|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (kid_diluent_germline)
|
14m 6s |
1s |
7m 46s |
6m 19s |
1.9 GB |
308% |
99.4 GB |
999.8 MB |
99.0 GB |
1000.2 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (pan_diluent_germline)
|
9m 19s |
1s |
4m 55s |
4m 23s |
1.9 GB |
282% |
56.0 GB |
790.1 MB |
55.6 GB |
790.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (kid_diluent_germline)
|
38m 6s |
3s |
31m 28s |
6m 35s |
11.4 MB |
134% |
99.0 GB |
160.6 KB |
99.0 GB |
160.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (pan_diluent_germline)
|
24m 46s |
2s |
20m 24s |
4m 20s |
11.2 MB |
134% |
55.6 GB |
164.3 KB |
55.6 GB |
164.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:MULTIQC
|
30s |
19s |
7s |
3s |
1.0 GB |
382% |
100.0 MB |
16.9 MB |
8.0 KB |
16.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VARIANT_QC_TO_CSV (variant_qc_csv)
|
18s |
16s |
0s |
1s |
18.0 MB |
95% |
1.7 MB |
477 bytes |
0 bytes |
8.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (kid_diluent_germline;sentieon_haplotyper)
|
3s |
2s |
- |
- |
24.0 MB |
9678% |
1.9 MB |
406.0 KB |
0 bytes |
412.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:BCFTOOLS_STATS (pan_diluent_germline;sentieon_haplotyper)
|
3s |
1s |
- |
- |
24.7 MB |
8957% |
1.9 MB |
338.4 KB |
0 bytes |
344.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_SUMMARY (kid_diluent_germline;sentieon_haplotyper)
|
4s |
1s |
- |
- |
14.6 MB |
102% |
1.9 MB |
2.4 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_SUMMARY (pan_diluent_germline;sentieon_haplotyper)
|
3s |
1s |
- |
- |
14.4 MB |
108% |
1.8 MB |
2.4 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_TSTV_COUNT (kid_diluent_germline;sentieon_haplotyper)
|
4s |
1s |
- |
- |
14.3 MB |
98% |
1.9 MB |
2.3 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_TSTV_COUNT (pan_diluent_germline;sentieon_haplotyper)
|
3s |
1s |
- |
- |
14.6 MB |
99% |
1.8 MB |
2.3 KB |
0 bytes |
12.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_TSTV_QUAL (kid_diluent_germline;sentieon_haplotyper)
|
4s |
2s |
- |
- |
14.6 MB |
103% |
1.9 MB |
734.2 KB |
0 bytes |
740.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_TSTV_QUAL (pan_diluent_germline;sentieon_haplotyper)
|
4s |
1s |
- |
- |
14.5 MB |
92% |
1.8 MB |
607.2 KB |
0 bytes |
616.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:WRITE_TRACKER_YML
|
4s |
3s |
0s |
0s |
0 bytes |
171% |
96.1 KB |
452 bytes |
0 bytes |
4.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:UNZIP_ALLELES (G1000_alleles_hg38.zip)
|
6s |
4s |
- |
- |
11.0 MB |
101% |
9.8 MB |
30.0 MB |
0 bytes |
30.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:UNZIP_GC (GC_G1000_hg38.zip)
|
11s |
3s |
2s |
6s |
10.9 MB |
100% |
100.1 MB |
345.6 MB |
0 bytes |
345.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:UNZIP_LOCI (G1000_loci_hg38.zip)
|
4s |
2s |
- |
- |
10.6 MB |
97% |
8.3 MB |
33.1 MB |
0 bytes |
33.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:UNZIP_RT (RT_G1000_hg38.zip)
|
10s |
2s |
3s |
5s |
10.9 MB |
101% |
101.6 MB |
387.4 MB |
0 bytes |
387.5 MB |
1 |