.command.log - Workdir - DAQ:FASTQ_NGSCHECKMATE:NGSCHECKMATE_FASTQ (HCC1395_tumor)

File Info

Filename: .command.log
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/5edc58765f0bcdbfd73b0a224ede2a/.command.log
Size: 896 bytes
Task: DAQ:FASTQ_NGSCHECKMATE:NGSCHECKMATE_FASTQ (HCC1395_tumor)
Attempt

Content

  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/5edc58765f0bcdbfd73b0a224ede2a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/53a21ef7857754a40ba3b72d4c5907/HCC1395_tumor_R2.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/02/5edc58765f0bcdbfd73b0a224ede2a/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/53a21ef7857754a40ba3b72d4c5907/HCC1395_tumor_R1.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/NGSCheckMate/SNP_GRCh38_hg38_wChr.pt
==> STAGING COMPLETE (5 inputs)

pe=1
started reading patternfile
finished reading patternfile
finished building count array
Number of reads in the file : 500000
Scanning fastq file..
finished reading fastq file
finished deleting hash
finished printing count array