Clear
Retried
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientB_normal) 31s 3s 0s 27s 3.6 MB 90% 161.0 KB 758 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (PatientB_normal) 10s 1s - - 3.2 MB 91% 126.0 KB 4.8 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (PatientB_normal) 11s 2s 0s 8s 0 bytes 65% 146.4 KB 495 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_QC_SEX_ESTIMATION:BAM_ESTIMATE_SEX (PatientB_normal) 3s 2s - - 0 bytes 89% 66.7 KB 199 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (PatientB_normal) 14s 3s - - 3.3 MB 109% 146.8 KB 476 bytes 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (PatientB_normal) 14s 12s 0s 1s 0 bytes 78% 76.1 KB 430 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (PatientB_normal) 14s 3s 0s 10s 0 bytes 68% 85.5 KB 428 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientB_normal) 13s 1s 0s 11s 5.6 MB 111% 160.5 KB 755 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (PatientB_normal) 7s 5s 0s 1s 0 bytes 73% 86.2 KB 520 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:SEQTK_SAMPLE (PatientB_normal) 3s 2s - - 0 bytes 69% 83.5 KB 379 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (PatientB_normal) 3s 1s 1s 1s 10.6 MB 260% 46.6 MB 1.4 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_GVCFS (PatientB_normal) 4s 2s 1s 1s 5.0 MB 263% 46.6 MB 1.4 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (PatientB_normal) 44s 41s 0s 2s 0 bytes 84% 100.5 KB 783 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientB_normal) 14s 2s 0s 11s 5.6 MB 2247% 115.9 KB 714 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE (PatientB_normal) 9s 8s 0s 0s 0 bytes 166% 77.9 KB 547 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientB_normal) 3s 1s - - 3.3 MB 2061% 109.8 KB 713 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED (PatientB_normal) 3s 2s 0s 0s 5.4 MB 2495% 115.7 KB 782 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC (PatientB_normal) 11s 2s 0s 8s 3.7 MB 2373% 115.7 KB 785 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (PatientB_normal) 3s 2s 0s 0s 3.5 MB 2304% 111.1 KB 806 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:INDEL_ENTROPY_ANNOTATION (PatientB_normal) 8s 6s 0s 1s 0 bytes 71% 81.9 KB 664 bytes 0 bytes 8.0 KB 1
32 items found |
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