Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-40cc52c0-5bec-40b6-b04d-c64c51f55eff/db/fe6bfaaebdd11206eabb0652108538/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/55de01631a076fee6bb7977ef79103/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/102424baddb85ca2d76f0f3bea318b/659_bGc-T1-TRNA-1_B23MHV2LT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/05/55de01631a076fee6bb7977ef79103/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3b/69eab680c8a5785ec8e66cd9783c99/659_bGc-T1-TRNA-1_B23MHV2LT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
KIF5B--RET
starfusion
arriba
NOTCH2--NBPF11
starfusion
GUSBP2--NAIP
starfusion
arriba
CLIC2--TMLHE-AS1
starfusion
arriba
TLK2--LINC01002
starfusion
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGA12
arriba
PCDHGB2--PCDHGC3
arriba
TVP23C--CDRT4
arriba
STX16--NPEPL1
arriba
PCDHGA2--PCDHGA8
arriba
PCDHGA2--PCDHGA10
arriba
PCDHGA2--PCDHGC5
arriba
PCDHGA2--PCDHGC4
arriba
PCDHGA2--PCDHGB6
arriba
PCDHGA2--PCDHGA11
arriba
PCDHGA2--PCDHGA9
arriba
PCDHGA2--PCDHGB7
arriba
PCDHGA2--PCDHGA12
arriba
PCDHGA2--PCDHGC3
arriba
KLRC4--KLRK1
arriba
0%| | 0/28 [00:00<?, ?it/s]
Processing KIF5B--RET: 0%| | 0/28 [00:00<?, ?it/s]
Processing KIF5B--RET: 4%|▎ | 1/28 [00:00<00:02, 9.21it/s]
Processing NOTCH2--NBPF11: 4%|▎ | 1/28 [00:00<00:02, 9.21it/s]
Processing NOTCH2--NBPF11: 7%|▋ | 2/28 [00:00<00:02, 9.45it/s]
Processing GUSBP2--NAIP: 7%|▋ | 2/28 [00:00<00:02, 9.45it/s]
Processing GUSBP2--NAIP: 11%|█ | 3/28 [00:00<00:02, 9.53it/s]
Processing CLIC2--TMLHE-AS1: 11%|█ | 3/28 [00:00<00:02, 9.53it/s]
Processing CLIC2--TMLHE-AS1: 14%|█▍ | 4/28 [00:00<00:02, 9.57it/s]
Processing TLK2--LINC01002: 14%|█▍ | 4/28 [00:00<00:02, 9.57it/s]
Processing TLK2--LINC01002: 18%|█▊ | 5/28 [00:00<00:02, 9.59it/s]
Processing PCDHGB2--PCDHGA8: 18%|█▊ | 5/28 [00:00<00:02, 9.59it/s]
Processing PCDHGB2--PCDHGA8: 21%|██▏ | 6/28 [00:00<00:02, 9.61it/s]
Processing PCDHGB2--PCDHGA10: 21%|██▏ | 6/28 [00:00<00:02, 9.61it/s]
Processing PCDHGB2--PCDHGA10: 25%|██▌ | 7/28 [00:00<00:02, 9.61it/s]
Processing PCDHGB2--PCDHGC5: 25%|██▌ | 7/28 [00:00<00:02, 9.61it/s]
Processing PCDHGB2--PCDHGC5: 29%|██▊ | 8/28 [00:00<00:02, 9.62it/s]
Processing PCDHGB2--PCDHGC4: 29%|██▊ | 8/28 [00:00<00:02, 9.62it/s]
Processing PCDHGB2--PCDHGC4: 32%|███▏ | 9/28 [00:00<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGB6: 32%|███▏ | 9/28 [00:00<00:01, 9.62it/s]
Processing PCDHGB2--PCDHGB6: 36%|███▌ | 10/28 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 36%|███▌ | 10/28 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA11: 39%|███▉ | 11/28 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA9: 39%|███▉ | 11/28 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA9: 43%|████▎ | 12/28 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGB7: 43%|████▎ | 12/28 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGB7: 46%|████▋ | 13/28 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA12: 46%|████▋ | 13/28 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGA12: 50%|█████ | 14/28 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGC3: 50%|█████ | 14/28 [00:01<00:01, 9.63it/s]
Processing PCDHGB2--PCDHGC3: 54%|█████▎ | 15/28 [00:01<00:01, 9.63it/s]
Processing TVP23C--CDRT4: 54%|█████▎ | 15/28 [00:01<00:01, 9.63it/s]
Processing TVP23C--CDRT4: 57%|█████▋ | 16/28 [00:01<00:01, 9.63it/s]
Processing STX16--NPEPL1: 57%|█████▋ | 16/28 [00:01<00:01, 9.63it/s]
Processing STX16--NPEPL1: 61%|██████ | 17/28 [00:01<00:01, 9.63it/s]
Processing PCDHGA2--PCDHGA8: 61%|██████ | 17/28 [00:01<00:01, 9.63it/s]
Processing PCDHGA2--PCDHGA8: 64%|██████▍ | 18/28 [00:01<00:01, 9.63it/s]
Processing PCDHGA2--PCDHGA10: 64%|██████▍ | 18/28 [00:01<00:01, 9.63it/s]
Processing PCDHGA2--PCDHGA10: 68%|██████▊ | 19/28 [00:01<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGC5: 68%|██████▊ | 19/28 [00:01<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGC5: 71%|███████▏ | 20/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGC4: 71%|███████▏ | 20/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGC4: 75%|███████▌ | 21/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGB6: 75%|███████▌ | 21/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGB6: 79%|███████▊ | 22/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGA11: 79%|███████▊ | 22/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGA11: 82%|████████▏ | 23/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGA9: 82%|████████▏ | 23/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGA9: 86%|████████▌ | 24/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGB7: 86%|████████▌ | 24/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGB7: 89%|████████▉ | 25/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGA12: 89%|████████▉ | 25/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGA12: 93%|█████████▎| 26/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGC3: 93%|█████████▎| 26/28 [00:02<00:00, 9.63it/s]
Processing PCDHGA2--PCDHGC3: 96%|█████████▋| 27/28 [00:02<00:00, 9.63it/s]
Processing KLRC4--KLRK1: 96%|█████████▋| 27/28 [00:02<00:00, 9.63it/s]
Processing KLRC4--KLRK1: 100%|██████████| 28/28 [00:02<00:00, 9.63it/s]
Processing KLRC4--KLRK1: 100%|██████████| 28/28 [00:02<00:00, 9.61it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory