Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/c0245ecb359325a9a7b51ebaedf239/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/ecd9cc3500b3969afd427995b38f28/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/ecd9cc3500b3969afd427995b38f28/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-ugz346mf because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:59:05,791 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:59:06,650 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:59:06,833 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:59:08,014 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:59:08,086 - cnv_pipe.batch.run_model - INFO - Processing cluster 1019 with 112 probes
2026-05-27 04:59:08,482 - cnv_pipe.batch.run_model.cluster1019 - INFO - Child process started for cluster 1019 with 112 probes
2026-05-27 04:59:44,113 - cnv_pipe.batch.run_model.cluster1019 - INFO - Child process finished cluster 1019. Wrote cluster_1019_samples.csv and cluster_1019_params.csv
2026-05-27 04:59:44,114 - cnv_pipe.batch.run_model - INFO - Cluster 1019 finished in 36.03 seconds. Status: SUCCESS