Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/bfd0f9c3c23df90fcdedac0ebe9cd6/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878-downsampled-500k.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/bfd0f9c3c23df90fcdedac0ebe9cd6/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/b8328367b22c15bd3300ec483b8d21/Sig_18_Blood.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/b8328367b22c15bd3300ec483b8d21/Sig_18_Blood.recalibrated.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-05-27T04:54:28.175400Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Initiating pyFlow run
[2026-05-27T04:54:28.176274Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-05-27T04:54:28.176297Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-05-27T04:54:28.176303Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-05-27T04:54:28.176308Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXUkYnpN'
[2026-05-27T04:54:28.176313Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-05-27T04:54:28.176319Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] [RunParameters] mode: local
[2026-05-27T04:54:28.176323Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-05-27T04:54:28.176328Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-05-27T04:54:28.176332Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-05-27T04:54:28.176337Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-05-27T04:54:28.176342Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-05-27T04:54:28.176346Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-05-27T04:54:28.176351Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-05-27T04:54:28.176733Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-05-27T04:54:28.176847Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-05-27T04:54:28.183094Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-05-27T04:54:28.183946Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-05-27T04:54:28.184253Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-05-27T04:54:28.184403Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-05-27T04:54:28.184704Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.185596Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.185687Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.185768Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.186241Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.186363Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.186575Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.187518Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.187734Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.189309Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.189727Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.189896Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-05-27T04:54:28.190233Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.190433Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.190672Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.190738Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.190848Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.190911Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.191053Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.191128Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.191320Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.191391Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.191519Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.191590Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.191705Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.191774Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.191959Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.192025Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.192346Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.192699Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.192820Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.192930Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193051Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193114Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193223Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193287Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193396Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193459Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193568Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193636Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.193921Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.194402Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.194605Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.194689Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.194812Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.194885Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.195006Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.195150Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.195320Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.195550Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.196059Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.196132Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.196248Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.196311Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.196423Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.196488Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.212493Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.212935Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.213855Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.214119Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.214206Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.214300Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.214374Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.214485Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.214567Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-05-27T04:54:28.214726Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-05-27T04:54:28.218581Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.219200Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.219454Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.219736Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.220367Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.221192Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.221915Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.224554Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.225572Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:28.230125Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T04:54:28.234579Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T04:54:28.236592Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T04:54:28.237052Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T04:54:28.240167Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T04:54:28.242029Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T04:54:28.243366Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:28.244354Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T04:54:29.245859Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.245936Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.246597Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.246923Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.250149Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T04:54:29.251623Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T04:54:29.311615Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.312400Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.315271Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T04:54:29.376708Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.377539Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.380263Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T04:54:29.742818Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.743898Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.747139Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:29.808094Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.809172Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.812114Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-05-27T04:54:29.873602Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.874497Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:29.877674Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T04:54:30.440597Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.441475Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.444384Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T04:54:30.756972Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.757809Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.760481Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-05-27T04:54:30.822175Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.822966Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.826258Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T04:54:30.855418Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.856225Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.859256Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-05-27T04:54:30.888316Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.888419Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.889103Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.889384Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.892256Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-05-27T04:54:30.893065Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.893329Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-05-27T04:54:30.893892Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.896648Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-05-27T04:54:30.925943Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.926018Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.926057Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.926599Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.926846Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.927241Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.931083Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-05-27T04:54:30.932783Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T04:54:30.933834Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T04:54:30.992519Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.993229Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:30.996207Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T04:54:31.107885Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.107998Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.108658Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.108912Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.112130Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-05-27T04:54:31.113331Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T04:54:31.173340Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.174023Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.177117Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T04:54:31.238495Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.239237Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.242567Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:31.303818Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.303939Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.304553Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.304993Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.308287Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-05-27T04:54:31.309095Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-05-27T04:54:31.369167Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.369275Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.369917Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.370346Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.374469Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T04:54:31.434819Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.435522Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.438708Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-05-27T04:54:31.499899Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.500589Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.503970Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:31.615215Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.615854Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.618695Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-05-27T04:54:31.679942Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.680581Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.683388Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-05-27T04:54:31.744706Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.745360Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.748146Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-05-27T04:54:31.809554Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.810226Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:31.813481Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T04:54:32.225878Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.226475Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.229290Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-05-27T04:54:32.258588Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.258683Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.259217Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.259521Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.262218Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-05-27T04:54:32.263673Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-05-27T04:54:32.324004Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.324123Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.324825Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.325302Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.328524Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:32.329291Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-05-27T04:54:32.357598Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.358167Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.360677Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T04:54:32.390437Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.391059Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.394097Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-05-27T04:54:32.423522Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.424064Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.426770Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-05-27T04:54:32.431803Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.432269Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.434666Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-05-27T04:54:32.464441Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.464564Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.578802Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.579310Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.581950Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-05-27T04:54:32.611295Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.876330Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.876833Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:32.879825Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-05-27T04:54:32.941223Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.669666Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T04:54:33.707302Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.707419Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.707848Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.708251Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.711360Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-05-27T04:54:33.712181Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-05-27T04:54:33.773500Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:33.773594Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.489276Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.489738Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.492432Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-05-27T04:54:34.521547Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.735981Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.736351Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.738413Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-05-27T04:54:34.768237Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.768454Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.768572Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.768953Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.769175Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.772971Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-05-27T04:54:34.774112Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-05-27T04:54:34.774985Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-05-27T04:54:34.802349Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.802410Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.802431Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.802613Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.802937Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.805297Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-05-27T04:54:34.806129Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-05-27T04:54:34.834764Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.834831Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.835008Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-05-27T04:54:34.837143Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-05-27T04:54:34.866872Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-05-27T04:54:38.739703Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-05-27T04:54:47.064425Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-05-27T04:54:47.064425Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] 
[2026-05-27T04:54:47.064425Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-05-27T04:54:47.064477Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] 
[2026-05-27T04:54:47.064484Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-05-27T04:54:47.064491Z] [nf-dcbfd0f9c3c23df90fcdedac0ebe9cd6-7d7ef-mtmgp] [660_1] [WorkflowRunner] Elapsed time for full workflow: 18 sec