File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/7c313fb29eff97706018f97958b914/.command.log
Size
61.6 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (negative_somatic_control_2;chr9_110971973-110972217.bed)
Attempt

Content

View in new tab 
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/7c313fb29eff97706018f97958b914/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/7c313fb29eff97706018f97958b914/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/b8328367b22c15bd3300ec483b8d21/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr9_110971973-110972217.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/b8328367b22c15bd3300ec483b8d21/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T04:54:31.268318Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:31.269597Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:31.269613Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:31.269618Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:31.269622Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXqV97yu'
[2026-05-27T04:54:31.269627Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:31.269632Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:31.269637Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:31.269646Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:31.269650Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:31.269657Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:31.269660Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:31.269666Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:31.269670Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:31.270174Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:31.270512Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:31.276290Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:31.277006Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:31.277232Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:31.277478Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:31.277819Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.278527Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.278649Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.278764Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.278947Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.279224Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.279654Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.279793Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.279919Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.280100Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.280538Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.282540Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.283319Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:31.283525Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.283943Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.284165Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.284286Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.284355Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.284475Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.284542Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.284759Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.284830Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.284943Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.285011Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.285121Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.285200Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.286217Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.286418Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.286530Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.286595Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.286711Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.286778Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.286902Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.286965Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.287074Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.287138Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.287246Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.287309Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.287425Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.287634Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.288048Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.288110Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.288225Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.288287Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.288394Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.288458Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.288573Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.288698Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.288826Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.288892Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.289000Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.289135Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.289419Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.289910Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.290512Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.290576Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.290689Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.290756Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.290863Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.290925Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.291037Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.291098Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.291208Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.291273Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306077Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306202Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306277Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306435Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306510Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306594Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306670Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306780Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306848Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:31.306898Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:31.308978Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.309652Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.311466Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.311890Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.312419Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313004Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.313956Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.314863Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.316085Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.322006Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T04:54:31.323262Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T04:54:31.329229Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T04:54:31.330800Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T04:54:31.331175Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T04:54:31.334028Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T04:54:31.334343Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T04:54:31.394733Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T04:54:31.432649Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.432726Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.432754Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.433526Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.433849Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.434224Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.439721Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T04:54:31.444219Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T04:54:31.650063Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.650935Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.654271Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T04:54:32.367428Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.369441Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.373316Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T04:54:32.785699Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.787022Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.790441Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-05-27T04:54:32.851910Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.853419Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.856754Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-05-27T04:54:32.918191Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.920126Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.922937Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-05-27T04:54:32.984680Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.985935Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.988996Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-05-27T04:54:33.009163Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T04:54:33.018185Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.018284Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.019507Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.020143Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.023430Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-05-27T04:54:33.024395Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.025131Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-05-27T04:54:33.026322Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.029182Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-05-27T04:54:33.058461Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.058694Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.060701Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.061212Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.061704Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.063287Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.067676Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T04:54:33.068791Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T04:54:33.070042Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T04:54:33.128067Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.129204Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.132327Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-05-27T04:54:33.193491Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.194599Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.198280Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-05-27T04:54:33.259526Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.260683Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.263889Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T04:54:33.324958Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.325948Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.329138Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T04:54:33.591225Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.592427Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.596727Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T04:54:33.757870Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.758956Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.762513Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T04:54:33.791848Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.793228Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.796724Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-05-27T04:54:33.858042Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.858169Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.859783Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.860577Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.863936Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-05-27T04:54:33.865168Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T04:54:33.925311Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.926760Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.930210Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T04:54:33.991651Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.993010Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.995934Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-05-27T04:54:34.057519Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.058821Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.062106Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T04:54:34.223775Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.224821Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.228224Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-05-27T04:54:34.289574Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.290609Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.293832Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T04:54:34.355279Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.356756Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.360291Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T04:54:34.521830Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.521925Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.522869Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.523239Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.526728Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-05-27T04:54:34.527741Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T04:54:34.587832Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.589369Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.592479Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T04:54:34.654080Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.654965Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.658079Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-05-27T04:54:34.719718Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.720556Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.724375Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T04:54:34.835688Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.836387Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.839922Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-05-27T04:54:34.868895Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.869981Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.873402Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-05-27T04:54:34.878223Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.879223Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.882324Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-05-27T04:54:34.944040Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.944207Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.945163Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.945599Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.949244Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-05-27T04:54:34.950336Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-05-27T04:54:35.010401Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.010535Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.011244Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.011764Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.015589Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T04:54:35.016535Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-05-27T04:54:35.029893Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.030873Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.033930Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T04:54:35.047206Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.047986Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.051624Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T04:54:35.080619Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.081434Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.084537Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-05-27T04:54:35.089251Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.089940Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.092301Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-05-27T04:54:35.097754Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.098471Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.101196Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-05-27T04:54:35.130509Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.131338Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.134974Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T04:54:35.135516Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.136322Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.138880Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-05-27T04:54:35.144203Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.176378Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.208476Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.209107Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.212585Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-05-27T04:54:35.273998Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.488962Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.489740Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.493067Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-05-27T04:54:35.554348Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.618997Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.620017Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.623095Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-05-27T04:54:35.636161Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.636767Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.639708Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-05-27T04:54:35.669108Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.673127Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.987871Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.988411Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:35.991327Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-05-27T04:54:36.052789Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.070943Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.071437Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.074704Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-05-27T04:54:37.136138Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.136468Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.136694Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.137376Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.137723Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.143037Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:37.143871Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:37.170352Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:37.170755Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.170899Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.171316Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.172008Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.172326Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.175246Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:37.201953Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:37.205456Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.205528Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.205795Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:37.208586Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:37.237994Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:41.863803Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:50.158152Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:50.158152Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] 
[2026-05-27T04:54:50.158152Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:50.158210Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] 
[2026-05-27T04:54:50.158218Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:50.158225Z] [nf-ff7c313fb29eff97706018f97958b914-fe1ea-vsftr] [617_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec