 [00:01<00:05, 9.64it/s]
Processing TLK2--AL669831.1: 18%|█▊ | 11/62 [00:01<00:05, 9.64it/s]
Processing TLK2--AL669831.1: 19%|█▉ | 12/62 [00:01<00:05, 9.65it/s]
Processing TYW1--ZNF138: 19%|█▉ | 12/62 [00:01<00:05, 9.65it/s]
Processing TYW1--ZNF138: 21%|██ | 13/62 [00:01<00:05, 9.65it/s]
Processing RUNDC3B--ADAM22: 21%|██ | 13/62 [00:01<00:05, 9.65it/s]
Processing RUNDC3B--ADAM22: 23%|██▎ | 14/62 [00:01<00:04, 9.64it/s]
Processing ATP11A--STK26: 23%|██▎ | 14/62 [00:01<00:04, 9.64it/s]
Processing ATP11A--STK26: 24%|██▍ | 15/62 [00:01<00:04, 9.64it/s]
Processing KDM3A--TOP1: 24%|██▍ | 15/62 [00:01<00:04, 9.64it/s]
Processing KDM3A--TOP1: 26%|██▌ | 16/62 [00:01<00:04, 9.64it/s]
Processing FBXO25--AC240565.1: 26%|██▌ | 16/62 [00:01<00:04, 9.64it/s]
Processing FBXO25--AC240565.1: 27%|██▋ | 17/62 [00:01<00:04, 9.64it/s]
Processing STX16--NPEPL1: 27%|██▋ | 17/62 [00:01<00:04, 9.64it/s]
Processing STX16--NPEPL1: 29%|██▉ | 18/62 [00:01<00:04, 9.64it/s]
Processing ROCK2--ZNF385B: 29%|██▉ | 18/62 [00:01<00:04, 9.64it/s]
Processing ROCK2--ZNF385B: 31%|███ | 19/62 [00:01<00:04, 9.64it/s]
Processing KDM5C--KMT2C: 31%|███ | 19/62 [00:01<00:04, 9.64it/s]
Processing KDM5C--KMT2C: 32%|███▏ | 20/62 [00:02<00:04, 9.64it/s]
Processing DTNB--SERPINE2: 32%|███▏ | 20/62 [00:02<00:04, 9.64it/s]
Processing DTNB--SERPINE2: 34%|███▍ | 21/62 [00:02<00:04, 9.64it/s]
Processing DTNB--USP21P1: 34%|███▍ | 21/62 [00:02<00:04, 9.64it/s]
Processing DTNB--USP21P1: 35%|███▌ | 22/62 [00:02<00:04, 9.65it/s]
Processing PCDHGA1--PCDHGA8: 35%|███▌ | 22/62 [00:02<00:04, 9.65it/s]
Processing PCDHGA1--PCDHGA8: 37%|███▋ | 23/62 [00:02<00:04, 9.65it/s]
Processing PCDHGA1--PCDHGA9: 37%|███▋ | 23/62 [00:02<00:04, 9.65it/s]
Processing PCDHGA1--PCDHGA9: 39%|███▊ | 24/62 [00:02<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGB6: 39%|███▊ | 24/62 [00:02<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGB6: 40%|████ | 25/62 [00:02<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGA10: 40%|████ | 25/62 [00:02<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGA10: 42%|████▏ | 26/62 [00:02<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGB7: 42%|████▏ | 26/62 [00:02<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGB7: 44%|████▎ | 27/62 [00:02<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGA11: 44%|████▎ | 27/62 [00:02<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGA11: 45%|████▌ | 28/62 [00:02<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGA12: 45%|████▌ | 28/62 [00:02<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGA12: 47%|████▋ | 29/62 [00:03<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGC3: 47%|████▋ | 29/62 [00:03<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGC3: 48%|████▊ | 30/62 [00:03<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGC4: 48%|████▊ | 30/62 [00:03<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGC4: 50%|█████ | 31/62 [00:03<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGC5: 50%|█████ | 31/62 [00:03<00:03, 9.65it/s]
Processing PCDHGA1--PCDHGC5: 52%|█████▏ | 32/62 [00:03<00:03, 9.65it/s]
Processing AC015911.9--SLFN12L: 52%|█████▏ | 32/62 [00:03<00:03, 9.65it/s]
Processing AC015911.9--SLFN12L: 53%|█████▎ | 33/62 [00:03<00:03, 9.65it/s]
Processing TVP23C--CDRT4: 53%|█████▎ | 33/62 [00:03<00:03, 9.65it/s]
Processing TVP23C--CDRT4: 55%|█████▍ | 34/62 [00:03<00:02, 9.65it/s]
Processing SLFN11--SLFN12: 55%|█████▍ | 34/62 [00:03<00:02, 9.65it/s]
Processing SLFN11--SLFN12: 56%|█████▋ | 35/62 [00:03<00:02, 9.65it/s]
Processing IGFL1P2--HIF3A: 56%|█████▋ | 35/62 [00:03<00:02, 9.65it/s]
Processing IGFL1P2--HIF3A: 58%|█████▊ | 36/62 [00:03<00:02, 9.65it/s]
Processing PPP1R13B--ZNF138: 58%|█████▊ | 36/62 [00:03<00:02, 9.65it/s]
Processing PPP1R13B--ZNF138: 60%|█████▉ | 37/62 [00:03<00:02, 9.65it/s]
Processing MED14--PRRG1: 60%|█████▉ | 37/62 [00:03<00:02, 9.65it/s]
Processing MED14--PRRG1: 61%|██████▏ | 38/62 [00:03<00:02, 9.65it/s]
Processing MED14--FTH1P19: 61%|██████▏ | 38/62 [00:03<00:02, 9.65it/s]
Processing MED14--FTH1P19: 63%|██████▎ | 39/62 [00:04<00:02, 9.65it/s]
Processing TDRD9--ZNF107: 63%|██████▎ | 39/62 [00:04<00:02, 9.65it/s]
Processing TDRD9--ZNF107: 65%|██████▍ | 40/62 [00:04<00:02, 9.65it/s]
Processing PARP8--LINC00276: 65%|██████▍ | 40/62 [00:04<00:02, 9.65it/s]
Processing PARP8--LINC00276: 66%|██████▌ | 41/62 [00:04<00:02, 9.65it/s]
Processing ORC2--AC068196.1: 66%|██████▌ | 41/62 [00:04<00:02, 9.65it/s]
Processing ORC2--AC068196.1: 68%|██████▊ | 42/62 [00:04<00:02, 9.65it/s]
Processing LINC01654--IGSF21: 68%|██████▊ | 42/62 [00:04<00:02, 9.65it/s]
Processing LINC01654--IGSF21: 69%|██████▉ | 43/62 [00:04<00:01, 9.65it/s]
Processing IGSF21--IGSF21: 69%|██████▉ | 43/62 [00:04<00:01, 9.65it/s]
Processing IGSF21--IGSF21: 71%|███████ | 44/62 [00:04<00:01, 9.65it/s]
Processing MED14--FTH1P27: 71%|███████ | 44/62 [00:04<00:01, 9.65it/s]
Processing MED14--FTH1P27: 73%|███████▎ | 45/62 [00:04<00:01, 9.65it/s]
Processing AC217774.2--CRHR1: 73%|███████▎ | 45/62 [00:04<00:01, 9.65it/s]
Processing AC217774.2--CRHR1: 74%|███████▍ | 46/62 [00:04<00:01, 9.65it/s]
Processing CRHR1--CRHR1: 74%|███████▍ | 46/62 [00:04<00:01, 9.65it/s]
Processing CRHR1--CRHR1: 76%|███████▌ | 47/62 [00:04<00:01, 9.65it/s]
Processing ZNF521--ZNF521: 76%|███████▌ | 47/62 [00:04<00:01, 9.65it/s]
Processing ZNF521--ZNF521: 77%|███████▋ | 48/62 [00:04<00:01, 9.64it/s]
Processing ZNF521--RN7SL97P: 77%|███████▋ | 48/62 [00:04<00:01, 9.64it/s]
Processing ZNF521--RN7SL97P: 79%|███████▉ | 49/62 [00:05<00:01, 9.65it/s]
Processing KLRC4--KLRK1: 79%|███████▉ | 49/62 [00:05<00:01, 9.65it/s]
Processing KLRC4--KLRK1: 81%|████████ | 50/62 [00:05<00:01, 9.64it/s]
Processing ZNF92--RNU6-1254P: 81%|████████ | 50/62 [00:05<00:01, 9.64it/s]
Processing ZNF92--RNU6-1254P: 82%|████████▏ | 51/62 [00:05<00:01, 9.65it/s]
Processing ZNF92--LINC02604: 82%|████████▏ | 51/62 [00:05<00:01, 9.65it/s]
Processing ZNF92--LINC02604: 84%|████████▍ | 52/62 [00:05<00:01, 9.65it/s]
Processing RNF144A--AC068725.1: 84%|████████▍ | 52/62 [00:05<00:01, 9.65it/s]
Processing RNF144A--AC068725.1: 85%|████████▌ | 53/62 [00:05<00:00, 9.65it/s]
Processing AL512590.2--CCDC180: 85%|████████▌ | 53/62 [00:05<00:00, 9.65it/s]
Processing AL512590.2--CCDC180: 87%|████████▋ | 54/62 [00:05<00:00, 9.65it/s]
Processing AC007785.3--IGFL2: 87%|████████▋ | 54/62 [00:05<00:00, 9.65it/s]
Processing AC007785.3--IGFL2: 89%|████████▊ | 55/62 [00:05<00:00, 9.65it/s]
Processing LINC02210--CRHR1: 89%|████████▊ | 55/62 [00:05<00:00, 9.65it/s]
Processing LINC02210--CRHR1: 90%|█████████ | 56/62 [00:05<00:00, 9.65it/s]
Processing AC217774.1--CRHR1: 90%|█████████ | 56/62 [00:05<00:00, 9.65it/s]
Processing AC217774.1--CRHR1: 92%|█████████▏| 57/62 [00:05<00:00, 9.65it/s]
Processing LRCH2--SPANXN1: 92%|█████████▏| 57/62 [00:05<00:00, 9.65it/s]
Processing LRCH2--SPANXN1: 94%|█████████▎| 58/62 [00:06<00:00, 9.65it/s]
Processing LRCH2--TRMT1P1: 94%|█████████▎| 58/62 [00:06<00:00, 9.65it/s]
Processing LRCH2--TRMT1P1: 95%|█████████▌| 59/62 [00:06<00:00, 9.65it/s]
Processing PMS2P6--CCDC146: 95%|█████████▌| 59/62 [00:06<00:00, 9.65it/s]
Processing PMS2P6--CCDC146: 97%|█████████▋| 60/62 [00:06<00:00, 9.65it/s]
Processing SLC25A12--AC092623.1: 97%|█████████▋| 60/62 [00:06<00:00, 9.65it/s]
Processing SLC25A12--AC092623.1: 98%|█████████▊| 61/62 [00:06<00:00, 9.65it/s]
Processing SLC25A12--MGAT5: 98%|█████████▊| 61/62 [00:06<00:00, 9.65it/s]
Processing SLC25A12--MGAT5: 100%|██████████| 62/62 [00:06<00:00, 9.65it/s]
Processing SLC25A12--MGAT5: 100%|██████████| 62/62 [00:06<00:00, 9.64it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory