Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/329bda2dd666f97f279ce8cc1bc6e3/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/67/8c9ce0edb486b192ed681959994478/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/1d6f9762d21fa2c8891905da4de4a5/659_bjQ-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/77/329bda2dd666f97f279ce8cc1bc6e3/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
KIF5B--RET
starfusion
arriba
TLK2--AC240565.1
starfusion
PTPN2--NPIPB12
starfusion
CCDC198--NPIPB12
starfusion
TAF4--AC114498.1
starfusion
arriba
GUSBP13--NAIP
starfusion
STX16--NPEPL1
starfusion
arriba
RPSAP52--HMGA2
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGC3
arriba
TVP23C--CDRT4
arriba
ABCC4--RNY4P27
arriba
ABCC4--MEMO1P5
arriba
NOLC1--GBF1
arriba
AC015911.9--SLFN12L
arriba
AC092807.3--DDAH1
arriba
KLRC4--KLRK1
arriba
GLI3--AF246928.1
arriba
GLI3--AJ009632.2
arriba
RITA1--GLT8D2
arriba
TLK2P1--AC110079.1
arriba
TLK2--FAM157A
arriba
GTF2A1L--STON1-GTF2A1L
arriba
0%| | 0/31 [00:00<?, ?it/s]
Processing KIF5B--RET: 0%| | 0/31 [00:00<?, ?it/s]
Processing KIF5B--RET: 3%|▎ | 1/31 [00:00<00:03, 9.22it/s]
Processing TLK2--AC240565.1: 3%|▎ | 1/31 [00:00<00:03, 9.22it/s]
Processing TLK2--AC240565.1: 6%|▋ | 2/31 [00:00<00:03, 9.46it/s]
Processing PTPN2--NPIPB12: 6%|▋ | 2/31 [00:00<00:03, 9.46it/s]
Processing PTPN2--NPIPB12: 10%|▉ | 3/31 [00:00<00:02, 9.54it/s]
Processing CCDC198--NPIPB12: 10%|▉ | 3/31 [00:00<00:02, 9.54it/s]
Processing CCDC198--NPIPB12: 13%|█▎ | 4/31 [00:00<00:02, 9.58it/s]
Processing TAF4--AC114498.1: 13%|█▎ | 4/31 [00:00<00:02, 9.58it/s]
Processing TAF4--AC114498.1: 16%|█▌ | 5/31 [00:00<00:02, 9.60it/s]
Processing GUSBP13--NAIP: 16%|█▌ | 5/31 [00:00<00:02, 9.60it/s]
Processing GUSBP13--NAIP: 19%|█▉ | 6/31 [00:00<00:02, 9.61it/s]
Processing STX16--NPEPL1: 19%|█▉ | 6/31 [00:00<00:02, 9.61it/s]
Processing STX16--NPEPL1: 23%|██▎ | 7/31 [00:00<00:02, 9.62it/s]
Processing RPSAP52--HMGA2: 23%|██▎ | 7/31 [00:00<00:02, 9.62it/s]
Processing RPSAP52--HMGA2: 26%|██▌ | 8/31 [00:00<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 26%|██▌ | 8/31 [00:00<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGA8: 29%|██▉ | 9/31 [00:00<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 29%|██▉ | 9/31 [00:00<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 32%|███▏ | 10/31 [00:01<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 32%|███▏ | 10/31 [00:01<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGC5: 35%|███▌ | 11/31 [00:01<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGB6: 35%|███▌ | 11/31 [00:01<00:02, 9.63it/s]
Processing PCDHGB2--PCDHGB6: 39%|███▊ | 12/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 39%|███▊ | 12/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 42%|████▏ | 13/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 42%|████▏ | 13/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 45%|████▌ | 14/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 45%|████▌ | 14/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 48%|████▊ | 15/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 48%|████▊ | 15/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA12: 52%|█████▏ | 16/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 52%|█████▏ | 16/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA9: 55%|█████▍ | 17/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 55%|█████▍ | 17/31 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC3: 58%|█████▊ | 18/31 [00:01<00:01, 9.64it/s]
Processing TVP23C--CDRT4: 58%|█████▊ | 18/31 [00:01<00:01, 9.64it/s]
Processing TVP23C--CDRT4: 61%|██████▏ | 19/31 [00:01<00:01, 9.64it/s]
Processing ABCC4--RNY4P27: 61%|██████▏ | 19/31 [00:01<00:01, 9.64it/s]
Processing ABCC4--RNY4P27: 65%|██████▍ | 20/31 [00:02<00:01, 9.64it/s]
Processing ABCC4--MEMO1P5: 65%|██████▍ | 20/31 [00:02<00:01, 9.64it/s]
Processing ABCC4--MEMO1P5: 68%|██████▊ | 21/31 [00:02<00:01, 9.64it/s]
Processing NOLC1--GBF1: 68%|██████▊ | 21/31 [00:02<00:01, 9.64it/s]
Processing NOLC1--GBF1: 71%|███████ | 22/31 [00:02<00:00, 9.64it/s]
Processing AC015911.9--SLFN12L: 71%|███████ | 22/31 [00:02<00:00, 9.64it/s]
Processing AC015911.9--SLFN12L: 74%|███████▍ | 23/31 [00:02<00:00, 9.64it/s]
Processing AC092807.3--DDAH1: 74%|███████▍ | 23/31 [00:02<00:00, 9.64it/s]
Processing AC092807.3--DDAH1: 77%|███████▋ | 24/31 [00:02<00:00, 9.64it/s]
Processing KLRC4--KLRK1: 77%|███████▋ | 24/31 [00:02<00:00, 9.64it/s]
Processing KLRC4--KLRK1: 81%|████████ | 25/31 [00:02<00:00, 9.64it/s]
Processing GLI3--AF246928.1: 81%|████████ | 25/31 [00:02<00:00, 9.64it/s]
Processing GLI3--AF246928.1: 84%|████████▍ | 26/31 [00:02<00:00, 9.64it/s]
Processing GLI3--AJ009632.2: 84%|████████▍ | 26/31 [00:02<00:00, 9.64it/s]
Processing GLI3--AJ009632.2: 87%|████████▋ | 27/31 [00:02<00:00, 9.64it/s]
Processing RITA1--GLT8D2: 87%|████████▋ | 27/31 [00:02<00:00, 9.64it/s]
Processing RITA1--GLT8D2: 90%|█████████ | 28/31 [00:02<00:00, 9.64it/s]
Processing TLK2P1--AC110079.1: 90%|█████████ | 28/31 [00:02<00:00, 9.64it/s]
Processing TLK2P1--AC110079.1: 94%|█████████▎| 29/31 [00:03<00:00, 9.64it/s]
Processing TLK2--FAM157A: 94%|█████████▎| 29/31 [00:03<00:00, 9.64it/s]
Processing TLK2--FAM157A: 97%|█████████▋| 30/31 [00:03<00:00, 9.64it/s]
Processing GTF2A1L--STON1-GTF2A1L: 97%|█████████▋| 30/31 [00:03<00:00, 9.64it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 31/31 [00:03<00:00, 9.64it/s]
Processing GTF2A1L--STON1-GTF2A1L: 100%|██████████| 31/31 [00:03<00:00, 9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory