Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/11b97f738743fe9ba937780bc7049f/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/3c4be24150a8745172b27c7cc104ed/HCC1395_BL.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/3c4be24150a8745172b27c7cc104ed/HCC1395_BL.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/11b97f738743fe9ba937780bc7049f/.command.run
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXhN5yJE/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXhN5yJE/chr4_22420786-22421189.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXhN5yJE/chr4_22420786-22421189.bed.gz.tbi
[2026-05-27T04:54:40.269930Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:40.272281Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:40.272304Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:40.272309Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:40.272314Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXhN5yJE'
[2026-05-27T04:54:40.272317Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:40.272323Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:40.272326Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:40.272330Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:40.272334Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:40.272337Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:40.272341Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:40.272345Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:40.272349Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:40.272987Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:40.273097Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:40.278933Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:40.279663Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:40.279768Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:40.280012Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:40.280232Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.280721Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.280812Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.280885Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.281005Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.281071Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.281189Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.281256Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.281640Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.281952Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.282110Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.282292Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.282382Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.283013Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.283479Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.285048Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.285722Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.286242Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:40.286411Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.286501Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.286744Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.286817Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.286936Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.287008Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.287319Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.287592Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.287856Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.288118Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.288241Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.288308Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.288416Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.288517Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.288638Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.288724Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.288846Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.288911Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.289023Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.289088Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.289239Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.289463Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.289848Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.289913Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.290026Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.290090Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.290201Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.290271Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.290383Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.290449Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.290624Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.290690Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.290805Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.291033Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.291495Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.291567Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.291676Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.291737Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.291845Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.291908Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.292014Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.292077Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.292187Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.292274Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.292392Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.292529Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.293120Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.293206Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.293325Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.293388Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.293510Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.293578Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.293691Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.293766Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.293877Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.293943Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.295322Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.295515Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.295867Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.296441Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.296742Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.297337Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.297968Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.298032Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.298175Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.298237Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.298345Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.298413Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.298523Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.298593Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.298711Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.298777Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.298898Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.299059Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.299906Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.300556Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.300944Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.301021Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.318707Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.319162Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.319300Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.319526Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.320186Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.321096Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.321422Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.321976Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.322112Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.322811Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.323333Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.323687Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.324754Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.325158Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.325825Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:40.328033Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.328248Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T04:54:40.328589Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:40.329314Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.331016Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.335332Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T04:54:40.336532Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T04:54:40.341249Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T04:54:40.342577Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T04:54:40.347257Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T04:54:40.348430Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T04:54:40.348784Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T04:54:40.462961Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.464035Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.467546Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T04:54:40.528744Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.529882Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.532481Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T04:54:40.945045Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.946292Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:40.949432Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T04:54:41.111262Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.112432Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.116073Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T04:54:41.327810Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.329047Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.332308Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T04:54:41.544257Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.545485Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.548774Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T04:54:41.660316Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.660422Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.660451Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.661614Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.661977Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.662680Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.666366Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T04:54:41.668297Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-05-27T04:54:41.669806Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T04:54:41.728037Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.729355Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.732784Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T04:54:41.894401Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.895593Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.899018Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T04:54:42.462160Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.463400Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.466845Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T04:54:42.778719Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.778817Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.778852Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.779856Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.780199Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.780355Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.784371Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-05-27T04:54:42.786010Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-05-27T04:54:42.787340Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T04:54:42.845200Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.845319Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.846384Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.847055Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.849971Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-05-27T04:54:42.852168Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T04:54:42.881584Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.882739Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.886134Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-05-27T04:54:42.915310Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.916556Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:42.919741Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T04:54:43.031311Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.031446Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.032441Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.032867Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.036404Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-05-27T04:54:43.037495Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T04:54:43.097426Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.098763Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.101695Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T04:54:43.163035Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.164210Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.167330Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-05-27T04:54:43.196713Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.197655Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.200627Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T04:54:43.261907Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.263047Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.266394Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T04:54:43.528322Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.529503Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.532435Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-05-27T04:54:43.593773Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.593896Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.595003Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.595314Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.599119Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-05-27T04:54:43.599524Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T04:54:43.628279Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.629377Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.632248Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-05-27T04:54:43.661423Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.662732Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.663028Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.665874Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.666533Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T04:54:43.669362Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-05-27T04:54:43.698583Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.699560Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.702624Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T04:54:43.864452Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.865513Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:43.868736Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T04:54:44.130601Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.131541Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.134678Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T04:54:44.246323Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.247306Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.250929Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T04:54:44.362238Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.363271Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.366511Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-05-27T04:54:44.427777Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.428809Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.432112Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T04:54:44.844628Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.845666Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.848480Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-05-27T04:54:44.853618Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.854472Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.857349Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-05-27T04:54:44.886563Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.887447Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.890588Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-05-27T04:54:44.895289Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.896116Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.899316Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-05-27T04:54:44.928219Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.929734Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.932620Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-05-27T04:54:44.933551Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.934630Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.937887Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T04:54:44.966915Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.967069Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.968266Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.968645Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:44.972085Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T04:54:44.972820Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T04:54:45.283946Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.284801Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.287801Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T04:54:45.349393Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.350596Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.353627Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-05-27T04:54:45.415137Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.416030Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.418970Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-05-27T04:54:45.448375Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.449258Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.452205Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-05-27T04:54:45.513465Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.514245Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.517359Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-05-27T04:54:45.546273Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.546348Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.547080Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.547770Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.550738Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T04:54:45.612160Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.612267Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.613051Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.613378Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.616496Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-05-27T04:54:45.645996Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-05-27T04:54:45.678519Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.678632Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.679782Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.680334Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.683655Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-05-27T04:54:45.684677Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T04:54:45.746243Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.747383Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.750852Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-05-27T04:54:45.779782Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.781118Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.781500Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.783883Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.784702Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-05-27T04:54:45.786760Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T04:54:45.848251Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.849259Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.852203Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T04:54:45.963460Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.964332Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:45.967172Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-05-27T04:54:46.028410Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.029356Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.032804Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-05-27T04:54:46.061778Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.062722Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.066018Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-05-27T04:54:46.127236Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.128222Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.131404Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T04:54:46.131994Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.132831Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.135537Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-05-27T04:54:46.164908Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.165872Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.169173Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T04:54:46.360028Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-05-27T04:54:46.380425Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.380525Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.381400Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.381798Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.384992Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-05-27T04:54:46.386233Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T04:54:46.414041Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.414923Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.417949Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T04:54:46.430811Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.431752Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.434680Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-05-27T04:54:46.463670Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.464529Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:46.467820Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T04:54:47.079896Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.079992Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.080856Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.081173Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.084305Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-05-27T04:54:47.085328Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T04:54:47.145267Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.145350Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.146083Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.146380Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.149661Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-05-27T04:54:47.150190Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-05-27T04:54:47.162322Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.163102Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.166102Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-05-27T04:54:47.170723Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.171431Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.173781Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-05-27T04:54:47.203373Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.203463Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.204196Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.204548Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.208097Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-05-27T04:54:47.209151Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T04:54:47.212507Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.213233Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.213684Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.214600Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.217511Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-05-27T04:54:47.218546Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-05-27T04:54:47.246834Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.246934Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.247693Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.250308Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-05-27T04:54:47.255372Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.287476Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.602255Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.602350Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.603017Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.603474Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.606289Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-05-27T04:54:47.607274Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-05-27T04:54:47.667742Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.667833Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.982644Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.983372Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:47.985987Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-05-27T04:54:48.015344Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:48.430298Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:48.430931Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:48.433650Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-05-27T04:54:48.462768Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.077906Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.078543Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.081003Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-05-27T04:54:49.110362Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.110754Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.110909Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.111358Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.111875Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.115808Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:49.116798Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:49.117634Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:49.143804Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.143868Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.143895Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.144111Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.144367Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.147475Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:49.147681Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:49.176317Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.176394Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.176606Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:49.178806Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:49.208368Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:50.925063Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:59.161061Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:59.161061Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] 
[2026-05-27T04:54:59.161061Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:59.161133Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] 
[2026-05-27T04:54:59.161142Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:59.161149Z] [nf-4911b97f738743fe9ba937780bc7049f-8f659-vcs68] [628_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec