cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i HCC1395_BL.md.bam --read_filter QualCalFilter,table=HCC1395_BL.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz HCC1395_BL.table.post --algo ReadWriter HCC1395_BL.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:163000001, elapsed 0.1s, est remaining 2.1s, peak mem 363MB, user 0.4s, sys 2.5s, output queue size 20
progress 10% @chr2:78000001, elapsed 0.2s, est remaining 1.8s, peak mem 542MB, user 0.6s, sys 4.8s, output queue size 41
progress 15% @chr2:236000001, elapsed 0.3s, est remaining 1.6s, peak mem 638MB, user 0.9s, sys 7.2s, output queue size 39
progress 20% @chr3:154000001, elapsed 0.4s, est remaining 1.4s, peak mem 740MB, user 1.2s, sys 9.5s, output queue size 12
progress 25% @chr4:117000001, elapsed 0.4s, est remaining 1.3s, peak mem 813MB, user 1.3s, sys 11.9s, output queue size 10
progress 30% @chr5:86000001, elapsed 0.5s, est remaining 1.2s, peak mem 846MB, user 1.5s, sys 14.3s, output queue size 19
progress 35% @chr6:68000001, elapsed 0.6s, est remaining 1.1s, peak mem 954MB, user 1.7s, sys 16.6s, output queue size 8
progress 40% @chr7:57000001, elapsed 0.7s, est remaining 1.0s, peak mem 1017MB, user 1.9s, sys 18.9s, output queue size 15
progress 45% @chr8:58000001, elapsed 0.8s, est remaining 1.0s, peak mem 1167MB, user 2.2s, sys 21.3s, output queue size 7
progress 50% @chr9:75000001, elapsed 0.9s, est remaining 0.9s, peak mem 1265MB, user 2.4s, sys 23.7s, output queue size 12
progress 55% @chr10:88000001, elapsed 0.9s, est remaining 0.8s, peak mem 1329MB, user 2.5s, sys 26.1s, output queue size 14
progress 60% @chr11:122000001, elapsed 1.0s, est remaining 0.7s, peak mem 1403MB, user 2.7s, sys 28.5s, output queue size 18
progress 65% @chr12:122000001, elapsed 1.1s, est remaining 0.6s, peak mem 1433MB, user 2.9s, sys 30.9s, output queue size 27
progress 70% @chr14:62000001, elapsed 1.2s, est remaining 0.5s, peak mem 1500MB, user 3.2s, sys 33.1s, output queue size 13
progress 75% @chr16:16000001, elapsed 1.3s, est remaining 0.4s, peak mem 1577MB, user 3.4s, sys 35.5s, output queue size 10
progress 80% @chr18:2000001, elapsed 1.4s, est remaining 0.3s, peak mem 1626MB, user 3.7s, sys 37.9s, output queue size 7
progress 85% @chr20:22000001, elapsed 1.4s, est remaining 0.3s, peak mem 1701MB, user 3.9s, sys 40.3s, output queue size 17
progress 90% @chrX:45000001, elapsed 1.7s, est remaining 0.2s, peak mem 2792MB, user 6.2s, sys 41.6s, output queue size 114
progress 95% @chrY:44000001, elapsed 1.8s, est remaining 0.1s, peak mem 2819MB, user 8.0s, sys 42.3s, output queue size 276
progress 100% @chr21:41000001, elapsed 3.9s, est remaining 0.0s, peak mem 2849MB, user 20.0s, sys 43.6s, output queue size 3664
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 51395954
output file size: 71637313
reads: 1001089
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.001 user 0.000 sys 0.017 real
ReadQualCal::delayed_init: 1 calls 0.001 user 0.000 sys 0.023 real
ReadQualCal::init: 1 calls 0.000 user 0.010 sys 0.006 real
advance: 3219322 calls 1.620 user 5.350 sys 6.994 real
done: 1 calls 0.307 user 0.207 sys 0.517 real
exec_no_coor: 1 calls 0.000 user 0.000 sys 0.000 real
execute: 1 calls 0.002 user 0.000 sys 3.938 real
fetch: 3219322 calls 0.311 user 5.272 sys 5.566 real
fetch_reads: 3219322 calls 0.395 user 5.081 sys 5.652 real
fetch_ref: 13103 calls 0.022 user 0.009 sys 0.049 real
fetch_vcf: 13103 calls 1.239 user 0.026 sys 1.364 real
idle: 2233 calls 1.260 user 0.259 sys 86.132 real
init: 1 calls 0.007 user 0.000 sys 0.029 real
update: 13298 calls 5.362 user 1.233 sys 7.257 real
write: 3219322 calls 7.267 user 4.728 sys 12.596 real
overall: 2989252608 mem 24.069 user 44.447 sys 5.331 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before HCC1395_BL.table --after HCC1395_BL.table.post HCC1395_BL.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.83
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.019 user 0.001 sys 0.025 real
done: 1 calls 0.031 user 0.019 sys 0.055 real
idle: 61 calls 0.003 user 0.000 sys 31.157 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 83574784 mem 0.068 user 0.034 sys 1.045 real