.command.log - Workdir - DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (negative_somatic_control_2)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/d9a57479d11a3f6e3982cd8f320085/.command.log
Size: 1.0 KB
Task: DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:VCF_SOMATIC_SNV_INDEL:BCFTOOLS_CONCAT (negative_somatic_control_2)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/aafb9d06dcb4ce79b512fcfca31efe/negative_somatic_control_2.snv_indel.strelka.indel.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/da3bbbda5903f6f81dbe236515c3f6/negative_somatic_control_2.snv_indel.tnseq.snv.vcf.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/d9a57479d11a3f6e3982cd8f320085/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/d9a57479d11a3f6e3982cd8f320085/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/da3bbbda5903f6f81dbe236515c3f6/negative_somatic_control_2.snv_indel.tnseq.snv.vcf.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/aafb9d06dcb4ce79b512fcfca31efe/negative_somatic_control_2.snv_indel.strelka.indel.vcf.gz.tbi
==> STAGING COMPLETE (6 inputs)

Checking the headers and starting positions of 2 files
ls: negative_somatic_control_2.snv_indel.merged.vcf.gz.csi: No such file or directory