Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/c0245ecb359325a9a7b51ebaedf239/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/b91b3b6a46dbed43b186d15b61890f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d6/b91b3b6a46dbed43b186d15b61890f/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-gnzbmxzo because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:59:21,670 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:59:22,467 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:59:22,635 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:59:23,555 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:59:23,626 - cnv_pipe.batch.run_model - INFO - Processing cluster 1006 with 192 probes
2026-05-27 04:59:24,093 - cnv_pipe.batch.run_model.cluster1006 - INFO - Child process started for cluster 1006 with 192 probes
2026-05-27 05:00:21,585 - cnv_pipe.batch.run_model.cluster1006 - INFO - Child process finished cluster 1006. Wrote cluster_1006_samples.csv and cluster_1006_params.csv
2026-05-27 05:00:21,587 - cnv_pipe.batch.run_model - INFO - Cluster 1006 finished in 57.96 seconds. Status: SUCCESS