Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/counts_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/ploidy_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cc/c0245ecb359325a9a7b51ebaedf239/clustered_panel.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/7ad2f4ddc4c4a4c48994b5bb742c26/sample_metrics_1.parquet
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/306ccb6009c7edac2a6cb67c5ec129/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e0/306ccb6009c7edac2a6cb67c5ec129/.command.run
==> STAGING COMPLETE (6 inputs)

mkdir -p failed for path /.config/matplotlib: [Errno 13] Permission denied: '/.config'
Matplotlib created a temporary cache directory at /tmp/matplotlib-0qafp2lz because there was an issue with the default path (/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing.
2026-05-27 04:59:14,756 - cnv_pipe.batch.jax_config - INFO - Setting JAX backend to 'cpu'
2026-05-27 04:59:15,565 - cnv_pipe.batch.run_model - INFO - JAX devices = [CpuDevice(id=0)]
2026-05-27 04:59:15,740 - cnv_pipe.batch.run_model - INFO - Loading counts from counts_1.parquet
2026-05-27 04:59:16,754 - cnv_pipe.batch.run_model - INFO - Loaded data with 4 samples
2026-05-27 04:59:16,917 - cnv_pipe.batch.run_model - INFO - Processing cluster 982 with 177 probes
2026-05-27 04:59:17,306 - cnv_pipe.batch.run_model.cluster982 - INFO - Child process started for cluster 982 with 177 probes
2026-05-27 05:00:12,573 - cnv_pipe.batch.run_model.cluster982 - INFO - Child process finished cluster 982. Wrote cluster_982_samples.csv and cluster_982_params.csv
2026-05-27 05:00:12,574 - cnv_pipe.batch.run_model - INFO - Cluster 982 finished in 55.66 seconds. Status: SUCCESS