Work Directory

Task
NFCORE_SAREK:SAREK:VCF_QC_BCFTOOLS_VCFTOOLS:VCFTOOLS_TSTV_QUAL (PatientA_tumor1_vs_PatientA_normal;manta)
Attempt
1
S3 Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/e9667ec1f235a7331a5d6ea2b5df7a

Files (72)

Name Size Modified
.command.begin 6 bytes May 28, 2026 9:34 AM
.command.err 0 bytes May 28, 2026 9:34 AM
.command.log 659 bytes May 28, 2026 9:34 AM
.command.out 0 bytes May 28, 2026 9:34 AM
.command.run 15.7 KB May 28, 2026 9:34 AM
.command.sh 4.3 KB May 28, 2026 9:34 AM
.command.trace 246 bytes May 28, 2026 9:34 AM
.command.yaml 3.6 KB May 28, 2026 9:34 AM
.exitcode 1 byte May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.012 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.012.indv 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.012.pos 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.BEAGLE.GL 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.BEAGLE.PL 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.FILTER.summary 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.FORMAT 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.INFO 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.LROH 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.Tajima.D 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.TsTv 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.TsTv.count 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.TsTv.qual 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.TsTv.summary 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.bcf 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.diff.discordance.matrix 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.diff.indv 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.diff.indv_in_files 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.diff.sites 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.diff.sites_in_files 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.diff.switch 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.frq 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.frq.count 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.gdepth 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.geno.chisq 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.geno.ld 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.hap.ld 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.hapcount 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.het 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.hwe 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.idepth 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.ifreqburden 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.imiss 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.impute.hap 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.impute.hap.indv 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.impute.hap.legend 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.indel.hist 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.interchrom.geno.ld 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.interchrom.hap.ld 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.kept.sites 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.ldepth 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.ldepth.mean 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.ldhat.locs 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.ldhat.sites 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.list.geno.ld 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.list.hap.ld 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.lmiss 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.lqual 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.map 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.mendel 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.ped 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.relatedness 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.relatedness2 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.removed.sites 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.singletons 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.sites.pi 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.snpden 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.tfam 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.tped 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.vcf 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.weir.fst 0 bytes May 28, 2026 9:34 AM
PatientA_tumor1_vs_PatientA_normal.manta.diploid_sv.windowed.pi 0 bytes May 28, 2026 9:34 AM
versions.yml 87 bytes May 28, 2026 9:34 AM