cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i Sig_18_Blood.md.bam --read_filter QualCalFilter,table=Sig_18_Blood.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz Sig_18_Blood.table.post --algo ReadWriter Sig_18_Blood.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 0.2s, est remaining 4.6s, peak mem 325MB, user 0.3s, sys 6.4s, output queue size 1
progress 10% @chr2:71000001, elapsed 0.4s, est remaining 4.0s, peak mem 560MB, user 0.6s, sys 12.6s, output queue size 2
progress 15% @chr2:235000001, elapsed 0.7s, est remaining 3.7s, peak mem 622MB, user 0.9s, sys 18.5s, output queue size 2
progress 20% @chr3:136000001, elapsed 0.9s, est remaining 3.4s, peak mem 760MB, user 1.1s, sys 24.5s, output queue size 17
progress 25% @chr4:113000001, elapsed 1.1s, est remaining 3.2s, peak mem 859MB, user 1.4s, sys 30.4s, output queue size 4
progress 30% @chr5:85000001, elapsed 1.3s, est remaining 2.9s, peak mem 925MB, user 1.6s, sys 36.3s, output queue size 1
progress 35% @chr6:64000001, elapsed 1.4s, est remaining 2.7s, peak mem 967MB, user 1.8s, sys 42.1s, output queue size 3
progress 40% @chr7:48000001, elapsed 1.6s, est remaining 2.5s, peak mem 1027MB, user 2.0s, sys 47.9s, output queue size 7
progress 45% @chr8:57000001, elapsed 1.8s, est remaining 2.2s, peak mem 1100MB, user 2.2s, sys 53.6s, output queue size 1
progress 50% @chr9:70000001, elapsed 2.0s, est remaining 2.0s, peak mem 1205MB, user 2.4s, sys 59.4s, output queue size 3
progress 55% @chr10:92000001, elapsed 2.2s, est remaining 1.8s, peak mem 1283MB, user 2.5s, sys 65.1s, output queue size 3
progress 60% @chr11:125000001, elapsed 2.4s, est remaining 1.6s, peak mem 1351MB, user 2.8s, sys 70.7s, output queue size 3
progress 65% @chr13:12000001, elapsed 2.6s, est remaining 1.4s, peak mem 1433MB, user 3.0s, sys 76.3s, output queue size 3
progress 70% @chr14:58000001, elapsed 2.8s, est remaining 1.2s, peak mem 1483MB, user 3.2s, sys 81.7s, output queue size 6
progress 75% @chr16:11000001, elapsed 3.0s, est remaining 1.0s, peak mem 1538MB, user 3.5s, sys 87.2s, output queue size 2
progress 80% @chr17:80000001, elapsed 3.1s, est remaining 0.8s, peak mem 1573MB, user 3.7s, sys 92.7s, output queue size 6
progress 85% @chr20:21000001, elapsed 3.3s, est remaining 0.6s, peak mem 1655MB, user 3.9s, sys 98.2s, output queue size 1
progress 90% @chrX:42000001, elapsed 3.7s, est remaining 0.4s, peak mem 2794MB, user 7.2s, sys 100.4s, output queue size 114
progress 95% @chrY:36000001, elapsed 3.9s, est remaining 0.2s, peak mem 2821MB, user 10.4s, sys 102.2s, output queue size 276
progress 100% @chr21:41000001, elapsed 6.1s, est remaining 0.0s, peak mem 2834MB, user 22.0s, sys 104.2s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 52293961
output file size: 74732894
reads: 1001133
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.000 sys 0.024 real
ReadQualCal::delayed_init: 1 calls 0.001 user 0.000 sys 0.024 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.006 real
advance: 3219322 calls 1.626 user 12.220 sys 14.926 real
done: 1 calls 0.309 user 0.178 sys 0.490 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.002 user 0.000 sys 6.103 real
fetch: 3219322 calls 0.249 user 12.852 sys 13.051 real
fetch_reads: 3219322 calls 0.442 user 12.967 sys 13.164 real
fetch_ref: 13318 calls 0.048 user 0.029 sys 0.057 real
fetch_vcf: 13318 calls 1.345 user 0.105 sys 1.411 real
idle: 1945 calls 1.116 user 0.327 sys 88.055 real
init: 1 calls 0.006 user 0.000 sys 0.030 real
update: 13537 calls 6.558 user 0.869 sys 8.106 real
write: 3219322 calls 8.792 user 12.836 sys 21.988 real
overall: 2972364800 mem 26.411 user 105.264 sys 7.439 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before Sig_18_Blood.table --after Sig_18_Blood.table.post Sig_18_Blood.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.003 user 0.017 sys 0.027 real
done: 1 calls 0.031 user 0.019 sys 0.057 real
idle: 61 calls 0.002 user 0.000 sys 31.329 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 82034688 mem 0.069 user 0.039 sys 1.056 real