Clear
Retried
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE (PatientC_normal) 4s 3s 0s 0s 0 bytes 79% 78.1 KB 547 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:SAMTOOLS_STATS (PatientC_normal) 12s 1s - - 3.2 MB 97% 126.0 KB 4.8 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (PatientC_normal) 36s 8s 0s 27s 3.5 MB 118% 162.2 KB 762 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (PatientC_normal) 15s 5s 0s 9s 0 bytes 131% 85.5 KB 429 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:SEQTK_SAMPLE (PatientC_normal) 4s 3s - - 0 bytes 68% 82.6 KB 375 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_FILTER_LOW_READS:SAMTOOLS_IDXSTATS_COUNT (PatientC_normal) 13s 11s 0s 1s 0 bytes 75% 75.9 KB 430 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_QC_SEX_ESTIMATION:BAM_ESTIMATE_SEX (PatientC_normal) 3s 2s - - 0 bytes 89% 66.7 KB 199 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:CRAM_QC_RECAL:MOSDEPTH (PatientC_normal) 11s 1s - - 3.2 MB 113% 147.0 KB 478 bytes 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLE_INTEGRITY:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (PatientC_normal) 12s 1s 0s 10s 0 bytes 130% 98.9 KB 499 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:DIFF_DV_SENTIEON (PatientC_normal) 7s 5s 0s 1s 0 bytes 69% 86.4 KB 524 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (PatientC_normal) 13s 1s 0s 11s 5.5 MB 113% 160.1 KB 753 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_VCFS (PatientC_normal) 4s 1s - - 10.6 MB 277% 46.6 MB 1.4 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER:MERGE_SENTIEON_HAPLOTYPER_GVCFS (PatientC_normal) 4s 1s 1s 2s 6.4 MB 256% 46.6 MB 1.4 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (PatientC_normal) 53s 48s 0s 4s 3.4 MB 89% 100.4 KB 784 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:MERGE_FORCECALLED (PatientC_normal) 4s 2s 0s 1s 3.5 MB 2458% 115.9 KB 783 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_NORM (PatientC_normal) 14s 2s 0s 11s 5.5 MB 2214% 116.3 KB 716 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_CANDIDATES:BCFTOOLS_SORT (PatientC_normal) 3s 1s - - 3.3 MB 2117% 109.5 KB 711 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SPLIT_MULTIALLELIC (PatientC_normal) 11s 2s 0s 8s 5.6 MB 2439% 116.4 KB 788 bytes 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:VCF_ANNOTATE_INDEL_ENTROPY:BCFTOOLS_QUERY (PatientC_normal) 3s 2s 0s 0s 3.5 MB 2295% 111.4 KB 809 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SENTIEON_HAPLOTYPER_RF:SENTIEON_HAPLOTYPER_RF_FILTER (PatientC_normal) 7s 5s 0s 1s 0 bytes 70% 87.3 KB 634 bytes 0 bytes 8.0 KB 1
22 items found |
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