cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -r Homo_sapiens_assembly38.fasta --algo TNfilter --tumor_sample Sig_18_Blood --normal_sample reference-NA12878 --max_event_count 5 -v negative_somatic_control_2.tnseq.vcf.gz --contamination negative_somatic_control_2.tnseq.contamination_data.tsv --tumor_segments negative_somatic_control_2.tnseq.segments --orientation_priors negative_somatic_control_2.tnseq.orientation_data.tsv negative_somatic_control_2.tnseq.filtered.vcf.gz
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:214000001, elapsed 0.0s, est remaining 0.8s, peak mem 415MB, user 0.3s, sys 0.9s, output queue size 158
progress 10% @chr2:114000001, elapsed 0.1s, est remaining 0.7s, peak mem 415MB, user 0.6s, sys 2.8s, output queue size 319
progress 15% @chr3:8000001, elapsed 0.1s, est remaining 0.7s, peak mem 415MB, user 0.8s, sys 5.9s, output queue size 450
progress 20% @chr4:6000001, elapsed 0.1s, est remaining 0.6s, peak mem 415MB, user 1.0s, sys 9.3s, output queue size 607
progress 25% @chr4:13000001, elapsed 0.2s, est remaining 0.6s, peak mem 417MB, user 1.3s, sys 13.1s, output queue size 752
progress 30% @chr5:61000001, elapsed 0.2s, est remaining 0.5s, peak mem 417MB, user 1.6s, sys 18.6s, output queue size 894
progress 35% @chr6:77000001, elapsed 0.3s, est remaining 0.5s, peak mem 417MB, user 1.9s, sys 23.0s, output queue size 341
progress 40% @chr6:136000001, elapsed 0.3s, est remaining 0.4s, peak mem 417MB, user 2.2s, sys 26.6s, output queue size 503
progress 45% @chr7:14000001, elapsed 0.3s, est remaining 0.4s, peak mem 417MB, user 2.4s, sys 30.2s, output queue size 665
progress 50% @chr9:94000001, elapsed 0.4s, est remaining 0.4s, peak mem 417MB, user 2.6s, sys 34.5s, output queue size 826
progress 55% @chr10:68000001, elapsed 0.4s, est remaining 0.3s, peak mem 417MB, user 2.9s, sys 39.9s, output queue size 987
progress 60% @chr11:127000001, elapsed 0.4s, est remaining 0.3s, peak mem 417MB, user 3.2s, sys 44.8s, output queue size 1149
progress 65% @chr13:29000001, elapsed 0.5s, est remaining 0.3s, peak mem 417MB, user 3.7s, sys 49.5s, output queue size 1311
progress 70% @chr14:84000001, elapsed 0.5s, est remaining 0.2s, peak mem 417MB, user 4.2s, sys 54.3s, output queue size 1473
progress 75% @chr16:36000001, elapsed 0.5s, est remaining 0.2s, peak mem 417MB, user 4.6s, sys 59.3s, output queue size 1635
progress 80% @chr17:68000001, elapsed 0.6s, est remaining 0.1s, peak mem 417MB, user 4.9s, sys 64.4s, output queue size 1796
progress 85% @chr20:13000001, elapsed 0.6s, est remaining 0.1s, peak mem 417MB, user 5.3s, sys 69.3s, output queue size 1959
progress 90% @chr22:5000001, elapsed 0.6s, est remaining 0.1s, peak mem 417MB, user 5.7s, sys 74.0s, output queue size 2121
progress 95% @chrY:3000001, elapsed 0.7s, est remaining 0.0s, peak mem 417MB, user 6.1s, sys 78.6s, output queue size 2447
progress 100% @HLA-C*07:02:06:1, elapsed 0.8s, est remaining 0.0s, peak mem 417MB, user 6.5s, sys 87.2s, output queue size 5706
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
signature: 000a06d1
features: 1f8bfbff fffab20b
extended: f1bf27eb 1b407f7e
amd bits: 2c100800 00000121
brand: Intel(R) Xeon(R) 6975P-C
threads: 192 max 192
algo: TNfilter
license: sentieon:TNhaplotyper=192
input file size: 51112
output file size: 43434
reads: 0
contig: 3367 intervals 3217346917 bases
"learn_filter": 513 calls 0.001 user 0.000 sys 0.011 real
"predict_filter": 171 calls 0.050 user 0.004 sys 0.104 real
advance: 3219322 calls 0.832 user 36.591 sys 42.283 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
execute: 1 calls 0.005 user 0.003 sys 0.948 real
fetch_ref: 460 calls 0.015 user 0.062 sys 0.320 real
idle: 20057 calls 0.870 user 1.032 sys 369.763 real
init: 1 calls 0.376 user 0.216 sys 0.873 real
overall: 437538816 mem 8.352 user 91.300 sys 2.782 real