File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/39eeb50417b690e0b612ec1b09703f/.command.log
Size
69.9 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_2;chr10_74133927-74134264.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/39eeb50417b690e0b612ec1b09703f/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr10_74133927-74134264.bed.gz.tbi
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/d5818a83b9029a4eaca1107ae554f8/Sig_18_tissue.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bd/d5818a83b9029a4eaca1107ae554f8/Sig_18_tissue.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/39eeb50417b690e0b612ec1b09703f/.command.run
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T04:54:22.812145Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:22.818546Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:22.818582Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:22.818590Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:22.818595Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXX6IvFB9'
[2026-05-27T04:54:22.818604Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:22.818610Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:22.818615Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:22.818619Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:22.818623Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:22.818628Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:22.818632Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:22.818636Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:22.818640Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:22.819456Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:22.819579Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:22.825673Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:22.826392Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:22.826973Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:22.827344Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:22.827606Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.828285Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.828381Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.828455Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.828577Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.828682Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.829104Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.829238Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.829328Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.829466Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.829761Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830296Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.830455Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.831869Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832191Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.832428Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:22.832938Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833131Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833455Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833520Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833730Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833798Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833911Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.833979Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834090Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834152Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834272Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834337Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834594Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.834911Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835027Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835141Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835256Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835319Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835427Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835490Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835603Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835667Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835774Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.835837Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836007Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836374Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836489Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836554Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836680Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836748Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.836929Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837043Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837159Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837224Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837336Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837418Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.837698Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838144Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838255Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838317Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838426Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838489Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838595Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838658Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838774Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838834Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.838947Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.839009Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.839116Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.839192Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.839439Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.839933Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.840046Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.840110Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.840219Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.840281Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.840387Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.840449Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.857143Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.857621Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.857701Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.857828Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.858691Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.858754Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.858927Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.859171Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.859466Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.859701Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.860353Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.861199Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.862117Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.862765Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.863249Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.863917Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.864453Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:22.864784Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:22.865398Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:22.869842Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:22.873022Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T04:54:22.876704Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:22.882576Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T04:54:22.885459Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T04:54:22.885992Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:22.888125Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T04:54:22.888602Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T04:54:23.002253Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.003233Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.006313Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T04:54:23.568775Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.569771Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.572767Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T04:54:23.684074Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.685285Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.688534Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T04:54:23.849677Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.850661Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.853782Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0003] Task initiated on local node
[2026-05-27T04:54:23.914737Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.914823Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.915714Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.916038Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.919120Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0010] Task initiated on local node
[2026-05-27T04:54:23.920760Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T04:54:23.948486Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.949285Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:23.952106Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T04:54:24.063503Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.064416Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.067425Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T04:54:24.229029Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.229929Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.232918Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0002] Task initiated on local node
[2026-05-27T04:54:24.294149Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.295096Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.297815Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0007] Task initiated on local node
[2026-05-27T04:54:24.327233Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.328157Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.331411Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:24.392581Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.392692Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.393436Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.393749Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.397382Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0009] Task initiated on local node
[2026-05-27T04:54:24.397858Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T04:54:24.458455Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.459408Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.463064Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0006] Task initiated on local node
[2026-05-27T04:54:24.523889Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.524788Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.528181Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:24.557192Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.557964Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.560727Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0005] Task initiated on local node
[2026-05-27T04:54:24.573913Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.574947Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.577794Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T04:54:24.607063Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.608053Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.610874Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T04:54:24.973178Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.974072Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:24.976993Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0004] Task initiated on local node
[2026-05-27T04:54:25.038279Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.039251Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.042426Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T04:54:25.304230Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.305327Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.309426Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0009] Task initiated on local node
[2026-05-27T04:54:25.370716Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.371570Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.375247Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:25.436336Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.437270Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.440093Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0002] Task initiated on local node
[2026-05-27T04:54:25.501471Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.502383Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.505432Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:25.616898Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.617664Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.620647Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:25.681886Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.682692Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.685787Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:25.747034Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.747817Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:25.751091Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T04:54:26.113444Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.114246Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.117268Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:26.178797Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.178903Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.179609Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.180249Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.183467Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0011] Task initiated on local node
[2026-05-27T04:54:26.184382Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T04:54:26.244887Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.245720Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.248481Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0001] Task initiated on local node
[2026-05-27T04:54:26.310083Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.310900Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.314340Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T04:54:26.425631Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.426470Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.429767Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:26.490798Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.490910Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.491805Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.492123Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.495510Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T04:54:26.496672Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T04:54:26.656998Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.657761Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.660773Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0007] Task initiated on local node
[2026-05-27T04:54:26.722068Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.722925Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.726212Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T04:54:26.938146Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.938931Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.941654Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0002] Task initiated on local node
[2026-05-27T04:54:26.971404Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.972121Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:26.974950Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:27.036319Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.037085Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.039735Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0000] Task initiated on local node
[2026-05-27T04:54:27.101237Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.102068Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.105163Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0001] Task initiated on local node
[2026-05-27T04:54:27.166443Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.167273Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.170379Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0003] Task initiated on local node
[2026-05-27T04:54:27.231857Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.232670Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.236176Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0005] Task initiated on local node
[2026-05-27T04:54:27.296972Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.297666Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.301007Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T04:54:27.412470Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.413166Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.416567Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0006] Task initiated on local node
[2026-05-27T04:54:27.478055Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.478777Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.481660Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0009] Task initiated on local node
[2026-05-27T04:54:27.510774Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.511473Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.515200Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T04:54:27.519559Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.520108Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.523237Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0011] Task initiated on local node
[2026-05-27T04:54:27.553208Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.553912Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.557009Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0003] Task initiated on local node
[2026-05-27T04:54:27.618254Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.618859Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.622034Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0008] Task initiated on local node
[2026-05-27T04:54:27.683173Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.683886Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.686855Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0008] Task initiated on local node
[2026-05-27T04:54:27.748124Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.748772Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.751921Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T04:54:27.913361Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.914023Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.917632Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0001] Task initiated on local node
[2026-05-27T04:54:27.978645Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.979351Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:27.982411Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0011] Task initiated on local node
[2026-05-27T04:54:28.011583Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.012229Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.015910Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0004] Task initiated on local node
[2026-05-27T04:54:28.076984Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.077618Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.080889Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:28.141755Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.141845Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.142445Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.142710Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.145846Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0004] Task initiated on local node
[2026-05-27T04:54:28.147294Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0000] Task initiated on local node
[2026-05-27T04:54:28.175128Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.175764Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.178527Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0008] Task initiated on local node
[2026-05-27T04:54:28.179340Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.211461Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.275674Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.275748Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.276264Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.276549Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.279750Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0010] Task initiated on local node
[2026-05-27T04:54:28.280872Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_009_chr10_0010] Task initiated on local node
[2026-05-27T04:54:28.340786Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.340876Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_009_chr10_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.755986Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.756549Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.759309Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0007] Task initiated on local node
[2026-05-27T04:54:28.821106Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.486738Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.487200Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.489990Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0005] Task initiated on local node
[2026-05-27T04:54:29.551452Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.967523Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.968036Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.970794Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_011_chr12_0000] Task initiated on local node
[2026-05-27T04:54:30.032243Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_011_chr12_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.497956Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.498598Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.501653Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_010_chr11_0006] Task initiated on local node
[2026-05-27T04:54:30.562785Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_010_chr11_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.563164Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.563358Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.563692Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.563928Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.568022Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:30.569538Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:30.570369Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:30.597158Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.597250Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.597890Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.598272Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.600267Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.601867Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:30.602876Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:30.632584Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.632676Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.632924Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.635846Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:30.696953Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.416267Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:41.707191Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:41.707191Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] 
[2026-05-27T04:54:41.707191Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:41.707252Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] 
[2026-05-27T04:54:41.707265Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:41.707272Z] [nf-9e39eeb50417b690e0b612ec1b09703f-06c70-69m86] [598_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec