Clear
Retried
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE (PatientA_normal) 8s 7s 0s 0s 0 bytes 72% 78.0 KB 547 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (PatientA_normal) 14s 12s 0s 1s 0 bytes 179% 76.3 KB 432 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientA_normal) 31s 4s 0s 26s 3.6 MB 98% 160.1 KB 755 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (PatientA_normal) 17s 6s 0s 10s 0 bytes 138% 85.5 KB 429 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_QC_SEX_ESTIMATION:BAM_ESTIMATE_SEX (PatientA_normal) 4s 3s - - 0 bytes 95% 66.5 KB 199 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (PatientA_normal) 12s 3s - - 3.3 MB 93% 125.6 KB 4.8 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (PatientA_normal) 14s 3s - - 3.2 MB 116% 147.0 KB 479 bytes 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientA_normal) 10s 1s 0s 8s 5.4 MB 87% 159.8 KB 751 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (PatientA_normal) 12s 1s 0s 10s 0 bytes 131% 98.8 KB 498 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (PatientA_normal) 51s 48s 0s 2s 0 bytes 168% 100.5 KB 785 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_GVCFS (PatientA_normal) 4s 1s 1s 2s 8.1 MB 252% 46.6 MB 1.4 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:SEQTK_SAMPLE (PatientA_normal) 3s 1s - - 0 bytes 70% 83.3 KB 378 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (PatientA_normal) 4s 1s 1s 2s 10.3 MB 268% 46.6 MB 1.4 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (PatientA_normal) 7s 5s 0s 1s 0 bytes 66% 86.1 KB 521 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientA_normal) 11s 2s 0s 8s 3.7 MB 2630% 115.9 KB 714 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED (PatientA_normal) 4s 2s 0s 1s 5.4 MB 2188% 115.5 KB 780 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientA_normal) 2s 1s - - 3.3 MB 1888% 109.5 KB 711 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC (PatientA_normal) 11s 2s 0s 8s 3.7 MB 2137% 115.8 KB 785 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (PatientA_normal) 7s 5s 0s 1s 5.5 MB 2204% 111.7 KB 809 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (PatientA_normal) 3s 2s 0s 0s 0 bytes 68% 82.2 KB 664 bytes 0 bytes 8.0 KB 1
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