Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/c0245ecb359325a9a7b51ebaedf239/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/0ff6c04a615e5c6f209bc37ad07ed2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/71/0ff6c04a615e5c6f209bc37ad07ed2/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-3x7h5sta because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:58:50,423 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:58:51,217 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:58:51,387 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:58:52,325 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:58:52,503 - cnv_pipe.batch.run_model - INFO - Processing cluster 927 with 124 probes
2026-05-27 04:58:52,877 - cnv_pipe.batch.run_model.cluster927 - INFO - Child process started for cluster 927 with 124 probes
2026-05-27 04:59:31,873 - cnv_pipe.batch.run_model.cluster927 - INFO - Child process finished cluster 927. Wrote cluster_927_samples.csv and cluster_927_params.csv
2026-05-27 04:59:31,874 - cnv_pipe.batch.run_model - INFO - Cluster 927 finished in 39.37 seconds. Status: SUCCESS