File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d1/3bfaae5a4c68876cd3c9028b496ce6/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_1;chr19_15162349-15162662.bed)
Attempt

Content

View in new tab 
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAcZZDC/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAcZZDC/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXAcZZDC/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T04:54:38.912348Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:38.913528Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:38.913539Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:38.913543Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:38.913547Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAcZZDC'
[2026-05-27T04:54:38.913551Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:38.913558Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:38.913562Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:38.913566Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:38.913571Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:38.913575Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:38.913579Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:38.913583Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:38.913588Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:38.914194Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:38.914312Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:38.919887Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:38.920642Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:38.920797Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:38.920932Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:38.921103Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.921793Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.921959Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.922089Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.922166Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.922302Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.922595Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.922973Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.923272Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.923559Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.923687Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.925190Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.925583Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.925649Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:38.925929Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.926112Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.926229Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.926292Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.926404Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.926469Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.926664Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.926731Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.926843Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.926910Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.927018Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.927080Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.927261Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.927451Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.927841Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.928096Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.928212Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.928304Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.928416Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.928476Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.928587Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.928668Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.928787Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.928873Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.928988Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.929056Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.929329Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.929639Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.929759Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.929858Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.930474Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.930538Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.930657Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.930886Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.931306Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.931373Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.931485Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.931547Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.931659Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.931723Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.931840Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.931903Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.932017Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.932081Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.932187Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.932288Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.932553Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.932974Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.933110Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.933174Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.933281Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.933348Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.947909Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.948268Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.948408Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.949015Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.949094Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.949180Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.949247Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.949360Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.949431Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:38.950551Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:38.954313Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.954870Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.956261Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.956753Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.957117Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:38.957455Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.958209Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.958870Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.960640Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.961786Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T04:54:38.962138Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.966051Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T04:54:38.968369Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:38.970397Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T04:54:38.973242Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T04:54:38.974532Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T04:54:38.975441Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T04:54:39.077900Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.077967Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.078652Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.079027Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.082682Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T04:54:39.083223Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T04:54:39.143171Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.143920Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.146762Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T04:54:39.408416Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.409267Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.412311Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:40.125171Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.125968Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.128928Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T04:54:40.190188Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.190277Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.190972Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.191445Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.194065Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T04:54:40.195257Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T04:54:40.256460Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.256528Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.256558Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.257408Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.257670Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.257986Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.262138Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T04:54:40.263388Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T04:54:40.264133Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T04:54:40.524082Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.525001Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.528141Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T04:54:40.589199Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.589990Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.593318Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:40.654304Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.655145Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.657924Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:40.662870Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.663577Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.666092Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:40.695624Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.696467Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.698387Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.699173Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.699365Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:40.709519Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:40.863607Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.864340Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.867457Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:40.928513Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.929539Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.932663Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T04:54:41.295022Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.296103Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.299577Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T04:54:41.360793Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.360910Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.361967Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.362349Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.366154Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T04:54:41.367077Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T04:54:41.778043Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.778826Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.782634Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:41.787147Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.787845Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.790869Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T04:54:41.820078Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.821077Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.824477Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T04:54:41.985713Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.986943Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.990104Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T04:54:42.051413Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.052434Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.055763Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T04:54:42.116822Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.117714Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.121505Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:42.182287Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.183049Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.186386Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T04:54:42.398282Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.398999Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.402120Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T04:54:42.463466Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.464268Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.467700Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T04:54:42.629196Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.630297Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.633345Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T04:54:42.662727Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.662834Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.663499Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.663813Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.667214Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T04:54:42.669318Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T04:54:42.698673Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.698763Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.699318Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.699543Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.702648Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:42.703922Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T04:54:42.764130Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.764237Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.764901Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.765502Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.769109Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T04:54:42.769887Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T04:54:43.132372Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.133094Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.136352Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T04:54:43.197483Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.198190Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.201693Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T04:54:43.262499Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.263177Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.266511Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T04:54:43.578271Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.579058Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.582548Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T04:54:43.643688Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.644528Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.647872Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T04:54:43.708773Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.709567Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.712877Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T04:54:43.725859Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.726998Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.730503Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T04:54:43.743338Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.744139Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.747660Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T04:54:43.776500Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.777190Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.780040Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T04:54:43.781055Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.781831Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.785129Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T04:54:43.798072Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.799026Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.802110Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T04:54:43.815019Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.815706Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.818723Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T04:54:43.848282Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.848879Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.851871Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T04:54:43.852569Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.853046Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.855628Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T04:54:43.885208Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.886050Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.201127Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.201667Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.205058Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T04:54:44.217745Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.218256Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.221112Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T04:54:44.250200Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.266067Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.781528Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.782088Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.785253Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:44.846376Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.311799Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.312281Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.315377Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T04:54:45.376959Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.541459Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.541971Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.544607Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T04:54:45.606115Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.720522Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.721000Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.723653Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T04:54:45.752864Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.753151Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.753305Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.753610Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.753909Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.757871Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:45.759431Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:45.760236Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:45.786402Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.786468Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.786491Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.786695Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.786993Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.789883Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:45.790757Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:45.819114Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.819500Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.819677Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.822334Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:45.851548Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.475040Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:57.802017Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:57.802017Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] 
[2026-05-27T04:54:57.802017Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:57.802074Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] 
[2026-05-27T04:54:57.802082Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:57.802088Z] [nf-d13bfaae5a4c68876cd3c9028b496ce6-e6499-2pgn4] [604_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec