File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/e54dd20502a6767d9287dcb1275c71/.command.err
Size
62.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr19_15162349-15162662.bed)
Attempt

Content

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[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXyCjMTt/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXyCjMTt/chr19_15162349-15162662.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXyCjMTt/chr19_15162349-15162662.bed.gz.tbi
[2026-05-27T04:54:30.567865Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:30.572834Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:30.572869Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:30.572876Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:30.572880Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXyCjMTt'
[2026-05-27T04:54:30.572884Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:30.572890Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:30.572893Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:30.572897Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:30.572901Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:30.572904Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:30.572908Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:30.572912Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:30.572916Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:30.573810Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:30.573903Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:30.579762Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:30.580482Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:30.580749Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:30.580944Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:30.581354Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.581739Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.581830Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.581900Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.582020Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.582086Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.582201Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.582265Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.582378Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.582501Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.583067Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.583200Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.583281Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.583601Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.584076Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.585855Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.586281Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.587007Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:30.587080Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.587269Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.587668Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.587739Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.587853Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.587920Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.588033Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.588095Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.588208Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.588270Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.588379Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.588443Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.588599Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.588788Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.589184Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.589250Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.589405Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.589479Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.589645Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.589710Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.589824Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.589887Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.590001Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.590071Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.590296Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.590671Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.591308Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.591372Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.591484Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.591547Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.591814Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.592210Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.592329Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.592396Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.592508Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.592738Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.592858Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.592921Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.593034Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.593099Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.593274Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.593752Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.593863Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.593922Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.594031Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.594094Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.594200Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.594266Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.610928Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.611343Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.611421Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.611585Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.611659Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.611746Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.611815Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.611932Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.613206Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:30.613540Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:30.613852Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.614606Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.615106Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.615751Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.616570Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.617225Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.618196Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.619597Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.621096Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.624478Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T04:54:30.626500Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:30.631035Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T04:54:30.635009Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T04:54:30.637490Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T04:54:30.637820Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:30.640648Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T04:54:30.641559Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:30.701794Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.702425Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.706035Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T04:54:30.718588Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.719521Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.722013Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T04:54:31.485704Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.485820Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.486619Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.486903Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.490254Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0007] Task initiated on local node
[2026-05-27T04:54:31.491258Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T04:54:31.551580Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.553009Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.556773Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T04:54:31.617979Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.618932Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.622388Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T04:54:31.635336Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.636233Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.639387Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T04:54:32.151965Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.152849Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.156354Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T04:54:32.318097Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.319031Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.322514Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0003] Task initiated on local node
[2026-05-27T04:54:32.383577Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.384555Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.387848Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0003] Task initiated on local node
[2026-05-27T04:54:32.449097Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.450171Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.453813Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0019] Task initiated on local node
[2026-05-27T04:54:32.514980Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.515114Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.515955Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.516463Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.520293Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0006] Task initiated on local node
[2026-05-27T04:54:32.521399Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T04:54:32.581236Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.582177Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.585518Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:32.646796Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.647800Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.651422Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T04:54:32.913383Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.914247Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.918578Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:32.980569Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.982122Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.985926Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T04:54:33.598949Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.600002Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.603393Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0011] Task initiated on local node
[2026-05-27T04:54:33.665226Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.666195Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.670072Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T04:54:33.831521Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.832334Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.835981Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0009] Task initiated on local node
[2026-05-27T04:54:33.897281Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.898258Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.901776Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T04:54:34.113440Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.113554Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.114560Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.114924Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.118313Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0005] Task initiated on local node
[2026-05-27T04:54:34.119808Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0000] Task initiated on local node
[2026-05-27T04:54:34.179447Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.179550Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.180398Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.180779Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.184829Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:34.186045Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:34.447119Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.447996Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.451499Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0001] Task initiated on local node
[2026-05-27T04:54:34.512687Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.513690Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.517407Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T04:54:34.728619Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.729602Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.733327Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0018] Task initiated on local node
[2026-05-27T04:54:34.794316Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.795165Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.798621Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T04:54:34.803455Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.804079Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.807305Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:34.968759Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.969597Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.972783Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0014] Task initiated on local node
[2026-05-27T04:54:35.034181Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.034904Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.038030Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0016] Task initiated on local node
[2026-05-27T04:54:35.098968Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.099746Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.102523Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:35.164125Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.164854Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.167930Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T04:54:35.831608Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.832750Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.835854Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0001] Task initiated on local node
[2026-05-27T04:54:35.897136Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.898143Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.901798Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0005] Task initiated on local node
[2026-05-27T04:54:35.962964Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.964024Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.968031Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T04:54:36.279876Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.280000Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.280835Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.281353Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.284683Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0012] Task initiated on local node
[2026-05-27T04:54:36.285867Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T04:54:36.345857Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.345992Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.346885Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.347310Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.350140Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0013] Task initiated on local node
[2026-05-27T04:54:36.351357Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:36.363426Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.364270Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.367149Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T04:54:36.396350Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.397111Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.400017Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0004] Task initiated on local node
[2026-05-27T04:54:36.400935Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.401687Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.404475Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0000] Task initiated on local node
[2026-05-27T04:54:36.433819Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.434660Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.437788Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T04:54:36.450884Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.451639Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.454263Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0002] Task initiated on local node
[2026-05-27T04:54:36.515946Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.516060Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.516849Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.517286Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.520919Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T04:54:36.521983Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T04:54:36.732435Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.733488Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.736736Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0020] Task initiated on local node
[2026-05-27T04:54:36.798051Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.798783Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.802187Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_019_chr20_0002] Task initiated on local node
[2026-05-27T04:54:36.863417Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_019_chr20_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.879627Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.880322Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.883706Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:36.912870Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.228043Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.228848Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.231983Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0017] Task initiated on local node
[2026-05-27T04:54:37.293461Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.508479Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.509236Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.512038Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0010] Task initiated on local node
[2026-05-27T04:54:37.573445Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.637739Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.638397Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.641245Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0015] Task initiated on local node
[2026-05-27T04:54:37.702589Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.967561Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.968058Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.970751Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0004] Task initiated on local node
[2026-05-27T04:54:38.000350Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.115105Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.115566Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.118116Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_001_chr2_0008] Task initiated on local node
[2026-05-27T04:54:38.180195Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_001_chr2_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.645528Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.646012Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.648718Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:38.678155Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.678422Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.678577Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.678962Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.679507Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.683002Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:38.684284Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:38.685246Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:38.712944Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.713018Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.713041Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.713258Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.713546Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.716228Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:38.717146Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:38.745736Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.745813Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.746019Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.748507Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:38.777967Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.198211Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:49.461725Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:49.461725Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] 
[2026-05-27T04:54:49.461725Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:49.461790Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] 
[2026-05-27T04:54:49.461797Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:49.461803Z] [nf-44e54dd20502a6767d9287dcb1275c71-34dd0-xvl2q] [646_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec