File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e6/6d7422987727249352858521a4eaf5/.command.err
Size
63.3 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr1_68991-70108.bed)
Attempt

Content

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[2026-05-27T04:54:31.298594Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:31.300400Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:31.300452Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:31.300458Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:31.300464Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXAqZ2Os'
[2026-05-27T04:54:31.300469Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:31.300476Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:31.300482Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:31.300486Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:31.300490Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:31.300495Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:31.300499Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:31.300505Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:31.300509Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:31.301466Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:31.301533Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:31.307731Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:31.308403Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:31.308505Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:31.308761Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:31.309009Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309350Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309462Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309536Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309655Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309722Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309839Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309902Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.310019Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.310089Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.310561Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.310757Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.311155Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.311893Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313617Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313946Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:31.314412Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.314521Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.314854Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315121Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315328Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315400Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315515Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315583Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315694Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315757Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315877Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.315940Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316050Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316166Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316412Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316717Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316845Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316912Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317023Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317085Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317199Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317264Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317374Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317442Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317595Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317657Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.317870Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318225Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318664Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318727Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318841Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.318956Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319078Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319147Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319288Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319363Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.319761Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320152Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320274Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320336Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320467Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320534Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320665Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320735Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320851Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.320912Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321022Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321118Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321292Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321407Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.321737Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.322188Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.338326Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.338636Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.338822Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.339015Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.339422Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.340220Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.340423Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.340541Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342460Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.342760Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343135Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.343831Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.344420Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.344915Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.345139Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.346009Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.347536Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:31.348857Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:31.349478Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.350068Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.355638Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:31.359950Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:31.363320Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T04:54:31.365778Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T04:54:31.366395Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:31.369613Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T04:54:31.483396Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.484605Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.485160Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.485278Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.486567Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.489196Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T04:54:31.489570Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.492968Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T04:54:31.494259Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T04:54:32.357875Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.359732Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.363259Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:32.474823Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.475947Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.479528Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T04:54:33.593721Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.594915Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.598418Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T04:54:34.411484Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.412474Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.415358Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T04:54:34.677491Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.678444Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.681821Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:34.793128Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.794907Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.798316Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:34.859713Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.859887Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.861306Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.861861Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.865035Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:34.866157Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:34.976567Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.978201Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.981820Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:35.043008Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.044036Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.047016Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0000] Task initiated on local node
[2026-05-27T04:54:35.108614Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.109815Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.112882Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T04:54:35.316152Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T04:54:35.324890Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.325838Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.328764Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0014] Task initiated on local node
[2026-05-27T04:54:35.341984Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.342949Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.346189Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0009] Task initiated on local node
[2026-05-27T04:54:35.375284Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.376312Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.381200Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.382100Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.382278Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0018] Task initiated on local node
[2026-05-27T04:54:35.385047Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:35.446676Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0018' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.446802Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.447907Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.448307Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.451798Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:35.453841Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0011] Task initiated on local node
[2026-05-27T04:54:35.513080Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.513177Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.513992Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.514290Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.517952Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T04:54:35.519101Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:35.880109Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.881019Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.884490Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T04:54:36.046124Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.046936Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.049909Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:36.079055Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.079974Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.083108Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:36.083672Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.084208Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.086581Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:36.148701Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.148842Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.149723Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.150298Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.153646Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0017] Task initiated on local node
[2026-05-27T04:54:36.154432Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T04:54:36.214882Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0017' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.215664Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.219131Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:36.330552Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.331291Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.335135Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:36.396242Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.397045Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.399963Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T04:54:36.461451Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.462207Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.464861Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0016] Task initiated on local node
[2026-05-27T04:54:36.526587Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0016' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.527371Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.530586Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:36.592261Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.592998Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.595982Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T04:54:36.908171Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.908934Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.911839Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T04:54:36.941141Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.941924Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:36.944803Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0003] Task initiated on local node
[2026-05-27T04:54:37.006207Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.007036Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.010374Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:37.473043Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.473800Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.476634Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:37.505978Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.506693Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.509907Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0019] Task initiated on local node
[2026-05-27T04:54:37.570915Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0019' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.571597Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.574810Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0010] Task initiated on local node
[2026-05-27T04:54:37.637071Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.637747Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.641000Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T04:54:37.752773Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.753433Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.756212Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0002] Task initiated on local node
[2026-05-27T04:54:37.785463Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.786122Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.788877Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0001] Task initiated on local node
[2026-05-27T04:54:37.818088Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.818755Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.821715Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:37.850953Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.851604Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.854916Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0007] Task initiated on local node
[2026-05-27T04:54:37.915911Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.916566Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.919183Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0005] Task initiated on local node
[2026-05-27T04:54:37.980827Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.980902Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.981392Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.981691Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.984615Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0006] Task initiated on local node
[2026-05-27T04:54:37.985765Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T04:54:38.014040Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.014123Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.014653Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.015088Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.018262Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T04:54:38.019541Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:38.049016Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.049654Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.052216Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0015] Task initiated on local node
[2026-05-27T04:54:38.081721Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.082234Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.084726Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:38.114204Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.228750Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.229367Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.232125Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0020] Task initiated on local node
[2026-05-27T04:54:38.261620Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0020' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.576603Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.577162Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.579961Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0012] Task initiated on local node
[2026-05-27T04:54:38.609107Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.924144Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.924226Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.924686Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.925246Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.927682Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:38.928876Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0008] Task initiated on local node
[2026-05-27T04:54:38.957581Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.957653Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.272182Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.272604Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.275031Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0004] Task initiated on local node
[2026-05-27T04:54:39.304577Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.305053Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.307324Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:39.308527Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:39.340517Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.056041Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.056481Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.058578Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_000_chr1_0013] Task initiated on local node
[2026-05-27T04:54:40.088354Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_000_chr1_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.088599Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.088744Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.088985Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.089673Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.092650Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:40.093745Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:40.094382Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:40.121939Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.121997Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.122019Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.122203Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.122482Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.124934Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:40.125562Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:40.154757Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.154821Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.155000Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.157196Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:40.186950Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.904536Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:50.189893Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:50.189893Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] 
[2026-05-27T04:54:50.189893Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:50.189975Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] 
[2026-05-27T04:54:50.189985Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:50.189991Z] [nf-e66d7422987727249352858521a4eaf5-4306d-fnlxr] [653_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec