Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/c0245ecb359325a9a7b51ebaedf239/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/6c8e54cdb3c091f924f484dd1f425e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/6c8e54cdb3c091f924f484dd1f425e/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-5xa9kz02 because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:59:14,558 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:59:15,363 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:59:15,535 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:59:16,535 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:59:16,713 - cnv_pipe.batch.run_model - INFO - Processing cluster 899 with 108 probes
2026-05-27 04:59:17,101 - cnv_pipe.batch.run_model.cluster899 - INFO - Child process started for cluster 899 with 108 probes
2026-05-27 04:59:52,912 - cnv_pipe.batch.run_model.cluster899 - INFO - Child process finished cluster 899. Wrote cluster_899_samples.csv and cluster_899_params.csv
2026-05-27 04:59:52,913 - cnv_pipe.batch.run_model - INFO - Cluster 899 finished in 36.20 seconds. Status: SUCCESS