|
succeeded
|
NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet)
|
6s |
4s |
0s |
1s |
0 bytes |
194% |
71.2 KB |
1.4 KB |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation)
|
15s |
13s |
0s |
1s |
18.6 MB |
93% |
2.7 MB |
2.1 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (kid_diluent_germline)
|
10s |
3s |
5s |
2s |
316.8 MB |
376% |
100.5 MB |
2.5 MB |
0 bytes |
2.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (pan_diluent_germline)
|
9s |
2s |
5s |
2s |
320.0 MB |
387% |
100.4 MB |
2.4 MB |
0 bytes |
2.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (kid_diluent_germline;chr14_64122012-64122133.bed)
|
10m 37s |
11s |
4m 20s |
6m 5s |
3.5 GB |
1214% |
68.8 GB |
3.6 MB |
18.2 GB |
189.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (kid_diluent_germline;chr1_69091-70008.bed)
|
10m 38s |
9s |
4m 21s |
6m 7s |
3.5 GB |
1232% |
58.3 GB |
3.5 MB |
19.2 GB |
195.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (kid_diluent_germline;chr19_47340800-47341813.bed)
|
7m 25s |
11s |
1m 4s |
6m 9s |
3.7 GB |
1198% |
13.6 GB |
895.0 KB |
3.8 GB |
37.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (kid_diluent_germline;chr4_30730753-30730788.bed)
|
10m 24s |
5s |
4m 6s |
6m 12s |
3.5 GB |
1193% |
51.0 GB |
3.3 MB |
19.7 GB |
179.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (kid_diluent_germline;chr8_93795409-93795507.bed)
|
11m 5s |
8s |
4m 49s |
6m 7s |
3.7 GB |
1234% |
57.9 GB |
3.6 MB |
18.6 GB |
191.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (pan_diluent_germline;chr14_64122012-64122133.bed)
|
7m 26s |
11s |
3m 4s |
4m 10s |
2.9 GB |
1203% |
33.6 GB |
3.5 MB |
9.6 GB |
189.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (pan_diluent_germline;chr1_69091-70008.bed)
|
7m 28s |
10s |
3m 7s |
4m 10s |
2.7 GB |
1223% |
37.5 GB |
3.4 MB |
12.8 GB |
195.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (pan_diluent_germline;chr19_47340800-47341813.bed)
|
4m 53s |
9s |
26s |
4m 17s |
2.0 GB |
1153% |
5.8 GB |
862.6 KB |
165.7 MB |
37.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (pan_diluent_germline;chr4_30730753-30730788.bed)
|
8m 8s |
10s |
3m 47s |
4m 10s |
3.6 GB |
1233% |
38.4 GB |
3.2 MB |
15.1 GB |
179.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:SENTIEON_HAPLOTYPER (pan_diluent_germline;chr8_93795409-93795507.bed)
|
7m 1s |
10s |
2m 40s |
4m 10s |
2.9 GB |
1225% |
34.9 GB |
3.6 MB |
12.1 GB |
191.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:SENTIEON_HAPLOTYPER_VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (kid_diluent_germline)
|
1m 13s |
33s |
29s |
10s |
2.3 GB |
649% |
2.0 GB |
29.4 MB |
0 bytes |
22.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:SENTIEON_HAPLOTYPER_VCF_VARIANT_FILTERING_GATK:CNNSCOREVARIANTS (pan_diluent_germline)
|
1m 11s |
33s |
28s |
9s |
2.3 GB |
643% |
2.0 GB |
29.1 MB |
0 bytes |
22.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:SENTIEON_HAPLOTYPER_VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (kid_diluent_germline)
|
2m 3s |
15s |
1m 22s |
26s |
1.2 GB |
126% |
2.0 GB |
2.7 MB |
1.1 GB |
2.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:SENTIEON_HAPLOTYPER_VCF_VARIANT_FILTERING_GATK:FILTERVARIANTTRANCHES (pan_diluent_germline)
|
2m 2s |
16s |
1m 21s |
25s |
998.1 MB |
126% |
2.0 GB |
2.6 MB |
1.2 GB |
2.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (kid_diluent_germline)
|
5s |
3s |
0s |
1s |
13.2 MB |
109% |
6.6 MB |
460 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (pan_diluent_germline)
|
4s |
3s |
0s |
0s |
13.1 MB |
97% |
5.8 MB |
458 bytes |
0 bytes |
8.0 KB |
1 |