Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/c0245ecb359325a9a7b51ebaedf239/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/437b16a58db11579974e1de1943fd7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/437b16a58db11579974e1de1943fd7/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-qzse8pvs because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:58:52,786 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:58:53,592 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:58:53,762 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:58:54,701 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:58:54,875 - cnv_pipe.batch.run_model - INFO - Processing cluster 942 with 171 probes
2026-05-27 04:58:55,242 - cnv_pipe.batch.run_model.cluster942 - INFO - Child process started for cluster 942 with 171 probes
2026-05-27 04:59:47,243 - cnv_pipe.batch.run_model.cluster942 - INFO - Child process finished cluster 942. Wrote cluster_942_samples.csv and cluster_942_params.csv
2026-05-27 04:59:47,244 - cnv_pipe.batch.run_model - INFO - Cluster 942 finished in 52.37 seconds. Status: SUCCESS