File Info

Filename
negative_somatic_control_1.tnseq.orientation_data.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/d6d264afd0123ae8eae2821740f21e/negative_somatic_control_1.tnseq.orientation_data.tsv
Size
8.7 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_TNSEQ:SENTIEON_TNHAPLOTYPER2 (negative_somatic_control_1)
Attempt

Content

View in new tab
#<METADATA>SAMPLE=HCC1395_BL
context rev_comp f1r2_a f1r2_c f1r2_g f1r2_t f2r1_a f2r1_c f2r1_g f2r1_t hom_ref germline_het somatic_het hom_var num_examples num_alt_examples
AAA TTT 0 2.72158e-06 4.61258e-06 2.50791e-06 0 1.24864e-05 4.54669e-05 2.89598e-06 0.999179 0.000139712 0.000533319 7.76853e-05 39903 693
AAC GTT 0 5.71959e-06 0.000143816 5.34639e-06 0 5.50377e-06 0.00015286 5.35249e-06 0.999034 0.000106992 0.000268424 0.0002724 18720 383
AAG CTT 0 3.83646e-06 0.000193487 3.70039e-06 0 1.65447e-05 0.000166545 4.44702e-06 0.99854 0.00016344 0.000576818 0.000331143 27450 700
AAT ATT 0 4.62003e-06 0.000115491 4.22541e-06 0 4.57688e-06 1.04185e-05 4.23765e-06 0.999133 0.000130457 0.000336657 0.000256655 23706 460
ACA TGT 0.00103239 0 3.90118e-06 7.04347e-06 0.0023247 0 1.41758e-05 2.24756e-05 0.995638 8.08271e-05 0.000760425 0.000116004 26716 1204
ACC GGT 0.00058356 0 5.35234e-06 5.39849e-05 0.00123645 0 5.9926e-06 2.04728e-05 0.996495 0.000504093 0.000891912 0.000203481 20146 798
ACG CGT 0.00127269 0 1.16334e-05 6.20884e-05 0.00225876 0 1.32567e-05 0.000923989 0.988617 0.00401792 0.00143054 0.00139164 8668 616
ACT AGT 0.000928609 0 5.13994e-06 1.55928e-05 0.00178811 0 5.28653e-06 1.30194e-05 0.996154 0.000278366 0.000458345 0.000353934 20059 830
AGA TCT 2.54657e-05 4.18557e-06 0 0.000504976 5.62229e-06 3.46753e-06 0 0.000863622 0.99739 0.000125952 0.000702547 0.00037451 29448 915
AGC GCT 4.40875e-05 3.85578e-06 0 0.00215226 4.74751e-05 5.93728e-06 0 0.00180645 0.995061 4.58832e-05 0.000590441 0.00024283 26462 1269
AGG CCT 1.31581e-05 4.33918e-06 0 0.000595078 3.69121e-05 3.39831e-06 0 0.000720651 0.997591 0.000206961 0.000464036 0.000364376 30447 1218
AGT ACT 1.30194e-05 5.28653e-06 0 0.00178811 1.55928e-05 5.13994e-06 0 0.000928609 0.996154 0.000278366 0.000458345 0.000353934 20059 830
ATA TAT 5.67345e-06 2.13696e-05 6.20975e-06 0 5.6665e-06 6.25513e-05 0.000134189 0 0.998529 0.000750142 0.000255598 0.000229684 17701 418
ATC GAT 6.06498e-06 4.34068e-05 4.61268e-05 0 5.93699e-06 6.7555e-05 6.39436e-06 0 0.998461 8.13982e-05 0.000742847 0.000539735 16859 390
ATG CAT 9.3397e-06 1.49269e-05 6.21297e-06 0 5.72029e-06 5.12084e-06 4.79062e-06 0 0.99733 0.000389017 0.00131129 0.000923777 22839 568
ATT AAT 4.23765e-06 1.04185e-05 4.57688e-06 0 4.22541e-06 0.000115491 4.62003e-06 0 0.999133 0.000130457 0.000336657 0.000256655 23706 460
CAA TTG 0 4.68662e-06 7.60537e-06 4.44421e-06 0 5.2973e-06 5.48697e-06 5.9829e-06 0.999093 0.000444363 0.000202463 0.000226308 22534 470
CAC GTG 0 8.19293e-06 1.03894e-05 4.62166e-06 0 4.53265e-05 5.50473e-06 4.40954e-06 0.997233 0.000602193 0.0012727 0.000813475 25730 705
CAG CTG 0 2.80347e-06 0.00010025 2.73078e-06 0 2.954e-06 0.000122728 3.76246e-06 0.997816 0.000885418 0.000361004 0.000702513 38504 1242
CAT ATG 0 4.79062e-06 5.12084e-06 5.72029e-06 0 6.21297e-06 1.49269e-05 9.3397e-06 0.99733 0.000389017 0.00131129 0.000923777 22839 568
CCA TGG 0.00108052 0 3.33319e-06 5.86759e-05 0.00135142 0 4.99105e-06 3.62137e-05 0.996949 0.000257976 0.000124459 0.000133292 30772 1276
CCC GGG 0.00019131 0 3.45353e-06 6.12745e-06 0.000340648 0 3.72368e-06 4.27286e-06 0.99818 0.00050519 0.000427374 0.000337641 29910 939
CCG CGG 0.00154237 0 1.36615e-05 0.000308045 0.00131028 0 9.31661e-06 0.000290986 0.990868 0.00226977 0.00166229 0.00172482 13389 817
CCT AGG 0.000720651 0 3.39831e-06 3.69121e-05 0.000595078 0 4.33918e-06 1.31581e-05 0.997591 0.000206961 0.000464036 0.000364376 30447 1218
CGA TCG 0.000428906 2.33895e-05 0 0.000992928 3.94508e-05 1.48436e-05 0 0.00134312 0.991537 0.00250596 0.00171432 0.00140017 7197 345
CGC GCG 0.000808938 8.66734e-06 0 0.00354534 0.000191462 9.07109e-06 0 0.00108237 0.987635 0.00257568 0.00249605 0.00164701 11590 804
CGG CCG 0.000290986 9.31661e-06 0 0.00131028 0.000308045 1.36615e-05 0 0.00154237 0.990868 0.00226977 0.00166229 0.00172482 13389 817
CGT ACG 0.000923989 1.32567e-05 0 0.00225876 6.20884e-05 1.16334e-05 0 0.00127269 0.988617 0.00401792 0.00143054 0.00139164 8668 616
CTA TAG 3.38181e-05 0.000322907 8.66466e-06 0 7.95629e-06 0.000109463 8.58233e-06 0 0.998075 0.000136051 0.000813712 0.000484111 12595 357
CTC GAG 3.91753e-06 0.000187905 3.83671e-06 0 3.61279e-06 0.000225973 3.78136e-06 0 0.998547 7.99861e-05 0.000654931 0.000289433 27877 883
CTG CAG 3.76246e-06 0.000122728 2.954e-06 0 2.73078e-06 0.00010025 2.80347e-06 0 0.997816 0.000885418 0.000361004 0.000702513 38504 1242
CTT AAG 4.44702e-06 0.000166545 1.65447e-05 0 3.70039e-06 0.000193487 3.83646e-06 0 0.99854 0.00016344 0.000576818 0.000331143 27450 700
GAA TTC 0 3.87978e-06 5.8535e-05 3.71179e-06 0 3.85678e-06 4.21658e-05 3.71544e-06 0.99927 0.000146036 0.000353726 0.000114797 27000 573
GAC GTC 0 6.29045e-06 4.33069e-05 5.68429e-06 0 2.89576e-05 6.99114e-05 7.48312e-06 0.998531 6.2769e-05 0.000783983 0.000460272 17596 453
GAG CTC 0 3.78136e-06 0.000225973 3.61279e-06 0 3.83671e-06 0.000187905 3.91753e-06 0.998547 7.99861e-05 0.000654931 0.000289433 27877 883
GAT ATC 0 6.39436e-06 6.7555e-05 5.93699e-06 0 4.61268e-05 4.34068e-05 6.06498e-06 0.998461 8.13982e-05 0.000742847 0.000539735 16859 390
GCA TGC 0.00221693 0 4.82788e-06 7.65597e-05 0.00299899 0 3.8321e-06 0.000388037 0.993473 0.000135714 0.000546172 0.000155497 26359 1450
GCC GGC 0.00238432 0 4.36316e-06 0.000110359 0.00173261 0 4.10328e-06 0.000238217 0.994614 5.98911e-05 0.000594399 0.000257581 27563 1313
GCG CGC 0.00108237 0 9.07109e-06 0.000191462 0.00354534 0 8.66734e-06 0.000808938 0.987635 0.00257568 0.00249605 0.00164701 11590 804
GCT AGC 0.00180645 0 5.93728e-06 4.74751e-05 0.00215226 0 3.85578e-06 4.40875e-05 0.995061 4.58832e-05 0.000590441 0.00024283 26462 1269
GGA TCC 4.86644e-06 8.24993e-06 0 0.000366131 4.10845e-06 3.78469e-06 0 0.000262137 0.998458 0.000293149 0.000372735 0.000226852 26887 719
GGC GCC 0.000238217 4.10328e-06 0 0.00173261 0.000110359 4.36316e-06 0 0.00238432 0.994614 5.98911e-05 0.000594399 0.000257581 27563 1313
GGG CCC 4.27286e-06 3.72368e-06 0 0.000340648 6.12745e-06 3.45353e-06 0 0.00019131 0.99818 0.00050519 0.000427374 0.000337641 29910 939
GGT ACC 2.04728e-05 5.9926e-06 0 0.00123645 5.39849e-05 5.35234e-06 0 0.00058356 0.996495 0.000504093 0.000891912 0.000203481 20146 798
GTA TAC 8.62258e-06 5.54226e-05 1.63499e-05 0 7.40158e-06 4.283e-05 2.77605e-05 0 0.99811 0.000545191 0.000809912 0.000376574 13541 369
GTC GAC 7.48312e-06 6.99114e-05 2.89576e-05 0 5.68429e-06 4.33069e-05 6.29045e-06 0 0.998531 6.2769e-05 0.000783983 0.000460272 17596 453
GTG CAC 4.40954e-06 5.50473e-06 4.53265e-05 0 4.62166e-06 1.03894e-05 8.19293e-06 0 0.997233 0.000602193 0.0012727 0.000813475 25730 705
GTT AAC 5.35249e-06 0.00015286 5.50377e-06 0 5.34639e-06 0.000143816 5.71959e-06 0 0.999034 0.000106992 0.000268424 0.0002724 18720 383
TAA TTA 0 7.51061e-06 5.89898e-06 6.923e-06 0 7.06701e-06 5.51798e-06 5.87469e-06 0.998624 0.000189675 0.000847844 0.000299291 20377 404
TAC GTA 0 2.77605e-05 4.283e-05 7.40158e-06 0 1.63499e-05 5.54226e-05 8.62258e-06 0.99811 0.000545191 0.000809912 0.000376574 13541 369
TAG CTA 0 8.58233e-06 0.000109463 7.95629e-06 0 8.66466e-06 0.000322907 3.38181e-05 0.998075 0.000136051 0.000813712 0.000484111 12595 357
TAT ATA 0 0.000134189 6.25513e-05 5.6665e-06 0 6.20975e-06 2.13696e-05 5.67345e-06 0.998529 0.000750142 0.000255598 0.000229684 17701 418
TCA TGA 0.0015498 0 4.27477e-06 6.04723e-05 0.00143116 0 4.93155e-06 3.37508e-05 0.996082 8.13208e-05 0.000477193 0.000275468 25763 906
TCC GGA 0.000262137 0 3.78469e-06 4.10845e-06 0.000366131 0 8.24993e-06 4.86644e-06 0.998458 0.000293149 0.000372735 0.000226852 26887 719
TCG CGA 0.00134312 0 1.48436e-05 3.94508e-05 0.000992928 0 2.33895e-05 0.000428906 0.991537 0.00250596 0.00171432 0.00140017 7197 345
TCT AGA 0.000863622 0 3.46753e-06 5.62229e-06 0.000504976 0 4.18557e-06 2.54657e-05 0.99739 0.000125952 0.000702547 0.00037451 29448 915
TGA TCA 3.37508e-05 4.93155e-06 0 0.00143116 6.04723e-05 4.27477e-06 0 0.0015498 0.996082 8.13208e-05 0.000477193 0.000275468 25763 906
TGC GCA 0.000388037 3.8321e-06 0 0.00299899 7.65597e-05 4.82788e-06 0 0.00221693 0.993473 0.000135714 0.000546172 0.000155497 26359 1450
TGG CCA 3.62137e-05 4.99105e-06 0 0.00135142 5.86759e-05 3.33319e-06 0 0.00108052 0.996949 0.000257976 0.000124459 0.000133292 30772 1276
TGT ACA 2.24756e-05 1.41758e-05 0 0.0023247 7.04347e-06 3.90118e-06 0 0.00103239 0.995638 8.08271e-05 0.000760425 0.000116004 26716 1204
TTA TAA 5.87469e-06 5.51798e-06 7.06701e-06 0 6.923e-06 5.89898e-06 7.51061e-06 0 0.998624 0.000189675 0.000847844 0.000299291 20377 404
TTC GAA 3.71544e-06 4.21658e-05 3.85678e-06 0 3.71179e-06 5.8535e-05 3.87978e-06 0 0.99927 0.000146036 0.000353726 0.000114797 27000 573
TTG CAA 5.9829e-06 5.48697e-06 5.2973e-06 0 4.44421e-06 7.60537e-06 4.68662e-06 0 0.999093 0.000444363 0.000202463 0.000226308 22534 470
TTT AAA 2.89598e-06 4.54669e-05 1.24864e-05 0 2.50791e-06 4.61258e-06 2.72158e-06 0 0.999179 0.000139712 0.000533319 7.76853e-05 39903 693
66 rows